Wall clock time and date at job start Tue Mar 31 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47044 * 2 1 4 4 C 1.53003 * 109.46779 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55059 * 29.33003 * 4 3 2 6 6 C 1.53004 * 117.49451 * 243.62178 * 4 3 2 7 7 C 1.53003 * 117.49859 * 175.00006 * 4 3 2 8 8 H 1.09007 * 117.49563 * 359.97438 * 7 4 3 9 9 C 1.50697 * 117.50334 * 214.97611 * 7 4 3 10 10 O 1.21287 * 119.99593 * 0.02562 * 9 7 4 11 11 N 1.34770 * 120.00095 * 179.97438 * 9 7 4 12 12 C 1.46506 * 119.99835 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.46787 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47551 * 294.99763 * 13 12 11 15 15 N 1.46496 * 109.47419 * 55.00167 * 13 12 11 16 16 C 1.36935 * 120.00221 * 204.99602 * 15 13 12 17 17 H 1.08001 * 120.00176 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00382 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00240 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99684 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 90.00337 * 20 18 16 22 22 H 1.48503 * 109.47399 * 209.99827 * 20 18 16 23 23 H 1.48498 * 109.47295 * 330.00433 * 20 18 16 24 24 C 1.53004 * 109.46731 * 174.99900 * 13 12 11 25 25 C 1.53001 * 117.49746 * 248.74630 * 24 13 12 26 26 C 1.53003 * 117.49917 * 180.08551 * 24 13 12 27 27 H 1.09004 * 109.47380 * 300.00090 * 1 2 3 28 28 H 1.09001 * 109.47248 * 60.00067 * 1 2 3 29 29 H 1.09002 * 109.47385 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46783 * 240.00374 * 2 1 3 31 31 H 1.08999 * 109.47259 * 120.00480 * 2 1 3 32 32 H 1.08993 * 109.46781 * 60.00442 * 3 2 1 33 33 H 1.09001 * 109.47044 * 300.00058 * 3 2 1 34 34 H 1.09004 * 117.49368 * 145.02661 * 6 4 3 35 35 H 1.08994 * 117.50016 * 0.02562 * 6 4 3 36 36 H 0.97000 * 120.00278 * 0.02562 * 11 9 7 37 37 H 1.08999 * 109.47243 * 59.99922 * 12 11 9 38 38 H 1.09003 * 109.46827 * 299.99872 * 12 11 9 39 39 H 0.97000 * 120.00132 * 24.99268 * 15 13 12 40 40 H 0.97000 * 119.99717 * 180.02562 * 19 18 16 41 41 H 1.08997 * 115.55280 * 34.41951 * 24 13 12 42 42 H 1.09001 * 117.50062 * 359.97438 * 25 24 13 43 43 H 1.08998 * 117.49903 * 145.02149 * 25 24 13 44 44 H 1.08995 * 117.50440 * 214.97886 * 26 24 13 45 45 H 1.09000 * 117.49556 * 359.97438 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 4.0398 0.5852 -0.4827 6 6 4.2769 2.0453 1.2151 7 6 4.2764 2.7944 -0.1190 8 1 3.6511 3.6839 -0.1969 9 6 5.5689 2.8389 -0.8926 10 8 6.0110 1.8265 -1.3934 11 7 6.2330 4.0037 -1.0288 12 6 7.4893 4.0469 -1.7814 13 6 8.0335 5.4768 -1.7834 14 1 7.3482 6.1257 -2.3287 15 7 8.1624 5.9523 -0.4037 16 6 8.1267 7.2947 -0.1359 17 1 8.0031 8.0030 -0.9418 18 6 8.2483 7.7452 1.1714 19 7 8.2135 9.0355 1.4289 20 14 8.4600 6.5200 2.5656 21 1 9.9063 6.2623 2.7827 22 1 7.8644 7.0754 3.8074 23 1 7.7778 5.2485 2.2150 24 6 9.4052 5.4994 -2.4608 25 6 10.6234 5.7852 -1.5802 26 6 10.1214 6.8477 -2.5613 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9562 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 5.2121 1.5844 1.5330 35 1 3.6520 2.4414 2.0154 36 1 5.8793 4.8134 -0.6287 37 1 7.3097 3.7247 -2.8070 38 1 8.2160 3.3826 -1.3137 39 1 8.2730 5.3161 0.3202 40 1 8.2989 9.3502 2.3424 41 1 9.5338 4.7986 -3.2857 42 1 10.4475 5.9576 -0.5184 43 1 11.5534 5.2727 -1.8260 44 1 10.7215 7.0338 -3.4520 45 1 9.6152 7.7187 -2.1451 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480045219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:57 Heat of formation + Delta-G solvation = -9.302734 kcal Electronic energy + Delta-G solvation = -21978.725715 eV Core-core repulsion = 18803.799682 eV Total energy + Delta-G solvation = -3174.926033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08150 -39.42941 -38.12226 -35.93859 -35.09990 -34.72305 -32.99601 -30.39913 -28.35117 -25.99444 -24.81586 -23.56880 -22.98316 -22.69416 -21.51235 -21.20366 -20.63537 -19.58933 -18.22393 -17.11517 -16.93665 -16.44995 -16.11433 -16.08465 -15.74708 -15.52568 -14.96592 -14.73734 -14.52891 -14.31007 -14.12745 -13.69797 -13.23553 -13.07572 -12.96582 -12.91844 -12.65388 -12.52324 -12.19969 -12.13850 -12.05467 -11.94233 -11.67211 -11.63911 -11.21023 -11.09707 -11.04870 -10.96405 -10.74949 -10.63341 -10.05710 -9.33199 -7.97272 -5.30257 1.38383 1.40648 1.46815 1.49213 2.18055 2.49902 2.86198 3.06713 3.35641 3.56193 3.66168 3.76797 3.84932 3.87860 4.16053 4.20709 4.24458 4.29262 4.30199 4.38557 4.45098 4.53035 4.63069 4.64140 4.81750 4.85877 4.87917 4.94515 4.95730 4.99438 5.06167 5.13878 5.19027 5.21352 5.36582 5.40992 5.43145 5.51772 5.54267 5.60012 5.86786 6.25305 6.57015 7.10874 7.22677 7.84894 8.03924 9.23874 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.003993 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.847913 B = 7010.152170 C = 8025.823811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.110 4.110 5 H 0.098 0.902 6 C -0.144 4.144 7 C -0.201 4.201 8 H 0.141 0.859 9 C 0.536 3.464 10 O -0.587 6.587 11 N -0.713 5.713 12 C 0.125 3.875 13 C 0.198 3.802 14 H 0.062 0.938 15 N -0.740 5.740 16 C -0.206 4.206 17 H 0.065 0.935 18 C -0.055 4.055 19 N -0.982 5.982 20 Si 0.939 3.061 21 H -0.290 1.290 22 H -0.302 1.302 23 H -0.253 1.253 24 C -0.165 4.165 25 C -0.171 4.171 26 C -0.175 4.175 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.411 0.589 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.364 0.636 40 H 0.254 0.746 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 -15.833 -4.082 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.123 4.123 4 C -0.129 4.129 5 H 0.116 0.884 6 C -0.181 4.181 7 C -0.222 4.222 8 H 0.159 0.841 9 C 0.324 3.676 10 O -0.469 6.469 11 N -0.363 5.363 12 C 0.001 3.999 13 C 0.089 3.911 14 H 0.080 0.920 15 N -0.383 5.383 16 C -0.337 4.337 17 H 0.083 0.917 18 C -0.246 4.246 19 N -0.633 5.633 20 Si 0.769 3.231 21 H -0.217 1.217 22 H -0.229 1.229 23 H -0.178 1.178 24 C -0.186 4.186 25 C -0.209 4.209 26 C -0.212 4.212 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.144 0.856 36 H 0.248 0.752 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.197 0.803 40 H 0.063 0.937 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.328 -16.305 -4.487 19.816 hybrid contribution 0.524 0.407 1.270 1.433 sum -9.805 -15.898 -3.217 18.953 Atomic orbital electron populations 1.21769 0.94984 1.02046 1.02098 1.21492 0.96380 0.96005 1.02067 1.21249 0.90171 0.97943 1.02911 1.22433 0.95815 0.93995 1.00625 0.88350 1.23184 1.02939 1.01430 0.90591 1.22374 0.96849 1.00246 1.02682 0.84113 1.20154 0.85408 0.82555 0.79455 1.90634 1.70157 1.35170 1.50914 1.45984 1.24232 1.11327 1.54743 1.21514 0.84983 0.96736 0.96714 1.20089 0.93693 0.92286 0.85005 0.91990 1.42772 1.88487 1.03413 1.03614 1.18882 1.39109 0.83062 0.92627 0.91687 1.25255 1.03368 0.96666 0.99338 1.69848 1.59871 1.14027 1.19521 0.85653 0.77623 0.79911 0.79955 1.21670 1.22904 1.17774 1.23013 0.94035 0.99568 1.01973 1.22801 0.97235 1.03355 0.97473 1.22829 1.04164 0.93091 1.01149 0.92283 0.92635 0.92274 0.92449 0.91774 0.90402 0.91201 0.89583 0.85629 0.75216 0.89983 0.92374 0.80284 0.93651 0.86072 0.90493 0.88442 0.88081 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.12 -1.74 5.89 30.59 0.18 -1.56 16 3 C -0.09 -1.33 5.50 30.60 0.17 -1.16 16 4 C -0.11 -2.29 5.25 -10.79 -0.06 -2.34 16 5 H 0.10 2.43 7.60 -2.39 -0.02 2.41 16 6 C -0.14 -3.01 9.88 30.60 0.30 -2.70 16 7 C -0.20 -4.72 5.91 -11.54 -0.07 -4.79 16 8 H 0.14 2.78 8.14 -2.38 -0.02 2.76 16 9 C 0.54 16.42 7.61 87.66 0.67 17.09 16 10 O -0.59 -21.64 16.26 -3.05 -0.05 -21.69 16 11 N -0.71 -21.44 5.39 -463.06 -2.49 -23.94 16 12 C 0.12 3.78 5.22 86.38 0.45 4.23 16 13 C 0.20 6.67 2.86 44.99 0.13 6.79 16 14 H 0.06 2.18 8.08 -2.39 -0.02 2.16 16 15 N -0.74 -30.42 2.88 -322.94 -0.93 -31.35 16 16 C -0.21 -10.49 8.64 84.03 0.73 -9.76 16 17 H 0.07 3.67 7.14 -2.91 -0.02 3.65 16 18 C -0.05 -3.02 5.50 84.86 0.47 -2.55 16 19 N -0.98 -60.09 13.97 21.65 0.30 -59.79 16 20 Si 0.94 43.72 27.73 68.60 1.90 45.62 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 23 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 24 C -0.16 -5.15 5.71 -10.79 -0.06 -5.21 16 25 C -0.17 -5.89 9.74 30.62 0.30 -5.60 16 26 C -0.18 -6.02 9.87 30.62 0.30 -5.72 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.05 7.88 -2.39 -0.02 1.03 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.13 2.05 8.03 -2.39 -0.02 2.03 16 36 H 0.41 12.33 8.14 -92.71 -0.75 11.58 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.36 15.10 5.66 -92.71 -0.52 14.58 16 40 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.12 3.09 8.11 -2.39 -0.02 3.08 16 42 H 0.08 3.18 6.68 -2.39 -0.02 3.17 16 43 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 45 H 0.07 3.04 6.22 -2.39 -0.01 3.03 16 Total: -1.00 -64.52 364.00 2.58 -61.94 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: -0.37 Total: 43.60 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 4.22 Total: -14.38 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -3.12 Total: -115.08 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.90 Total: 45.62 kcal Total: -64.52 2.58 -61.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480045219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.633 kcal (2) G-P(sol) polarization free energy of solvation -64.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds