Wall clock time and date at job start Tue Mar 31 2020 01:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47044 * 2 1 4 4 C 1.53003 * 109.46779 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55059 * 29.33003 * 4 3 2 6 6 C 1.53004 * 117.49451 * 243.62178 * 4 3 2 7 7 C 1.53003 * 117.49859 * 175.00006 * 4 3 2 8 8 H 1.09007 * 117.49563 * 359.97438 * 7 4 3 9 9 C 1.50697 * 117.50334 * 214.97611 * 7 4 3 10 10 O 1.21287 * 119.99593 * 0.02562 * 9 7 4 11 11 N 1.34770 * 120.00095 * 179.97438 * 9 7 4 12 12 C 1.46506 * 119.99835 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.46787 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47551 * 294.99763 * 13 12 11 15 15 N 1.46496 * 109.47419 * 55.00167 * 13 12 11 16 16 C 1.36935 * 120.00221 * 204.99602 * 15 13 12 17 17 H 1.08001 * 120.00176 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00382 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00240 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99684 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 90.00337 * 20 18 16 22 22 H 1.48503 * 109.47399 * 209.99827 * 20 18 16 23 23 H 1.48498 * 109.47295 * 330.00433 * 20 18 16 24 24 C 1.53004 * 109.46731 * 174.99900 * 13 12 11 25 25 C 1.53001 * 117.49746 * 248.74630 * 24 13 12 26 26 C 1.53003 * 117.49917 * 180.08551 * 24 13 12 27 27 H 1.09004 * 109.47380 * 300.00090 * 1 2 3 28 28 H 1.09001 * 109.47248 * 60.00067 * 1 2 3 29 29 H 1.09002 * 109.47385 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46783 * 240.00374 * 2 1 3 31 31 H 1.08999 * 109.47259 * 120.00480 * 2 1 3 32 32 H 1.08993 * 109.46781 * 60.00442 * 3 2 1 33 33 H 1.09001 * 109.47044 * 300.00058 * 3 2 1 34 34 H 1.09004 * 117.49368 * 145.02661 * 6 4 3 35 35 H 1.08994 * 117.50016 * 0.02562 * 6 4 3 36 36 H 0.97000 * 120.00278 * 0.02562 * 11 9 7 37 37 H 1.08999 * 109.47243 * 59.99922 * 12 11 9 38 38 H 1.09003 * 109.46827 * 299.99872 * 12 11 9 39 39 H 0.97000 * 120.00132 * 24.99268 * 15 13 12 40 40 H 0.97000 * 119.99717 * 180.02562 * 19 18 16 41 41 H 1.08997 * 115.55280 * 34.41951 * 24 13 12 42 42 H 1.09001 * 117.50062 * 359.97438 * 25 24 13 43 43 H 1.08998 * 117.49903 * 145.02149 * 25 24 13 44 44 H 1.08995 * 117.50440 * 214.97886 * 26 24 13 45 45 H 1.09000 * 117.49556 * 359.97438 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 4.0398 0.5852 -0.4827 6 6 4.2769 2.0453 1.2151 7 6 4.2764 2.7944 -0.1190 8 1 3.6511 3.6839 -0.1969 9 6 5.5689 2.8389 -0.8926 10 8 6.0110 1.8265 -1.3934 11 7 6.2330 4.0037 -1.0288 12 6 7.4893 4.0469 -1.7814 13 6 8.0335 5.4768 -1.7834 14 1 7.3482 6.1257 -2.3287 15 7 8.1624 5.9523 -0.4037 16 6 8.1267 7.2947 -0.1359 17 1 8.0031 8.0030 -0.9418 18 6 8.2483 7.7452 1.1714 19 7 8.2135 9.0355 1.4289 20 14 8.4600 6.5200 2.5656 21 1 9.9063 6.2623 2.7827 22 1 7.8644 7.0754 3.8074 23 1 7.7778 5.2485 2.2150 24 6 9.4052 5.4994 -2.4608 25 6 10.6234 5.7852 -1.5802 26 6 10.1214 6.8477 -2.5613 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9562 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 5.2121 1.5844 1.5330 35 1 3.6520 2.4414 2.0154 36 1 5.8793 4.8134 -0.6287 37 1 7.3097 3.7247 -2.8070 38 1 8.2160 3.3826 -1.3137 39 1 8.2730 5.3161 0.3202 40 1 8.2989 9.3502 2.3424 41 1 9.5338 4.7986 -3.2857 42 1 10.4475 5.9576 -0.5184 43 1 11.5534 5.2727 -1.8260 44 1 10.7215 7.0338 -3.4520 45 1 9.6152 7.7187 -2.1451 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480045219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:58 Heat of formation + Delta-G solvation = 7.317268 kcal Electronic energy + Delta-G solvation = -21978.005018 eV Core-core repulsion = 18803.799682 eV Total energy + Delta-G solvation = -3174.205336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.87119 -38.01492 -37.05705 -34.55599 -34.00108 -33.29176 -31.17464 -28.85741 -27.58833 -24.66520 -23.06942 -22.32172 -22.00285 -21.47783 -20.61997 -19.95813 -19.15190 -17.80461 -16.95568 -15.79625 -15.51720 -15.35293 -14.85012 -14.78675 -14.44409 -14.22470 -13.57132 -13.51491 -13.27603 -12.85153 -12.77224 -12.55223 -12.32463 -12.14297 -11.60220 -11.47853 -11.24270 -11.19241 -11.02983 -10.98784 -10.82422 -10.59957 -10.30226 -10.25647 -10.08463 -9.71957 -9.59913 -9.49867 -9.22624 -9.04381 -8.73724 -7.40362 -5.86217 -3.23152 2.68857 3.30111 3.34428 3.36265 3.40644 3.83794 4.48097 4.49893 4.52598 4.69808 4.75633 4.90539 4.96575 5.10438 5.19649 5.21820 5.30983 5.34739 5.41407 5.52075 5.60000 5.64549 5.66717 5.67670 5.74296 5.82831 5.84517 5.90353 5.94636 5.99180 6.02737 6.05636 6.25816 6.28431 6.35812 6.55842 6.61955 6.80827 6.99391 7.11840 7.84650 7.89780 8.32142 8.49004 9.09755 9.81936 10.01253 11.31440 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.003993 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.847913 B = 7010.152170 C = 8025.823811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.116 0.884 6 C -0.149 4.149 7 C -0.189 4.189 8 H 0.123 0.877 9 C 0.539 3.461 10 O -0.555 6.555 11 N -0.712 5.712 12 C 0.116 3.884 13 C 0.198 3.802 14 H 0.066 0.934 15 N -0.743 5.743 16 C -0.244 4.244 17 H 0.093 0.907 18 C 0.010 3.990 19 N -0.930 5.930 20 Si 0.878 3.122 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.276 1.276 24 C -0.178 4.178 25 C -0.165 4.165 26 C -0.170 4.170 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.411 0.589 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.363 0.637 40 H 0.260 0.740 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.822 -13.849 -3.658 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.138 4.138 5 H 0.134 0.866 6 C -0.186 4.186 7 C -0.210 4.210 8 H 0.141 0.859 9 C 0.325 3.675 10 O -0.434 6.434 11 N -0.363 5.363 12 C -0.008 4.008 13 C 0.088 3.912 14 H 0.084 0.916 15 N -0.386 5.386 16 C -0.374 4.374 17 H 0.111 0.889 18 C -0.186 4.186 19 N -0.577 5.577 20 Si 0.708 3.292 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.200 4.200 25 C -0.202 4.202 26 C -0.207 4.207 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.247 0.753 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.128 0.872 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.522 -14.276 -4.026 17.627 hybrid contribution 0.257 -0.200 1.269 1.311 sum -9.266 -14.477 -2.756 17.408 Atomic orbital electron populations 1.21783 0.95944 1.01531 1.01799 1.21499 0.95567 0.96607 1.02282 1.21245 0.92063 0.97230 1.02235 1.22423 0.94492 0.95569 1.01274 0.86567 1.23085 1.03025 1.02105 0.90428 1.22309 0.97967 0.98656 1.02036 0.85912 1.19621 0.84682 0.83283 0.79872 1.90652 1.69074 1.34200 1.49463 1.45952 1.24358 1.11158 1.54837 1.21633 0.84930 0.98451 0.95825 1.19957 0.92910 0.91385 0.86950 0.91641 1.42844 1.88674 1.05151 1.01931 1.19008 1.42813 0.81726 0.93818 0.88921 1.24638 1.01789 0.95353 0.96826 1.69686 1.56639 1.11845 1.19495 0.86664 0.78104 0.81146 0.83263 1.21110 1.21822 1.20260 1.23007 0.95449 0.99784 1.01745 1.22844 0.95453 1.02709 0.99243 1.22903 1.03531 0.94040 1.00226 0.92776 0.92747 0.92833 0.91845 0.91854 0.91612 0.91407 0.88412 0.87870 0.75321 0.91464 0.91822 0.80358 0.92988 0.89339 0.87240 0.91064 0.90835 0.87287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.15 0.37 -0.70 16 2 C -0.12 -0.98 5.89 -26.73 -0.16 -1.14 16 3 C -0.09 -0.81 5.50 -26.73 -0.15 -0.95 16 4 C -0.12 -1.34 5.25 -90.61 -0.48 -1.81 16 5 H 0.12 1.48 7.60 -51.93 -0.39 1.08 16 6 C -0.15 -1.71 9.88 -26.73 -0.26 -1.98 16 7 C -0.19 -2.40 5.91 -91.77 -0.54 -2.94 16 8 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 9 C 0.54 8.64 7.61 -10.99 -0.08 8.56 16 10 O -0.55 -10.50 16.26 5.55 0.09 -10.41 16 11 N -0.71 -11.32 5.39 -60.29 -0.32 -11.64 16 12 C 0.12 1.88 5.22 -4.04 -0.02 1.86 16 13 C 0.20 3.49 2.86 -67.93 -0.19 3.30 16 14 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 15 N -0.74 -15.58 2.88 -53.43 -0.15 -15.74 16 16 C -0.24 -6.15 8.64 -15.06 -0.13 -6.28 16 17 H 0.09 2.54 7.14 -52.49 -0.37 2.16 16 18 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 19 N -0.93 -27.61 13.97 55.49 0.78 -26.83 16 20 Si 0.88 21.00 27.73 -169.99 -4.71 16.28 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 24 C -0.18 -3.00 5.71 -90.62 -0.52 -3.51 16 25 C -0.17 -2.98 9.74 -26.69 -0.26 -3.24 16 26 C -0.17 -3.03 9.87 -26.69 -0.26 -3.29 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.55 7.88 -51.93 -0.41 0.14 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.10 1.01 8.03 -51.93 -0.42 0.59 16 36 H 0.41 6.49 8.14 -40.82 -0.33 6.16 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.36 7.82 5.66 -40.82 -0.23 7.59 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.09 1.32 8.11 -51.93 -0.42 0.89 16 42 H 0.11 2.30 6.68 -51.93 -0.35 1.95 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.11 2.26 6.22 -51.93 -0.32 1.94 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -29.44 364.00 -9.54 -38.98 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -7.91 Total: 15.84 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -2.78 Total: -11.96 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.30 Total: -54.21 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.71 Total: 16.28 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.44 -9.54 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480045219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.294 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds