Wall clock time and date at job start Tue Mar 31 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46573 * 2 1 4 4 C 1.50700 * 109.46957 * 119.99508 * 2 1 3 5 5 O 1.21281 * 120.00392 * 0.02562 * 4 2 1 6 6 N 1.34778 * 119.99664 * 180.02562 * 4 2 1 7 7 C 1.46507 * 119.99573 * 179.97438 * 6 4 2 8 8 C 1.53000 * 115.55697 * 180.10863 * 7 6 4 9 9 C 1.53040 * 109.45782 * 159.38161 * 8 7 6 10 10 C 1.53195 * 109.31098 * 178.60962 * 9 8 7 11 11 N 1.46928 * 108.77462 * 54.63711 * 10 9 8 12 12 C 1.36937 * 120.63128 * 126.36652 * 11 10 9 13 13 H 1.08000 * 120.00003 * 207.69766 * 12 11 10 14 14 C 1.38809 * 119.99886 * 27.70151 * 12 11 10 15 15 N 1.31612 * 120.00390 * 17.35074 * 14 12 11 16 16 Si 1.86799 * 119.99707 * 197.34696 * 14 12 11 17 17 H 1.48500 * 109.47068 * 60.00257 * 16 14 12 18 18 H 1.48506 * 109.47022 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47466 * 300.00103 * 16 14 12 20 20 C 1.46931 * 118.73561 * 306.38703 * 11 10 9 21 21 C 1.53038 * 109.46350 * 39.31098 * 8 7 6 22 22 C 1.52993 * 117.49847 * 34.41964 * 7 6 4 23 23 C 1.53000 * 60.03092 * 252.49726 * 22 7 6 24 24 H 1.08999 * 109.47424 * 299.99870 * 1 2 3 25 25 H 1.08993 * 109.47059 * 60.00753 * 1 2 3 26 26 H 1.09003 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47243 * 239.99849 * 2 1 3 28 28 H 1.08991 * 109.47459 * 59.99982 * 3 2 1 29 29 H 1.09000 * 109.46572 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47140 * 299.99667 * 3 2 1 31 31 H 0.96994 * 120.00092 * 0.02562 * 6 4 2 32 32 H 1.09002 * 109.45973 * 279.33497 * 8 7 6 33 33 H 1.08990 * 109.49721 * 298.56202 * 9 8 7 34 34 H 1.08998 * 109.49853 * 58.66315 * 9 8 7 35 35 H 1.08998 * 109.58801 * 294.84914 * 10 9 8 36 36 H 1.09005 * 109.58461 * 174.41716 * 10 9 8 37 37 H 0.96999 * 120.00485 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.58791 * 293.82305 * 20 11 10 39 39 H 1.09004 * 109.58368 * 173.39639 * 20 11 10 40 40 H 1.08997 * 109.49700 * 301.33831 * 21 8 7 41 41 H 1.08994 * 109.49521 * 61.40150 * 21 8 7 42 42 H 1.08994 * 117.50272 * 359.97438 * 22 7 6 43 43 H 1.08999 * 117.49963 * 144.99738 * 22 7 6 44 44 H 1.09001 * 117.49887 * 107.50592 * 23 22 7 45 45 H 1.09008 * 117.49543 * 252.52308 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2442 -1.1716 2.0287 6 7 3.3574 -0.8330 1.4441 7 6 3.8457 -1.5230 2.6406 8 6 5.3671 -1.6014 2.7828 9 6 5.7297 -1.8595 4.2470 10 6 7.2517 -1.9720 4.3798 11 7 7.8665 -0.7655 3.8095 12 6 8.7495 -0.0190 4.5432 13 1 8.8550 1.0381 4.3486 14 6 9.5089 -0.6209 5.5371 15 7 9.6470 -1.9296 5.5582 16 14 10.3350 0.4266 6.8447 17 1 9.3033 1.1884 7.5933 18 1 11.0804 -0.4502 7.7833 19 1 11.2775 1.3742 6.1974 20 6 7.5156 -0.3749 2.4372 21 6 5.9906 -0.2804 2.3263 22 6 3.0259 -2.7069 3.1573 23 6 3.0224 -1.3825 3.9234 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 3.9877 -0.4637 0.8059 32 1 5.7480 -2.4152 2.1657 33 1 5.3709 -1.0341 4.8616 34 1 5.2660 -2.7887 4.5783 35 1 7.6018 -2.8510 3.8388 36 1 7.5214 -2.0567 5.4325 37 1 10.1773 -2.3502 6.2529 38 1 7.8871 -1.1238 1.7379 39 1 7.9593 0.5940 2.2083 40 1 5.7126 -0.0857 1.2905 41 1 5.6288 0.5303 2.9586 42 1 2.1231 -2.9723 2.6073 43 1 3.5704 -3.5419 3.5982 44 1 2.1174 -0.7768 3.8771 45 1 3.5650 -1.3462 4.8681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486486733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:22 Heat of formation + Delta-G solvation = -17.361733 kcal Electronic energy + Delta-G solvation = -23126.760612 eV Core-core repulsion = 19951.485115 eV Total energy + Delta-G solvation = -3175.275498 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69817 -39.64208 -37.53920 -35.51074 -34.53588 -33.78090 -31.91005 -31.36480 -27.98597 -27.40288 -25.37196 -24.14295 -23.64658 -23.34618 -21.48851 -20.77841 -20.07612 -18.70424 -18.38060 -17.03795 -16.68282 -16.34416 -15.86771 -15.48714 -15.32212 -15.18703 -14.78031 -14.76258 -14.44833 -14.14711 -14.00782 -13.66545 -13.13933 -13.05497 -12.94894 -12.83166 -12.55946 -12.49569 -12.42262 -12.36263 -12.04669 -11.96127 -11.92939 -11.77547 -11.66733 -11.43676 -11.17712 -10.90224 -10.53953 -10.44674 -9.55306 -8.66304 -7.86085 -5.30357 1.47020 1.49832 1.56073 1.61648 2.11609 2.52412 2.96823 3.28313 3.58205 3.63972 3.75018 3.85393 4.01120 4.02069 4.08349 4.25482 4.26668 4.43909 4.52571 4.58975 4.69671 4.73505 4.78018 4.83630 4.89191 4.91376 4.95080 5.02500 5.06311 5.10637 5.14571 5.24020 5.28172 5.32934 5.34130 5.35444 5.42259 5.54833 5.63060 5.67575 5.79031 6.40822 6.60718 7.16866 7.29637 7.89310 8.40017 9.20025 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031123 B = 0.003969 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.427794 B = 7053.852355 C = 7437.483333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.507 3.493 5 O -0.572 6.572 6 N -0.685 5.685 7 C 0.113 3.887 8 C -0.033 4.033 9 C -0.119 4.119 10 C 0.178 3.822 11 N -0.611 5.611 12 C -0.263 4.263 13 H 0.066 0.934 14 C -0.050 4.050 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.280 1.280 18 H -0.295 1.295 19 H -0.274 1.274 20 C 0.140 3.860 21 C -0.111 4.111 22 C -0.174 4.174 23 C -0.183 4.183 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.120 0.880 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.415 0.585 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.065 0.935 35 H -0.003 1.003 36 H 0.052 0.948 37 H 0.249 0.751 38 H 0.018 0.982 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.268 3.930 -13.075 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.130 4.130 3 C -0.200 4.200 4 C 0.296 3.704 5 O -0.452 6.452 6 N -0.336 5.336 7 C 0.025 3.975 8 C -0.052 4.052 9 C -0.158 4.158 10 C 0.052 3.948 11 N -0.334 5.334 12 C -0.393 4.393 13 H 0.084 0.916 14 C -0.246 4.246 15 N -0.581 5.581 16 Si 0.792 3.208 17 H -0.206 1.206 18 H -0.221 1.221 19 H -0.200 1.200 20 C 0.015 3.985 21 C -0.150 4.150 22 C -0.212 4.212 23 C -0.222 4.222 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.138 0.862 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.254 0.746 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.016 0.984 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.074 0.926 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.108 0.892 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.711 3.542 -12.446 20.354 hybrid contribution 0.992 0.227 0.887 1.350 sum -14.719 3.768 -11.560 19.091 Atomic orbital electron populations 1.21595 0.92649 1.02067 1.02414 1.21376 0.98164 0.97967 0.95471 1.21810 1.01883 0.93036 1.03306 1.21436 0.81658 0.79001 0.88341 1.90643 1.56446 1.49896 1.48170 1.45391 1.07234 1.57254 1.23682 1.20712 0.91731 0.98864 0.86176 1.20506 0.88861 0.98741 0.97069 1.22108 0.97298 1.00699 0.95705 1.20576 0.89065 0.87076 0.98068 1.44313 1.49196 1.28847 1.11077 1.19488 1.14625 0.91241 1.13979 0.91602 1.25746 0.98949 0.96627 1.03233 1.70168 1.43285 1.09800 1.34807 0.85399 0.78185 0.77973 0.79252 1.20649 1.22123 1.20012 1.21077 0.93915 0.97984 0.85546 1.21867 0.95855 0.96307 1.00954 1.23309 1.02080 0.92147 1.03666 1.23410 1.01977 1.00980 0.95798 0.93647 0.89605 0.93267 0.86205 0.93405 0.91231 0.89264 0.74627 0.90744 0.92867 0.91658 0.98443 0.92974 0.94166 0.96410 0.92594 0.89567 0.92858 0.88695 0.88382 0.89198 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.48 71.98 0.61 -1.42 16 2 C -0.11 -1.63 3.26 -11.54 -0.04 -1.67 16 3 C -0.14 -1.71 9.09 71.98 0.65 -1.06 16 4 C 0.51 11.82 6.86 87.66 0.60 12.42 16 5 O -0.57 -17.62 11.46 -3.03 -0.03 -17.65 16 6 N -0.68 -15.27 5.28 -422.82 -2.23 -17.50 16 7 C 0.11 3.13 2.99 3.62 0.01 3.14 16 8 C -0.03 -1.00 2.45 -10.77 -0.03 -1.02 16 9 C -0.12 -4.38 4.00 30.67 0.12 -4.26 16 10 C 0.18 8.48 5.31 86.36 0.46 8.94 16 11 N -0.61 -30.08 2.99 -699.07 -2.09 -32.17 16 12 C -0.26 -14.38 9.58 84.03 0.81 -13.57 16 13 H 0.07 3.50 7.89 -2.91 -0.02 3.47 16 14 C -0.05 -2.80 4.91 84.86 0.42 -2.38 16 15 N -0.93 -55.28 11.19 21.65 0.24 -55.04 16 16 Si 0.96 44.87 29.59 68.60 2.03 46.90 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 C 0.14 5.44 6.52 86.36 0.56 6.00 16 21 C -0.11 -3.32 5.02 30.67 0.15 -3.16 16 22 C -0.17 -5.03 9.05 30.59 0.28 -4.75 16 23 C -0.18 -5.60 8.84 30.62 0.27 -5.33 16 24 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 27 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.73 7.56 -2.39 -0.02 0.72 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.42 7.07 6.23 -92.71 -0.58 6.49 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 33 H 0.05 2.05 6.84 -2.39 -0.02 2.04 16 34 H 0.06 2.21 6.87 -2.39 -0.02 2.20 16 35 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.05 2.85 6.04 -2.38 -0.01 2.84 16 37 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 38 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 2.12 7.93 -2.38 -0.02 2.10 16 40 H 0.09 1.88 6.41 -2.39 -0.02 1.86 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 2.93 6.38 -2.39 -0.02 2.92 16 43 H 0.10 2.71 7.28 -2.39 -0.02 2.69 16 44 H 0.09 2.98 6.37 -2.39 -0.02 2.96 16 45 H 0.10 2.99 5.91 -2.38 -0.01 2.98 16 Total: -1.00 -66.98 339.54 3.19 -63.79 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.39 Total: 19.79 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.88 Total: -8.11 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.08 Total: -104.71 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.03 Total: -17.65 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.98 3.19 -63.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486486733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.429 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds