Wall clock time and date at job start Tue Mar 31 2020 02:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46573 * 2 1 4 4 C 1.50700 * 109.46957 * 119.99508 * 2 1 3 5 5 O 1.21281 * 120.00392 * 0.02562 * 4 2 1 6 6 N 1.34778 * 119.99664 * 180.02562 * 4 2 1 7 7 C 1.46507 * 119.99573 * 179.97438 * 6 4 2 8 8 C 1.53000 * 115.55697 * 180.10863 * 7 6 4 9 9 C 1.53040 * 109.45782 * 159.38161 * 8 7 6 10 10 C 1.53195 * 109.31098 * 178.60962 * 9 8 7 11 11 N 1.46928 * 108.77462 * 54.63711 * 10 9 8 12 12 C 1.36937 * 120.63128 * 126.36652 * 11 10 9 13 13 H 1.08000 * 120.00003 * 207.69766 * 12 11 10 14 14 C 1.38809 * 119.99886 * 27.70151 * 12 11 10 15 15 N 1.31612 * 120.00390 * 17.35074 * 14 12 11 16 16 Si 1.86799 * 119.99707 * 197.34696 * 14 12 11 17 17 H 1.48500 * 109.47068 * 60.00257 * 16 14 12 18 18 H 1.48506 * 109.47022 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47466 * 300.00103 * 16 14 12 20 20 C 1.46931 * 118.73561 * 306.38703 * 11 10 9 21 21 C 1.53038 * 109.46350 * 39.31098 * 8 7 6 22 22 C 1.52993 * 117.49847 * 34.41964 * 7 6 4 23 23 C 1.53000 * 60.03092 * 252.49726 * 22 7 6 24 24 H 1.08999 * 109.47424 * 299.99870 * 1 2 3 25 25 H 1.08993 * 109.47059 * 60.00753 * 1 2 3 26 26 H 1.09003 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47243 * 239.99849 * 2 1 3 28 28 H 1.08991 * 109.47459 * 59.99982 * 3 2 1 29 29 H 1.09000 * 109.46572 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47140 * 299.99667 * 3 2 1 31 31 H 0.96994 * 120.00092 * 0.02562 * 6 4 2 32 32 H 1.09002 * 109.45973 * 279.33497 * 8 7 6 33 33 H 1.08990 * 109.49721 * 298.56202 * 9 8 7 34 34 H 1.08998 * 109.49853 * 58.66315 * 9 8 7 35 35 H 1.08998 * 109.58801 * 294.84914 * 10 9 8 36 36 H 1.09005 * 109.58461 * 174.41716 * 10 9 8 37 37 H 0.96999 * 120.00485 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.58791 * 293.82305 * 20 11 10 39 39 H 1.09004 * 109.58368 * 173.39639 * 20 11 10 40 40 H 1.08997 * 109.49700 * 301.33831 * 21 8 7 41 41 H 1.08994 * 109.49521 * 61.40150 * 21 8 7 42 42 H 1.08994 * 117.50272 * 359.97438 * 22 7 6 43 43 H 1.08999 * 117.49963 * 144.99738 * 22 7 6 44 44 H 1.09001 * 117.49887 * 107.50592 * 23 22 7 45 45 H 1.09008 * 117.49543 * 252.52308 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2442 -1.1716 2.0287 6 7 3.3574 -0.8330 1.4441 7 6 3.8457 -1.5230 2.6406 8 6 5.3671 -1.6014 2.7828 9 6 5.7297 -1.8595 4.2470 10 6 7.2517 -1.9720 4.3798 11 7 7.8665 -0.7655 3.8095 12 6 8.7495 -0.0190 4.5432 13 1 8.8550 1.0381 4.3486 14 6 9.5089 -0.6209 5.5371 15 7 9.6470 -1.9296 5.5582 16 14 10.3350 0.4266 6.8447 17 1 9.3033 1.1884 7.5933 18 1 11.0804 -0.4502 7.7833 19 1 11.2775 1.3742 6.1974 20 6 7.5156 -0.3749 2.4372 21 6 5.9906 -0.2804 2.3263 22 6 3.0259 -2.7069 3.1573 23 6 3.0224 -1.3825 3.9234 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 3.9877 -0.4637 0.8059 32 1 5.7480 -2.4152 2.1657 33 1 5.3709 -1.0341 4.8616 34 1 5.2660 -2.7887 4.5783 35 1 7.6018 -2.8510 3.8388 36 1 7.5214 -2.0567 5.4325 37 1 10.1773 -2.3502 6.2529 38 1 7.8871 -1.1238 1.7379 39 1 7.9593 0.5940 2.2083 40 1 5.7126 -0.0857 1.2905 41 1 5.6288 0.5303 2.9586 42 1 2.1231 -2.9723 2.6073 43 1 3.5704 -3.5419 3.5982 44 1 2.1174 -0.7768 3.8771 45 1 3.5650 -1.3462 4.8681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486486733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:23 Heat of formation + Delta-G solvation = 0.294251 kcal Electronic energy + Delta-G solvation = -23125.994992 eV Core-core repulsion = 19951.485115 eV Total energy + Delta-G solvation = -3174.509877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58595 -38.31158 -36.05132 -34.63264 -32.85760 -32.59617 -30.14766 -29.71916 -27.33704 -25.64788 -24.17881 -22.70380 -22.16234 -21.98648 -20.11599 -19.70447 -18.64709 -17.53768 -16.65193 -15.80647 -15.44290 -14.97808 -14.55148 -13.99508 -13.94059 -13.84496 -13.53702 -13.31546 -13.06213 -12.94186 -12.54581 -12.43425 -12.36631 -12.10112 -11.43621 -11.39589 -11.35234 -11.21461 -11.02199 -10.97060 -10.74174 -10.69856 -10.22630 -10.11816 -10.06328 -9.94144 -9.60176 -9.45969 -9.31468 -8.46489 -8.40277 -6.67548 -5.78811 -3.20772 2.59205 3.12018 3.38496 3.44514 3.45838 4.18739 4.46639 4.50093 4.65242 4.75058 4.94898 5.02422 5.24574 5.29309 5.36455 5.37686 5.45678 5.48538 5.57500 5.60702 5.70061 5.71954 5.79271 5.91616 6.00545 6.02434 6.05305 6.12967 6.27941 6.31292 6.40625 6.58293 6.59746 6.68260 6.72115 6.79678 6.81846 6.97360 7.37482 7.57160 7.66028 7.79290 8.25969 8.45148 9.21524 9.85173 10.41697 11.29676 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031123 B = 0.003969 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.427794 B = 7053.852355 C = 7437.483333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 C -0.145 4.145 4 C 0.513 3.487 5 O -0.537 6.537 6 N -0.691 5.691 7 C 0.102 3.898 8 C -0.041 4.041 9 C -0.133 4.133 10 C 0.171 3.829 11 N -0.591 5.591 12 C -0.253 4.253 13 H 0.064 0.936 14 C 0.003 3.997 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.146 3.854 21 C -0.124 4.124 22 C -0.179 4.179 23 C -0.178 4.178 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.403 0.597 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.017 0.983 36 H 0.088 0.912 37 H 0.254 0.746 38 H 0.017 0.983 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 2.692 -11.101 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.137 4.137 3 C -0.203 4.203 4 C 0.299 3.701 5 O -0.414 6.414 6 N -0.341 5.341 7 C 0.015 3.985 8 C -0.060 4.060 9 C -0.173 4.173 10 C 0.045 3.955 11 N -0.314 5.314 12 C -0.383 4.383 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.547 5.547 16 Si 0.731 3.269 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.209 1.209 20 C 0.019 3.981 21 C -0.164 4.164 22 C -0.217 4.217 23 C -0.216 4.216 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.239 0.761 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.035 0.965 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.119 0.881 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.855 2.274 -10.428 18.291 hybrid contribution 0.749 0.617 0.317 1.021 sum -14.106 2.891 -10.111 17.595 Atomic orbital electron populations 1.21589 0.92558 1.02717 1.01966 1.21325 0.98330 0.97346 0.96740 1.21796 1.01403 0.94168 1.02887 1.20689 0.82149 0.79603 0.87637 1.90651 1.55663 1.48450 1.46680 1.45468 1.06757 1.57521 1.24350 1.21008 0.92974 0.98954 0.85561 1.20661 0.87784 0.98515 0.99039 1.22342 1.00993 1.00275 0.93662 1.20794 0.86122 0.87901 1.00654 1.44037 1.49250 1.28919 1.09217 1.19141 1.14753 0.90773 1.13639 0.91783 1.25018 0.97735 0.95605 1.01232 1.70017 1.42144 1.08303 1.34258 0.86384 0.79119 0.79525 0.81833 1.21035 1.21635 1.20910 1.20887 0.91225 0.98070 0.87904 1.22023 0.99061 0.96792 0.98505 1.23353 1.02287 0.92149 1.03908 1.23505 1.02174 1.00425 0.95469 0.91953 0.92219 0.92043 0.88718 0.91980 0.92001 0.91472 0.76070 0.91138 0.92056 0.92977 0.96468 0.89336 0.93579 0.96536 0.92812 0.93807 0.91980 0.88001 0.88941 0.88099 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.48 37.16 0.32 -0.85 16 2 C -0.12 -1.05 3.26 -91.77 -0.30 -1.34 16 3 C -0.14 -1.12 9.09 37.16 0.34 -0.78 16 4 C 0.51 6.51 6.86 -10.99 -0.08 6.43 16 5 O -0.54 -8.50 11.46 5.56 0.06 -8.44 16 6 N -0.69 -8.66 5.28 -47.57 -0.25 -8.91 16 7 C 0.10 1.51 2.99 -131.78 -0.39 1.12 16 8 C -0.04 -0.66 2.45 -90.58 -0.22 -0.88 16 9 C -0.13 -2.48 4.00 -26.61 -0.11 -2.59 16 10 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 11 N -0.59 -14.52 2.99 -172.31 -0.52 -15.03 16 12 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 13 H 0.06 1.71 7.89 -52.49 -0.41 1.29 16 14 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 15 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 16 Si 0.90 21.58 29.59 -169.99 -5.03 16.56 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.15 2.93 6.52 -3.71 -0.02 2.91 16 21 C -0.12 -2.02 5.02 -26.61 -0.13 -2.16 16 22 C -0.18 -2.69 9.05 -26.73 -0.24 -2.93 16 23 C -0.18 -2.78 8.84 -26.70 -0.24 -3.01 16 24 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.40 4.24 6.23 -40.82 -0.25 3.98 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.19 6.84 -51.93 -0.36 0.84 16 34 H 0.05 0.89 6.87 -51.93 -0.36 0.54 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 40 H 0.04 0.57 6.41 -51.93 -0.33 0.24 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.10 1.62 6.38 -51.93 -0.33 1.29 16 43 H 0.09 1.34 7.28 -51.93 -0.38 0.96 16 44 H 0.10 1.68 6.37 -51.93 -0.33 1.35 16 45 H 0.10 1.59 5.91 -51.92 -0.31 1.28 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -30.30 339.54 -8.86 -39.16 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.54 Total: 4.10 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.33 Total: -7.16 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.15 Total: -49.34 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.06 Total: -8.44 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.30 -8.86 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486486733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.455 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds