Wall clock time and date at job start Tue Mar 31 2020 02:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99709 * 2 1 4 4 C 1.50696 * 120.00035 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.47025 * 94.99923 * 4 2 1 6 6 C 1.50702 * 109.46987 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99722 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99976 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99942 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.64144 * 328.14502 * 9 8 6 11 11 C 1.55155 * 110.87336 * 91.38979 * 9 8 6 12 12 C 1.54692 * 101.67546 * 153.77007 * 11 9 8 13 13 N 1.47429 * 104.94310 * 323.27607 * 12 11 9 14 14 C 1.36933 * 125.64725 * 204.07383 * 13 12 11 15 15 H 1.08003 * 119.99599 * 149.37303 * 14 13 12 16 16 C 1.38811 * 120.00456 * 329.37625 * 14 13 12 17 17 N 1.31616 * 120.00211 * 172.01076 * 16 14 13 18 18 Si 1.86802 * 119.99484 * 352.00610 * 16 14 13 19 19 H 1.48508 * 109.46778 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47065 * 60.00510 * 18 16 14 21 21 H 1.48494 * 109.47353 * 299.99899 * 18 16 14 22 22 C 1.47023 * 108.69760 * 23.81150 * 13 12 11 23 23 H 1.09007 * 109.88067 * 239.59052 * 22 13 12 24 24 C 1.52998 * 109.88228 * 118.58813 * 22 13 12 25 25 C 1.52996 * 109.47401 * 65.82083 * 24 22 13 26 26 H 1.08002 * 120.00151 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99988 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46794 * 239.99709 * 3 2 1 29 29 H 1.09003 * 109.47189 * 359.97438 * 3 2 1 30 30 H 1.08993 * 109.46969 * 120.00149 * 3 2 1 31 31 H 1.09002 * 109.47169 * 335.00146 * 4 2 1 32 32 H 1.08997 * 109.47054 * 214.99970 * 4 2 1 33 33 H 1.09002 * 109.46965 * 60.00098 * 5 4 2 34 34 H 1.08997 * 109.47243 * 299.99931 * 5 4 2 35 35 H 0.97001 * 119.99882 * 0.02562 * 8 6 5 36 36 H 1.09001 * 111.00448 * 272.01153 * 11 9 8 37 37 H 1.09001 * 111.00484 * 35.82461 * 11 9 8 38 38 H 1.09007 * 110.39037 * 204.36567 * 12 11 9 39 39 H 1.08994 * 110.24190 * 82.11623 * 12 11 9 40 40 H 0.97001 * 119.99644 * 355.27445 * 17 16 14 41 41 H 1.08997 * 109.47274 * 185.82496 * 24 22 13 42 42 H 1.09010 * 109.46603 * 305.82546 * 24 22 13 43 43 H 1.09000 * 109.47839 * 292.89935 * 25 24 22 44 44 H 1.09005 * 109.46749 * 52.89883 * 25 24 22 45 45 H 1.08996 * 109.47374 * 172.89806 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 6 3.1815 -2.9893 -1.4356 7 8 3.4053 -3.5598 -0.3890 8 7 3.6062 -3.5228 -2.5982 9 6 4.3387 -4.7914 -2.5976 10 1 4.9302 -4.8932 -1.6877 11 6 3.3674 -5.9907 -2.7578 12 6 4.2874 -7.0548 -3.4015 13 7 5.1657 -6.2975 -4.3118 14 6 5.8050 -6.8062 -5.4107 15 1 6.0014 -6.1723 -6.2627 16 6 6.2005 -8.1366 -5.4296 17 7 6.6711 -8.6676 -6.5382 18 14 6.0651 -9.1733 -3.8816 19 1 6.5491 -10.5488 -4.1631 20 1 4.6469 -9.2269 -3.4443 21 1 6.8921 -8.5684 -2.8068 22 6 5.2363 -4.9042 -3.8478 23 1 4.8746 -4.2348 -4.6284 24 6 6.6798 -4.5489 -3.4858 25 6 7.5435 -4.5755 -4.7484 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 2.6902 1.3628 -0.8900 29 1 1.3551 2.1336 -0.0005 30 1 2.6901 1.3629 0.8899 31 1 1.4386 -2.0852 0.4352 32 1 2.9742 -1.1985 0.5900 33 1 3.0523 -0.9043 -1.8709 34 1 1.5167 -1.7910 -2.0257 35 1 3.4267 -3.0667 -3.4353 36 1 2.9975 -6.3261 -1.7889 37 1 2.5415 -5.7384 -3.4230 38 1 3.6960 -7.7798 -3.9609 39 1 4.8777 -7.5564 -2.6348 40 1 6.6777 -8.1505 -7.3588 41 1 6.7093 -3.5519 -3.0463 42 1 7.0633 -5.2740 -2.7679 43 1 7.6167 -5.5986 -5.1172 44 1 7.0890 -3.9453 -5.5129 45 1 8.5403 -4.2014 -4.5146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489116014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:13 Heat of formation + Delta-G solvation = -13.500997 kcal Electronic energy + Delta-G solvation = -22500.684018 eV Core-core repulsion = 19325.575934 eV Total energy + Delta-G solvation = -3175.108084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.92288 -38.15453 -36.56920 -34.19358 -32.53086 -32.31590 -31.36695 -29.15925 -27.56511 -27.17559 -24.96732 -23.59534 -22.07192 -20.98552 -20.31685 -19.21833 -18.65699 -17.49696 -16.90478 -16.20462 -15.80129 -15.10255 -14.77531 -14.61882 -14.24057 -13.82097 -13.47979 -13.37829 -13.25299 -13.14392 -12.70611 -12.44377 -12.29261 -12.08448 -11.96352 -11.71434 -11.47731 -11.27553 -11.26690 -11.10165 -10.83055 -10.51802 -10.32558 -10.12141 -10.00065 -9.82556 -9.41885 -9.26861 -9.05531 -8.80651 -8.50552 -6.97834 -6.32336 -3.38942 1.93855 2.71207 3.28467 3.44233 3.53026 3.71011 4.49666 4.60587 4.63603 4.81964 4.91407 4.99876 5.09795 5.19233 5.24932 5.27413 5.32013 5.36619 5.46234 5.60042 5.62029 5.66358 5.74501 5.79368 5.90872 5.95070 5.97007 6.09422 6.17491 6.33069 6.36828 6.43098 6.53659 6.61404 6.61822 6.63176 6.75138 6.76839 7.03408 7.34636 7.62508 7.86240 8.31901 8.34693 8.99288 9.50150 10.24585 11.13444 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031881 B = 0.003670 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.059351 B = 7627.542508 C = 8046.995755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.070 4.070 5 C -0.134 4.134 6 C 0.511 3.489 7 O -0.544 6.544 8 N -0.717 5.717 9 C 0.132 3.868 10 H 0.096 0.904 11 C -0.142 4.142 12 C 0.114 3.886 13 N -0.601 5.601 14 C -0.313 4.313 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.925 5.925 18 Si 1.056 2.944 19 H -0.300 1.300 20 H -0.279 1.279 21 H -0.291 1.291 22 C 0.157 3.843 23 H 0.040 0.960 24 C -0.122 4.122 25 C -0.151 4.151 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.399 0.601 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.040 0.960 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.037 0.963 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 17.015 10.031 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.125 4.125 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.297 3.703 7 O -0.422 6.422 8 N -0.368 5.368 9 C 0.027 3.973 10 H 0.114 0.886 11 C -0.181 4.181 12 C -0.011 4.011 13 N -0.328 5.328 14 C -0.440 4.440 15 H 0.090 0.910 16 C -0.211 4.211 17 N -0.565 5.565 18 Si 0.888 3.112 19 H -0.228 1.228 20 H -0.206 1.206 21 H -0.219 1.219 22 C 0.049 3.951 23 H 0.057 0.943 24 C -0.162 4.162 25 C -0.208 4.208 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.233 0.767 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.056 0.944 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.147 15.064 11.308 20.940 hybrid contribution -0.411 1.813 -1.107 2.164 sum -9.558 16.878 10.201 21.915 Atomic orbital electron populations 1.23748 0.95202 1.01844 1.02614 1.21805 0.95466 0.95764 0.99494 1.20893 1.00266 0.94268 1.02317 1.20392 1.00912 0.94114 0.95407 1.21631 1.01201 0.95320 0.99262 1.20666 0.79226 0.86670 0.83744 1.90696 1.56952 1.63077 1.31436 1.46069 1.57412 1.24341 1.08933 1.22112 0.93032 0.82102 1.00051 0.88579 1.23118 0.98129 0.96320 1.00555 1.22178 0.91587 0.94352 0.92999 1.44731 1.53575 1.04755 1.29738 1.19951 1.35295 0.96593 0.92188 0.91047 1.26201 0.95492 0.95598 1.03821 1.70908 1.46004 1.39537 1.00053 0.84042 0.76541 0.75580 0.75055 1.22758 1.20612 1.21864 1.21208 0.92659 0.89280 0.91928 0.94268 1.21864 0.97039 0.98897 0.98358 1.21908 0.96887 1.04899 0.97092 0.88569 0.88448 0.91508 0.92106 0.91510 0.90512 0.90457 0.88940 0.88934 0.76664 0.91372 0.91261 0.91961 0.95720 0.92729 0.94098 0.92460 0.88739 0.94404 0.95123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 13.90 29.01 0.40 -1.13 16 2 C -0.13 -1.03 5.31 -101.07 -0.54 -1.57 16 3 C -0.12 -0.82 10.12 36.01 0.36 -0.46 16 4 C -0.07 -0.69 4.67 -27.88 -0.13 -0.82 16 5 C -0.13 -1.25 5.68 -27.88 -0.16 -1.40 16 6 C 0.51 6.82 7.83 -10.98 -0.09 6.74 16 7 O -0.54 -9.40 15.63 5.56 0.09 -9.32 16 8 N -0.72 -9.55 5.18 -52.03 -0.27 -9.82 16 9 C 0.13 2.22 2.84 -66.10 -0.19 2.04 16 10 H 0.10 1.77 7.26 -51.93 -0.38 1.39 16 11 C -0.14 -2.48 6.76 -24.70 -0.17 -2.65 16 12 C 0.11 2.42 4.44 -2.64 -0.01 2.41 16 13 N -0.60 -13.84 2.85 -162.71 -0.46 -14.30 16 14 C -0.31 -8.35 7.56 -15.06 -0.11 -8.46 16 15 H 0.07 2.03 7.59 -52.48 -0.40 1.64 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -28.13 13.70 55.49 0.76 -27.37 16 18 Si 1.06 26.12 25.03 -169.99 -4.26 21.86 16 19 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 20 H -0.28 -6.30 5.19 56.52 0.29 -6.00 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C 0.16 2.98 3.00 -66.96 -0.20 2.78 16 23 H 0.04 0.74 7.72 -51.93 -0.40 0.34 16 24 C -0.12 -2.29 5.46 -26.73 -0.15 -2.43 16 25 C -0.15 -2.95 9.10 37.16 0.34 -2.61 16 26 H 0.10 0.64 7.83 -52.49 -0.41 0.23 16 27 H 0.10 0.75 7.99 -52.49 -0.42 0.33 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.36 7.78 -51.93 -0.40 -0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.83 7.94 -51.93 -0.41 0.42 16 32 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 4.34 8.37 -40.82 -0.34 4.00 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.38 6.77 -51.93 -0.35 1.03 16 39 H 0.03 0.55 5.37 -51.93 -0.28 0.27 16 40 H 0.26 7.89 8.73 -40.82 -0.36 7.53 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 43 H 0.09 2.21 5.49 -51.93 -0.29 1.93 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 352.35 15.07 5.31 5.31 Total: -1.00 -31.12 352.35 -7.55 -38.66 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.99 Total: 2.92 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.73 Total: -7.94 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.03 Total: -51.50 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: -4.26 Total: 21.86 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.12 -7.55 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489116014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.162 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds