Wall clock time and date at job start Tue Mar 31 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 120.00176 * 2 1 4 4 H 1.09004 * 109.46923 * 359.97438 * 3 2 1 5 5 C 1.52991 * 109.46991 * 240.00169 * 3 2 1 6 6 C 1.52999 * 109.47754 * 64.99950 * 5 3 2 7 7 C 1.52999 * 109.47276 * 119.99638 * 3 2 1 8 8 C 1.50702 * 109.46960 * 295.00115 * 7 3 2 9 9 O 1.21282 * 120.00145 * 359.97438 * 8 7 3 10 10 N 1.34776 * 119.99795 * 179.97438 * 8 7 3 11 11 C 1.47081 * 120.88011 * 359.97438 * 10 8 7 12 12 C 1.53235 * 108.52054 * 231.20569 * 11 10 8 13 13 N 1.46906 * 109.34079 * 306.16959 * 12 11 10 14 14 C 1.46898 * 110.99801 * 187.25100 * 13 12 11 15 15 C 1.50700 * 109.46835 * 170.00134 * 14 13 12 16 16 H 1.08001 * 120.00412 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00313 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00149 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99689 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47324 * 89.99628 * 19 17 15 21 21 H 1.48497 * 109.47005 * 210.00209 * 19 17 15 22 22 H 1.48500 * 109.47246 * 329.99791 * 19 17 15 23 23 C 1.46896 * 111.26658 * 63.10656 * 13 12 11 24 24 C 1.47082 * 120.88489 * 179.97438 * 10 8 7 25 25 H 1.08005 * 119.99830 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.99689 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.99818 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46984 * 184.99854 * 5 3 2 29 29 H 1.09008 * 109.47126 * 304.99327 * 5 3 2 30 30 H 1.08994 * 109.47428 * 59.99727 * 6 5 3 31 31 H 1.08995 * 109.47377 * 180.02562 * 6 5 3 32 32 H 1.09005 * 109.46381 * 299.99744 * 6 5 3 33 33 H 1.09001 * 109.46860 * 175.00214 * 7 3 2 34 34 H 1.08992 * 109.46930 * 55.00143 * 7 3 2 35 35 H 1.09002 * 109.63012 * 111.50012 * 11 10 8 36 36 H 1.09000 * 109.63054 * 350.91275 * 11 10 8 37 37 H 1.08997 * 109.49554 * 186.21402 * 12 11 10 38 38 H 1.08997 * 109.49382 * 66.13002 * 12 11 10 39 39 H 1.08993 * 109.47768 * 290.00114 * 14 13 12 40 40 H 1.09004 * 109.47075 * 50.00431 * 14 13 12 41 41 H 0.97003 * 120.00014 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.49756 * 56.85119 * 23 13 12 43 43 H 1.08996 * 109.49111 * 176.93688 * 23 13 12 44 44 H 1.09001 * 109.62379 * 9.08505 * 24 10 8 45 45 H 1.08998 * 109.62760 * 248.50576 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2492 6 6 2.0566 1.4307 -2.4953 7 6 2.9432 1.3862 1.2493 8 6 2.0697 1.4301 2.4766 9 8 0.8626 1.4001 2.3632 10 7 2.6301 1.5029 3.7002 11 6 4.0917 1.5398 3.8601 12 6 4.4977 0.4648 4.8738 13 7 3.7323 0.6513 6.1137 14 6 4.2129 -0.2498 7.1696 15 6 3.5815 0.1338 8.4831 16 1 2.8924 0.9641 8.5290 17 6 3.8842 -0.5746 9.6266 18 7 3.3335 -0.2396 10.7729 19 14 5.0777 -2.0095 9.5477 20 1 6.4589 -1.5182 9.7848 21 1 4.7217 -3.0072 10.5884 22 1 5.0013 -2.6438 8.2072 23 6 2.2927 0.4715 5.8833 24 6 1.7962 1.5473 4.9110 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.5541 2.2878 -1.2056 29 1 3.5907 0.5104 -1.2951 30 1 1.4091 2.3063 -2.4495 31 1 2.6832 1.4880 -3.3853 32 1 1.4457 0.5290 -2.5389 33 1 3.5541 2.2879 1.2056 34 1 3.5906 0.5106 1.2952 35 1 4.3954 2.5209 4.2255 36 1 4.5702 1.3387 2.9016 37 1 5.5631 0.5505 5.0878 38 1 4.2874 -0.5220 4.4614 39 1 3.9423 -1.2762 6.9225 40 1 5.2970 -0.1692 7.2504 41 1 3.5468 -0.7378 11.5774 42 1 2.1130 -0.5153 5.4567 43 1 1.7588 0.5621 6.8292 44 1 0.7570 1.3511 4.6472 45 1 1.8796 2.5291 5.3771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333526058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:54 Heat of formation + Delta-G solvation = -17.329275 kcal Electronic energy + Delta-G solvation = -22445.868777 eV Core-core repulsion = 19270.594686 eV Total energy + Delta-G solvation = -3175.274090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.12889 -37.97895 -36.60561 -34.46322 -32.40510 -31.86573 -31.33566 -30.15856 -28.62644 -25.88454 -24.75245 -23.12853 -21.85523 -21.69390 -20.50947 -19.63914 -18.58532 -17.03248 -16.77093 -15.84081 -15.68197 -14.88897 -14.67734 -14.65624 -14.54293 -14.29141 -13.87287 -13.60396 -13.43765 -13.33400 -12.79246 -12.46396 -12.35570 -12.20113 -11.97100 -11.59259 -11.47590 -11.39370 -11.24023 -11.00796 -10.91139 -10.78187 -10.62066 -10.56707 -10.35785 -9.95243 -9.68257 -9.34517 -9.12651 -8.61921 -8.44957 -7.48319 -6.09987 -4.08062 2.41084 2.79329 3.13867 3.24388 3.32391 3.33425 4.37251 4.45239 4.58243 4.60968 4.68748 4.99228 5.06983 5.14512 5.19889 5.22718 5.28752 5.31037 5.36210 5.42312 5.51166 5.61254 5.66686 5.71136 5.74669 5.75997 5.90804 5.94325 5.96525 6.02637 6.07545 6.14163 6.35485 6.47683 6.64496 6.70386 6.81584 6.90179 6.91635 7.50992 7.56724 7.80652 7.93479 8.33842 8.58695 8.97699 9.51192 11.02935 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.003360 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.729961 B = 8332.005043 C = 8510.986005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.152 4.152 3 C -0.044 4.044 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.133 4.133 8 C 0.511 3.489 9 O -0.540 6.540 10 N -0.612 5.612 11 C 0.113 3.887 12 C 0.037 3.963 13 N -0.527 5.527 14 C 0.163 3.837 15 C -0.512 4.512 16 H 0.081 0.919 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.051 3.949 24 C 0.116 3.884 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.027 0.973 39 H -0.012 1.012 40 H 0.025 0.975 41 H 0.264 0.736 42 H 0.024 0.976 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 2.660 -23.275 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.173 4.173 8 C 0.299 3.701 9 O -0.417 6.417 10 N -0.346 5.346 11 C -0.010 4.010 12 C -0.093 4.093 13 N -0.251 5.251 14 C 0.037 3.963 15 C -0.550 4.550 16 H 0.100 0.900 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.703 3.297 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.194 1.194 23 C -0.078 4.078 24 C -0.006 4.006 25 H 0.113 0.887 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.006 0.994 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.120 0.880 44 H 0.107 0.893 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.520 3.073 -22.972 23.182 hybrid contribution 0.730 -1.742 0.090 1.891 sum 1.250 1.331 -22.882 22.954 Atomic orbital electron populations 1.23678 0.95917 1.01239 0.99213 1.22619 0.96011 0.97050 1.01305 1.20157 0.96552 0.97052 0.92487 0.90129 1.21543 0.97869 1.01924 0.94039 1.21756 0.99823 1.02139 0.97093 1.21735 0.98756 1.04025 0.92824 1.20609 0.88993 0.76127 0.84346 1.90677 1.14770 1.50074 1.86208 1.48276 1.07423 1.72739 1.06145 1.21871 0.79698 1.00411 0.99047 1.22447 0.99151 0.96187 0.91507 1.61904 1.02339 1.55382 1.05497 1.20170 0.95803 0.89610 0.90718 1.21011 1.27367 1.16705 0.89942 0.90050 1.24898 0.95948 0.97102 0.95327 1.69888 1.43813 1.40856 0.99155 0.86863 0.81900 0.82956 0.78029 1.20102 1.21168 1.19367 1.22379 0.90241 0.95505 0.99643 1.21816 0.95072 1.00045 0.83695 0.88656 0.89303 0.88217 0.91833 0.91868 0.92822 0.92981 0.92411 0.88933 0.89059 0.90547 0.90142 0.90069 0.95513 0.99400 0.95660 0.92592 0.95790 0.88019 0.89330 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 13.22 29.01 0.38 -1.50 16 2 C -0.15 -1.66 6.76 -36.03 -0.24 -1.90 16 3 C -0.04 -0.43 1.82 -91.77 -0.17 -0.59 16 4 H 0.08 0.90 7.60 -51.93 -0.39 0.51 16 5 C -0.12 -0.87 5.39 -26.74 -0.14 -1.02 16 6 C -0.15 -1.10 9.73 37.16 0.36 -0.74 16 7 C -0.13 -1.32 3.53 -27.88 -0.10 -1.42 16 8 C 0.51 7.18 7.46 -10.98 -0.08 7.10 16 9 O -0.54 -9.17 13.62 5.56 0.08 -9.09 16 10 N -0.61 -8.87 3.01 -172.44 -0.52 -9.39 16 11 C 0.11 1.41 6.50 -3.60 -0.02 1.39 16 12 C 0.04 0.57 5.62 -3.70 -0.02 0.55 16 13 N -0.53 -10.52 4.62 -235.75 -1.09 -11.61 16 14 C 0.16 3.84 3.79 -4.98 -0.02 3.82 16 15 C -0.51 -14.19 8.96 -34.44 -0.31 -14.50 16 16 H 0.08 2.45 7.37 -52.49 -0.39 2.06 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 19 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 23 C 0.05 0.97 5.46 -3.69 -0.02 0.95 16 24 C 0.12 1.90 6.60 -3.58 -0.02 1.88 16 25 H 0.10 1.15 7.83 -52.48 -0.41 0.74 16 26 H 0.09 0.94 8.06 -52.49 -0.42 0.52 16 27 H 0.10 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 33 H 0.09 0.74 8.00 -51.93 -0.42 0.32 16 34 H 0.09 0.81 7.66 -51.93 -0.40 0.41 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.74 6.02 -51.93 -0.31 0.43 16 37 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 38 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 39 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 40 H 0.03 0.59 7.40 -51.93 -0.38 0.21 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 2.15 6.67 -51.93 -0.35 1.80 16 44 H 0.09 1.47 7.06 -51.93 -0.37 1.11 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 351.45 15.07 5.30 5.30 Total: -1.00 -31.48 351.45 -8.62 -40.10 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.98 Total: -1.27 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.50 Total: -4.12 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.83 Total: -47.38 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.48 -8.62 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333526058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.771 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds