Wall clock time and date at job start Tue Mar 31 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47103 * 2 1 4 4 C 1.53005 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.54886 * 29.32479 * 4 3 2 6 6 C 1.53005 * 117.49935 * 243.62413 * 4 3 2 7 7 C 1.53001 * 117.50059 * 175.00185 * 4 3 2 8 8 H 1.08995 * 117.50130 * 359.97252 * 7 4 3 9 9 C 1.50707 * 117.49691 * 214.97919 * 7 4 3 10 10 O 1.21283 * 119.99863 * 359.97438 * 9 7 4 11 11 N 1.34770 * 119.99790 * 180.02562 * 9 7 4 12 12 C 1.46498 * 119.99990 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.47559 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47163 * 64.99854 * 13 12 11 15 15 N 1.46506 * 109.47100 * 304.99754 * 13 12 11 16 16 C 1.36939 * 120.00073 * 154.72214 * 15 13 12 17 17 H 1.08004 * 119.99859 * 0.02562 * 16 15 13 18 18 C 1.38805 * 119.99849 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00455 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00168 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46991 * 59.99625 * 20 18 16 22 22 H 1.48497 * 109.47469 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46948 * 299.99895 * 20 18 16 24 24 C 1.52997 * 109.47602 * 185.00002 * 13 12 11 25 25 C 1.53000 * 117.49897 * 248.74886 * 24 13 12 26 26 C 1.53006 * 117.50330 * 180.08667 * 24 13 12 27 27 H 1.08996 * 109.47424 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46809 * 300.00236 * 1 2 3 29 29 H 1.09004 * 109.46749 * 59.99780 * 1 2 3 30 30 H 1.08999 * 109.46809 * 239.99764 * 2 1 3 31 31 H 1.09004 * 109.46749 * 120.00220 * 2 1 3 32 32 H 1.08999 * 109.47481 * 60.00175 * 3 2 1 33 33 H 1.08996 * 109.47459 * 299.99441 * 3 2 1 34 34 H 1.08993 * 117.50107 * 145.01866 * 6 4 3 35 35 H 1.09001 * 117.49642 * 359.97438 * 6 4 3 36 36 H 0.96997 * 120.00001 * 359.97438 * 11 9 7 37 37 H 1.09002 * 109.47284 * 59.99149 * 12 11 9 38 38 H 1.09004 * 109.47146 * 299.99834 * 12 11 9 39 39 H 0.97005 * 119.99811 * 335.00008 * 15 13 12 40 40 H 0.97000 * 120.00679 * 179.97438 * 19 18 16 41 41 H 1.09000 * 115.55214 * 34.41012 * 24 13 12 42 42 H 1.09000 * 117.50268 * 359.97438 * 25 24 13 43 43 H 1.09007 * 117.50040 * 145.01782 * 25 24 13 44 44 H 1.08994 * 117.49645 * 214.98137 * 26 24 13 45 45 H 1.09001 * 117.49573 * 359.97438 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0404 0.5850 -0.4807 6 6 4.2760 2.0455 1.2167 7 6 4.2766 2.7944 -0.1175 8 1 3.6515 3.6838 -0.1961 9 6 5.5698 2.8385 -0.8901 10 8 6.0127 1.8258 -1.3895 11 7 6.2346 4.0030 -1.0253 12 6 7.4914 4.0460 -1.7768 13 6 8.0358 5.4758 -1.7788 14 1 8.2981 5.7662 -0.7615 15 7 7.0130 6.3870 -2.2985 16 6 7.0269 7.7084 -1.9391 17 1 7.7920 8.0788 -1.2729 18 6 6.0575 8.5716 -2.4310 19 7 5.1254 8.1202 -3.2433 20 14 6.0767 10.3742 -1.9414 21 1 7.3575 10.9903 -2.3716 22 1 4.9449 11.0773 -2.5970 23 1 5.9434 10.4880 -0.4668 24 6 9.2801 5.5466 -2.6662 25 6 10.6260 5.7834 -1.9781 26 6 9.9779 6.9019 -2.7980 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 5.2109 1.5849 1.5357 35 1 3.6504 2.4427 2.0161 36 1 5.8805 4.8128 -0.6256 37 1 7.3125 3.7242 -2.8027 38 1 8.2175 3.3811 -1.3089 39 1 6.3237 6.0535 -2.8939 40 1 4.4477 8.7234 -3.5868 41 1 9.2702 4.8984 -3.5425 42 1 10.6249 5.8892 -0.8933 43 1 11.5015 5.2914 -2.4020 44 1 10.4270 7.1452 -3.7608 45 1 9.5501 7.7433 -2.2527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480045220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:02 Heat of formation + Delta-G solvation = 0.047470 kcal Electronic energy + Delta-G solvation = -21759.446244 eV Core-core repulsion = 18584.925666 eV Total energy + Delta-G solvation = -3174.520578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.74394 -37.81044 -36.93505 -34.60535 -33.91620 -33.35678 -30.94051 -28.35088 -27.43020 -24.55106 -23.25760 -22.17207 -21.81337 -21.64699 -20.53601 -19.99890 -19.29773 -17.45748 -16.83286 -15.67983 -15.32884 -15.21032 -14.82070 -14.70888 -14.31322 -14.11251 -13.57531 -13.40911 -13.20032 -13.06257 -12.68170 -12.38777 -12.06931 -11.99806 -11.41887 -11.38218 -11.16630 -11.11843 -10.94306 -10.88938 -10.86459 -10.71824 -10.21877 -10.17176 -9.98467 -9.94498 -9.67589 -9.42167 -9.28613 -8.99202 -8.58659 -7.06571 -5.83119 -3.12846 2.80664 3.38293 3.43714 3.44772 3.52028 3.91413 4.40085 4.58067 4.58518 4.78475 4.84620 4.98664 5.05480 5.19328 5.23244 5.35039 5.42557 5.46867 5.51335 5.59561 5.61638 5.67913 5.70029 5.75279 5.76350 5.89483 5.91352 5.97289 6.04266 6.07306 6.10595 6.14524 6.17298 6.35197 6.40958 6.54209 6.60305 6.76924 6.93630 6.97973 7.62592 7.99652 8.33640 8.63040 9.45755 10.00041 10.36322 11.38574 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.003895 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.787525 B = 7186.071503 C = 8621.865510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.119 4.119 5 H 0.116 0.884 6 C -0.150 4.150 7 C -0.187 4.187 8 H 0.124 0.876 9 C 0.540 3.460 10 O -0.558 6.558 11 N -0.708 5.708 12 C 0.119 3.881 13 C 0.193 3.807 14 H 0.055 0.945 15 N -0.716 5.716 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.009 4.009 19 N -0.929 5.929 20 Si 0.903 3.097 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.159 4.159 25 C -0.196 4.196 26 C -0.156 4.156 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.411 0.589 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 -11.886 7.776 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.129 4.129 4 C -0.137 4.137 5 H 0.134 0.866 6 C -0.188 4.188 7 C -0.208 4.208 8 H 0.142 0.858 9 C 0.326 3.674 10 O -0.437 6.437 11 N -0.358 5.358 12 C -0.006 4.006 13 C 0.083 3.917 14 H 0.073 0.927 15 N -0.357 5.357 16 C -0.369 4.369 17 H 0.088 0.912 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.181 4.181 25 C -0.234 4.234 26 C -0.193 4.193 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.247 0.753 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.961 -12.397 7.475 14.609 hybrid contribution -0.269 1.558 -0.026 1.582 sum -2.229 -10.839 7.449 13.339 Atomic orbital electron populations 1.21785 0.95982 1.01464 1.01843 1.21496 0.95549 0.96653 1.02203 1.21249 0.92112 0.97162 1.02339 1.22404 0.94510 0.95730 1.01087 0.86607 1.23066 1.02914 1.02375 0.90440 1.22323 0.98077 0.98758 1.01606 0.85758 1.19590 0.84561 0.83311 0.79942 1.90643 1.69021 1.34362 1.49677 1.45899 1.24341 1.10984 1.54603 1.21589 0.84938 0.97923 0.96121 1.20047 0.88115 0.88026 0.95532 0.92739 1.42442 1.30395 1.05890 1.57017 1.19112 1.09505 0.85128 1.23179 0.91215 1.24715 0.97979 0.97944 0.99885 1.69649 1.17174 1.34641 1.36215 0.86337 0.77003 0.85419 0.77814 1.21286 1.21757 1.21297 1.23031 0.93134 1.00259 1.01652 1.22965 0.96411 1.05230 0.98812 1.22780 1.02486 0.93328 1.00722 0.92885 0.92818 0.92676 0.91838 0.91943 0.91673 0.91256 0.88522 0.88029 0.75254 0.91878 0.91776 0.78034 0.93424 0.89155 0.89552 0.90085 0.90222 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.07 5.89 -26.73 -0.16 -1.23 16 3 C -0.09 -0.91 5.50 -26.73 -0.15 -1.05 16 4 C -0.12 -1.42 5.25 -90.61 -0.48 -1.89 16 5 H 0.12 1.55 7.60 -51.93 -0.39 1.16 16 6 C -0.15 -1.68 9.88 -26.73 -0.26 -1.94 16 7 C -0.19 -2.53 5.91 -91.77 -0.54 -3.07 16 8 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 9 C 0.54 9.17 7.61 -10.98 -0.08 9.08 16 10 O -0.56 -11.07 16.26 5.56 0.09 -10.98 16 11 N -0.71 -12.00 5.39 -60.30 -0.32 -12.33 16 12 C 0.12 2.06 5.21 -4.05 -0.02 2.04 16 13 C 0.19 3.60 2.70 -67.93 -0.18 3.41 16 14 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 15 N -0.72 -16.35 4.54 -53.43 -0.24 -16.59 16 16 C -0.24 -6.03 8.63 -15.06 -0.13 -6.16 16 17 H 0.07 1.73 6.93 -52.48 -0.36 1.36 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 20 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 24 C -0.16 -2.79 5.36 -90.62 -0.49 -3.27 16 25 C -0.20 -2.99 10.18 -26.69 -0.27 -3.26 16 26 C -0.16 -2.77 9.79 -26.69 -0.26 -3.04 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 36 H 0.41 7.02 8.14 -40.82 -0.33 6.69 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.39 9.67 7.80 -40.82 -0.32 9.35 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 42 H 0.09 1.26 8.05 -51.93 -0.42 0.85 16 43 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.10 2.08 6.25 -51.93 -0.32 1.76 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -28.90 370.08 -9.96 -38.86 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -8.01 Total: 16.57 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.75 Total: -11.53 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.16 Total: -54.85 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.90 -9.96 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480045220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.907 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds