Wall clock time and date at job start Tue Mar 31 2020 03:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 120.00176 * 2 1 4 4 H 1.09004 * 109.46923 * 359.97438 * 3 2 1 5 5 C 1.52991 * 109.46991 * 240.00169 * 3 2 1 6 6 C 1.52999 * 109.47754 * 64.99950 * 5 3 2 7 7 C 1.52999 * 109.47276 * 119.99638 * 3 2 1 8 8 C 1.50702 * 109.46960 * 295.00115 * 7 3 2 9 9 O 1.21282 * 120.00145 * 359.97438 * 8 7 3 10 10 N 1.34776 * 119.99795 * 179.97438 * 8 7 3 11 11 C 1.47081 * 120.88011 * 359.97438 * 10 8 7 12 12 C 1.53235 * 108.52054 * 231.20569 * 11 10 8 13 13 N 1.46906 * 109.34079 * 306.16959 * 12 11 10 14 14 C 1.46898 * 110.99801 * 187.25100 * 13 12 11 15 15 C 1.50700 * 109.46835 * 170.00134 * 14 13 12 16 16 H 1.08001 * 120.00412 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00313 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00149 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99689 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47324 * 89.99628 * 19 17 15 21 21 H 1.48497 * 109.47005 * 210.00209 * 19 17 15 22 22 H 1.48500 * 109.47246 * 329.99791 * 19 17 15 23 23 C 1.46896 * 111.26658 * 63.10656 * 13 12 11 24 24 C 1.47082 * 120.88489 * 179.97438 * 10 8 7 25 25 H 1.08005 * 119.99830 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.99689 * 180.02562 * 1 2 3 27 27 H 1.07995 * 119.99818 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46984 * 184.99854 * 5 3 2 29 29 H 1.09008 * 109.47126 * 304.99327 * 5 3 2 30 30 H 1.08994 * 109.47428 * 59.99727 * 6 5 3 31 31 H 1.08995 * 109.47377 * 180.02562 * 6 5 3 32 32 H 1.09005 * 109.46381 * 299.99744 * 6 5 3 33 33 H 1.09001 * 109.46860 * 175.00214 * 7 3 2 34 34 H 1.08992 * 109.46930 * 55.00143 * 7 3 2 35 35 H 1.09002 * 109.63012 * 111.50012 * 11 10 8 36 36 H 1.09000 * 109.63054 * 350.91275 * 11 10 8 37 37 H 1.08997 * 109.49554 * 186.21402 * 12 11 10 38 38 H 1.08997 * 109.49382 * 66.13002 * 12 11 10 39 39 H 1.08993 * 109.47768 * 290.00114 * 14 13 12 40 40 H 1.09004 * 109.47075 * 50.00431 * 14 13 12 41 41 H 0.97003 * 120.00014 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.49756 * 56.85119 * 23 13 12 43 43 H 1.08996 * 109.49111 * 176.93688 * 23 13 12 44 44 H 1.09001 * 109.62379 * 9.08505 * 24 10 8 45 45 H 1.08998 * 109.62760 * 248.50576 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9431 1.3861 -1.2492 6 6 2.0566 1.4307 -2.4953 7 6 2.9432 1.3862 1.2493 8 6 2.0697 1.4301 2.4766 9 8 0.8626 1.4001 2.3632 10 7 2.6301 1.5029 3.7002 11 6 4.0917 1.5398 3.8601 12 6 4.4977 0.4648 4.8738 13 7 3.7323 0.6513 6.1137 14 6 4.2129 -0.2498 7.1696 15 6 3.5815 0.1338 8.4831 16 1 2.8924 0.9641 8.5290 17 6 3.8842 -0.5746 9.6266 18 7 3.3335 -0.2396 10.7729 19 14 5.0777 -2.0095 9.5477 20 1 6.4589 -1.5182 9.7848 21 1 4.7217 -3.0072 10.5884 22 1 5.0013 -2.6438 8.2072 23 6 2.2927 0.4715 5.8833 24 6 1.7962 1.5473 4.9110 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.5541 2.2878 -1.2056 29 1 3.5907 0.5104 -1.2951 30 1 1.4091 2.3063 -2.4495 31 1 2.6832 1.4880 -3.3853 32 1 1.4457 0.5290 -2.5389 33 1 3.5541 2.2879 1.2056 34 1 3.5906 0.5106 1.2952 35 1 4.3954 2.5209 4.2255 36 1 4.5702 1.3387 2.9016 37 1 5.5631 0.5505 5.0878 38 1 4.2874 -0.5220 4.4614 39 1 3.9423 -1.2762 6.9225 40 1 5.2970 -0.1692 7.2504 41 1 3.5468 -0.7378 11.5774 42 1 2.1130 -0.5153 5.4567 43 1 1.7588 0.5621 6.8292 44 1 0.7570 1.3511 4.6472 45 1 1.8796 2.5291 5.3771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333526058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:54 Heat of formation + Delta-G solvation = -37.709337 kcal Electronic energy + Delta-G solvation = -22446.752523 eV Core-core repulsion = 19270.594686 eV Total energy + Delta-G solvation = -3176.157836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25821 -39.23373 -37.52981 -35.93005 -34.41726 -32.60289 -32.50342 -31.22521 -30.23047 -27.37414 -25.76608 -24.34018 -23.43161 -22.51267 -21.90330 -20.50072 -19.75665 -18.93456 -18.06899 -16.97811 -16.63718 -16.51084 -16.04164 -15.82440 -15.62457 -15.53565 -15.14564 -14.76254 -14.50953 -14.47051 -14.34611 -13.86953 -13.56398 -13.19969 -12.98946 -12.87751 -12.80985 -12.49864 -12.35063 -12.24241 -12.06444 -12.01720 -11.89113 -11.85921 -11.63561 -11.45280 -11.33399 -10.80066 -10.73116 -10.02343 -9.68916 -9.05974 -8.28776 -6.32662 1.34699 1.36614 1.46611 1.54749 1.73432 2.03395 2.33923 3.03688 3.15718 3.55440 3.86048 3.92513 4.00280 4.05855 4.21724 4.28232 4.39076 4.40385 4.41835 4.48271 4.52372 4.63912 4.67897 4.73898 4.81095 4.85275 4.87864 4.94983 5.00910 5.03044 5.09219 5.10014 5.13573 5.22139 5.42570 5.49055 5.49723 5.52077 5.84820 5.92867 6.06463 6.26403 6.50998 6.63673 6.73936 7.25113 7.31059 8.87751 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.003360 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.729961 B = 8332.005043 C = 8510.986005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.149 4.149 3 C -0.043 4.043 4 H 0.061 0.939 5 C -0.110 4.110 6 C -0.152 4.152 7 C -0.126 4.126 8 C 0.505 3.495 9 O -0.576 6.576 10 N -0.616 5.616 11 C 0.117 3.883 12 C 0.032 3.968 13 N -0.540 5.540 14 C 0.173 3.827 15 C -0.518 4.518 16 H 0.038 0.962 17 C 0.007 3.993 18 N -0.948 5.948 19 Si 0.949 3.051 20 H -0.261 1.261 21 H -0.285 1.285 22 H -0.253 1.253 23 C 0.060 3.940 24 C 0.128 3.872 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.028 0.972 39 H -0.017 1.017 40 H 0.037 0.963 41 H 0.267 0.733 42 H 0.016 0.984 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.165 2.076 -25.933 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.167 4.167 3 C -0.062 4.062 4 H 0.079 0.921 5 C -0.147 4.147 6 C -0.210 4.210 7 C -0.165 4.165 8 C 0.295 3.705 9 O -0.456 6.456 10 N -0.349 5.349 11 C -0.005 4.005 12 C -0.096 4.096 13 N -0.265 5.265 14 C 0.046 3.954 15 C -0.556 4.556 16 H 0.056 0.944 17 C -0.191 4.191 18 N -0.589 5.589 19 Si 0.772 3.228 20 H -0.185 1.185 21 H -0.211 1.211 22 H -0.176 1.176 23 C -0.069 4.069 24 C 0.004 3.996 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.128 0.872 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.118 0.882 38 H 0.046 0.954 39 H 0.001 0.999 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.604 2.505 -25.670 26.043 hybrid contribution -0.317 -1.488 0.906 1.771 sum 3.288 1.017 -24.764 25.002 Atomic orbital electron populations 1.23689 0.96586 1.00854 1.00948 1.22878 0.95872 0.98179 0.99751 1.20162 0.96593 0.95556 0.93852 0.92059 1.21514 0.97511 1.03285 0.92390 1.21767 0.99935 1.01430 0.97852 1.21814 0.98273 1.06489 0.89957 1.21458 0.89105 0.74817 0.85090 1.90676 1.16731 1.51463 1.86683 1.48379 1.08213 1.72799 1.05538 1.22050 0.78370 0.99638 1.00412 1.22649 0.99525 0.97522 0.89941 1.61807 1.02880 1.54541 1.07269 1.19930 0.95878 0.89778 0.89818 1.21270 1.26598 1.15356 0.92417 0.94355 1.25868 0.98078 1.00384 0.94726 1.70052 1.45930 1.42755 1.00157 0.85691 0.79537 0.78875 0.78665 1.18534 1.21086 1.17648 1.22198 0.89984 0.96128 0.98605 1.21477 0.95094 0.98709 0.84319 0.89952 0.89018 0.87208 0.90195 0.90658 0.93408 0.91694 0.93363 0.85869 0.86761 0.89903 0.85473 0.88232 0.95364 0.99938 0.94452 0.92443 0.96550 0.91557 0.90133 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.25 13.22 67.77 0.90 -3.36 16 2 C -0.15 -3.01 6.76 25.64 0.17 -2.84 16 3 C -0.04 -0.72 1.82 -11.54 -0.02 -0.74 16 4 H 0.06 1.29 7.60 -2.38 -0.02 1.27 16 5 C -0.11 -1.25 5.39 30.59 0.16 -1.08 16 6 C -0.15 -1.90 9.73 71.98 0.70 -1.20 16 7 C -0.13 -1.97 3.53 29.85 0.11 -1.86 16 8 C 0.50 13.06 7.46 87.66 0.65 13.72 16 9 O -0.58 -19.31 13.62 -3.04 -0.04 -19.35 16 10 N -0.62 -16.53 3.01 -817.87 -2.46 -18.99 16 11 C 0.12 2.46 6.50 86.35 0.56 3.02 16 12 C 0.03 0.90 5.62 86.38 0.49 1.38 16 13 N -0.54 -21.22 4.62 -899.78 -4.16 -25.38 16 14 C 0.17 8.02 3.79 85.56 0.32 8.35 16 15 C -0.52 -29.55 8.96 25.60 0.23 -29.33 16 16 H 0.04 2.45 7.37 -2.91 -0.02 2.43 16 17 C 0.01 0.39 5.47 84.66 0.46 0.85 16 18 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 19 Si 0.95 43.32 27.47 68.60 1.88 45.20 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 23 C 0.06 2.34 5.46 86.39 0.47 2.82 16 24 C 0.13 4.21 6.60 86.36 0.57 4.78 16 25 H 0.08 2.08 7.83 -2.91 -0.02 2.05 16 26 H 0.09 1.98 8.06 -2.91 -0.02 1.95 16 27 H 0.11 1.99 8.06 -2.91 -0.02 1.96 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.68 7.38 -2.38 -0.02 0.67 16 33 H 0.12 1.25 8.00 -2.39 -0.02 1.23 16 34 H 0.11 1.35 7.66 -2.39 -0.02 1.33 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.13 1.53 6.02 -2.39 -0.01 1.52 16 37 H 0.10 2.44 7.99 -2.39 -0.02 2.42 16 38 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 39 H -0.02 -0.81 7.18 -2.39 -0.02 -0.82 16 40 H 0.04 1.65 7.40 -2.39 -0.02 1.64 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 3.01 6.67 -2.39 -0.02 3.00 16 44 H 0.08 2.78 7.06 -2.39 -0.02 2.76 16 45 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -71.69 351.45 2.17 -69.51 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.87 Total: 13.28 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.78 Total: -5.49 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -6.32 Total: -103.16 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.04 Total: -19.35 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Total: -71.69 2.17 -69.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333526058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.806 kcal (2) G-P(sol) polarization free energy of solvation -71.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds