Wall clock time and date at job start Tue Mar 31 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46917 * 2 1 4 4 H 1.09003 * 115.56683 * 29.31106 * 3 2 1 5 5 C 1.53000 * 117.49889 * 243.62336 * 3 2 1 6 6 C 1.53003 * 60.00156 * 252.50819 * 5 3 2 7 7 H 1.08999 * 117.49582 * 107.50604 * 6 5 3 8 8 C 1.50703 * 117.50131 * 252.51004 * 6 5 3 9 9 O 1.21281 * 119.99923 * 68.60155 * 8 6 5 10 10 N 1.34773 * 119.99892 * 248.61038 * 8 6 5 11 11 C 1.47029 * 125.64802 * 359.96874 * 10 8 6 12 12 C 1.54327 * 107.26790 * 178.99157 * 11 10 8 13 13 C 1.55154 * 102.94290 * 337.80696 * 12 11 10 14 14 H 1.09002 * 111.00378 * 277.42832 * 13 12 11 15 15 C 1.53001 * 111.00204 * 153.61339 * 13 12 11 16 16 C 1.53000 * 109.46888 * 69.58445 * 15 13 12 17 17 N 1.46503 * 109.47203 * 180.02562 * 16 15 13 18 18 C 1.36938 * 120.00082 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99627 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99686 * 179.97438 * 18 17 16 21 21 N 1.31622 * 119.99651 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00382 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47185 * 90.00031 * 22 20 18 24 24 H 1.48495 * 109.47272 * 209.99858 * 22 20 18 25 25 H 1.48501 * 109.47001 * 330.00173 * 22 20 18 26 26 C 1.47418 * 125.64700 * 180.02562 * 10 8 6 27 27 H 1.09003 * 109.46682 * 299.99911 * 1 2 3 28 28 H 1.08996 * 109.47180 * 60.00090 * 1 2 3 29 29 H 1.09000 * 109.46689 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46706 * 240.00336 * 2 1 3 31 31 H 1.08996 * 109.47180 * 119.99910 * 2 1 3 32 32 H 1.09003 * 117.50042 * 145.02255 * 5 3 2 33 33 H 1.08995 * 117.51689 * 359.97438 * 5 3 2 34 34 H 1.08993 * 109.88066 * 59.57140 * 11 10 8 35 35 H 1.08996 * 110.00664 * 298.48127 * 11 10 8 36 36 H 1.09004 * 110.71649 * 219.44279 * 12 11 10 37 37 H 1.09001 * 110.71543 * 96.16961 * 12 11 10 38 38 H 1.08999 * 109.47118 * 189.57787 * 15 13 12 39 39 H 1.08996 * 109.47145 * 309.58265 * 15 13 12 40 40 H 1.09000 * 109.47158 * 299.99324 * 16 15 13 41 41 H 1.08996 * 109.47375 * 59.99960 * 16 15 13 42 42 H 0.97002 * 119.99864 * 359.97438 * 17 16 15 43 43 H 0.96994 * 119.99941 * 179.97438 * 21 20 18 44 44 H 1.08995 * 110.37279 * 85.24185 * 26 10 8 45 45 H 1.08997 * 110.36990 * 322.91383 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1718 0.4814 5 6 2.8439 1.9076 -1.2159 6 6 3.5502 1.6580 0.1183 7 1 4.1806 0.7722 0.1959 8 6 4.0229 2.8621 0.8914 9 8 3.2158 3.6169 1.3912 10 7 5.3424 3.1002 1.0273 11 6 6.4240 2.2708 0.4760 12 6 7.7587 2.9430 0.8616 13 6 7.3436 4.4149 1.1234 14 1 7.2835 4.9757 0.1906 15 6 8.3045 5.0894 2.1045 16 6 9.6635 5.2899 1.4309 17 7 10.5838 5.9352 2.3706 18 6 11.8676 6.2175 1.9868 19 1 12.2018 5.9640 0.9916 20 6 12.7394 6.8294 2.8770 21 7 13.9736 7.1002 2.5083 22 14 12.1612 7.2684 4.5981 23 1 12.4209 6.1283 5.5134 24 1 12.8975 8.4656 5.0774 25 1 10.7053 7.5603 4.5717 26 6 5.9403 4.2348 1.7543 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7212 2.9428 -1.5344 33 1 3.0101 1.1860 -2.0157 34 1 6.3349 2.2188 -0.6090 35 1 6.3780 1.2678 0.9001 36 1 8.4718 2.8838 0.0393 37 1 8.1708 2.4921 1.7643 38 1 7.9001 6.0569 2.4020 39 1 8.4252 4.4595 2.9859 40 1 10.0679 4.3224 1.1335 41 1 9.5428 5.9198 0.5496 42 1 10.2835 6.1632 3.2643 43 1 14.5827 7.5281 3.1302 44 1 6.0286 4.0014 2.8153 45 1 5.3419 5.1346 1.6115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326373177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:24 Heat of formation + Delta-G solvation = -36.064538 kcal Electronic energy + Delta-G solvation = -21394.602901 eV Core-core repulsion = 18218.516388 eV Total energy + Delta-G solvation = -3176.086512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35884 -39.41435 -37.82644 -36.96507 -34.57291 -33.13486 -32.73496 -30.69024 -29.33871 -26.32587 -24.88716 -24.51443 -23.57233 -22.91343 -21.44070 -21.26791 -20.04096 -19.58846 -18.30063 -17.29080 -16.76884 -16.60984 -16.03101 -15.74828 -15.53462 -15.38260 -15.03168 -14.77655 -14.48144 -14.21508 -14.16851 -13.62684 -13.38999 -13.33299 -13.17340 -12.99425 -12.91782 -12.82840 -12.43456 -12.21055 -12.06418 -11.93623 -11.90035 -11.75504 -11.56871 -11.52289 -11.27283 -11.06249 -10.95194 -10.80708 -9.71088 -9.29014 -8.03034 -5.36483 1.38216 1.40150 1.41446 1.48932 1.88538 2.48406 2.83092 3.28218 3.31085 3.49826 3.65679 3.72421 3.76379 3.84642 3.98719 4.12803 4.26856 4.30930 4.33495 4.43425 4.47990 4.51982 4.57495 4.59877 4.74581 4.76810 4.82489 4.86889 4.91664 4.93772 4.97371 5.11042 5.15290 5.20413 5.21907 5.28409 5.32296 5.35705 5.44365 5.49108 5.76011 6.21353 6.46484 7.06718 7.08197 7.85246 8.03412 9.18376 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.050413 B = 0.002479 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.277125 B =11293.403524 C =11561.806411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.124 4.124 4 H 0.090 0.910 5 C -0.134 4.134 6 C -0.190 4.190 7 H 0.148 0.852 8 C 0.547 3.453 9 O -0.593 6.593 10 N -0.616 5.616 11 C 0.102 3.898 12 C -0.126 4.126 13 C -0.085 4.085 14 H 0.087 0.913 15 C -0.107 4.107 16 C 0.155 3.845 17 N -0.763 5.763 18 C -0.236 4.236 19 H 0.057 0.943 20 C -0.067 4.067 21 N -0.984 5.984 22 Si 0.957 3.043 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.252 1.252 26 C 0.109 3.891 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.020 0.980 42 H 0.365 0.635 43 H 0.258 0.742 44 H 0.069 0.931 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.795 -17.557 -6.826 31.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.142 4.142 4 H 0.109 0.891 5 C -0.171 4.171 6 C -0.211 4.211 7 H 0.165 0.835 8 C 0.338 3.662 9 O -0.475 6.475 10 N -0.348 5.348 11 C -0.020 4.020 12 C -0.164 4.164 13 C -0.105 4.105 14 H 0.105 0.895 15 C -0.145 4.145 16 C 0.029 3.971 17 N -0.408 5.408 18 C -0.367 4.367 19 H 0.075 0.925 20 C -0.258 4.258 21 N -0.634 5.634 22 Si 0.784 3.216 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.177 1.177 26 C -0.014 4.014 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.152 0.848 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.038 0.962 42 H 0.198 0.802 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.125 -17.196 -6.735 31.993 hybrid contribution 0.418 0.959 1.182 1.579 sum -25.707 -16.236 -5.553 30.908 Atomic orbital electron populations 1.21752 0.95053 1.02277 1.01745 1.21154 0.96374 0.92064 1.03065 1.22500 0.90699 0.99552 1.01495 0.89136 1.23195 1.00358 1.03260 0.90326 1.22317 0.98189 0.97939 1.02629 0.83482 1.20010 0.80414 0.86179 0.79582 1.90669 1.54351 1.50940 1.51533 1.48545 1.05287 1.27511 1.53428 1.22262 0.85005 0.94815 0.99905 1.22773 0.96333 0.93625 1.03627 1.22163 0.92249 0.97179 0.98909 0.89476 1.21564 0.93508 1.01018 0.98430 1.20791 0.88826 0.95435 0.92007 1.42788 1.09944 1.73943 1.14172 1.19065 0.87771 1.31442 0.98402 0.92463 1.25554 0.95835 1.01672 1.02774 1.69888 1.06535 1.49744 1.37266 0.85378 0.78590 0.77481 0.80151 1.20213 1.22319 1.17703 1.22248 0.93505 0.89359 0.96248 0.93542 0.92421 0.91398 0.89792 0.91316 0.89628 0.84828 0.89447 0.89332 0.88606 0.89998 0.91784 0.90921 0.94761 0.96155 0.80151 0.93342 0.91277 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.87 71.98 0.71 -0.79 16 2 C -0.09 -0.90 6.22 30.60 0.19 -0.71 16 3 C -0.12 -1.88 5.25 -10.79 -0.06 -1.93 16 4 H 0.09 1.88 7.60 -2.39 -0.02 1.86 16 5 C -0.13 -1.70 9.88 30.60 0.30 -1.40 16 6 C -0.19 -2.97 5.26 -11.54 -0.06 -3.03 16 7 H 0.15 1.53 7.73 -2.39 -0.02 1.51 16 8 C 0.55 13.19 7.63 87.66 0.67 13.86 16 9 O -0.59 -19.62 16.51 -3.03 -0.05 -19.67 16 10 N -0.62 -12.91 3.33 -811.81 -2.70 -15.61 16 11 C 0.10 1.44 6.28 86.73 0.54 1.98 16 12 C -0.13 -2.10 5.74 31.78 0.18 -1.92 16 13 C -0.09 -1.80 3.04 -9.40 -0.03 -1.83 16 14 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 15 C -0.11 -2.84 4.84 30.59 0.15 -2.69 16 16 C 0.16 5.54 6.14 86.38 0.53 6.07 16 17 N -0.76 -35.37 5.41 -343.45 -1.86 -37.22 16 18 C -0.24 -13.51 10.47 84.03 0.88 -12.63 16 19 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 20 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 21 N -0.98 -63.30 13.97 21.65 0.30 -63.00 16 22 Si 0.96 45.57 27.74 68.60 1.90 47.47 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.25 -10.86 6.52 99.48 0.65 -10.21 16 26 C 0.11 2.48 6.38 86.86 0.55 3.03 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.56 7.88 -2.39 -0.02 0.54 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.13 0.93 8.03 -2.39 -0.02 0.91 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.09 0.93 8.06 -2.39 -0.02 0.91 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.39 7.97 -2.39 -0.02 1.37 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.85 8.04 -2.39 -0.02 1.83 16 40 H 0.03 1.20 7.63 -2.39 -0.02 1.18 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.37 16.13 5.53 -92.71 -0.51 15.62 16 43 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.07 1.57 8.04 -2.39 -0.02 1.55 16 45 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 Total: -1.00 -74.65 362.51 3.00 -71.65 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.37 Total: 21.87 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 5.03 Total: -5.49 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -4.25 Total: -115.83 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.05 Total: -19.67 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Total: -74.65 3.00 -71.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326373177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.587 kcal (2) G-P(sol) polarization free energy of solvation -74.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds