Wall clock time and date at job start Tue Mar 31 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 119.99709 * 2 1 4 4 C 1.50696 * 120.00035 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.47025 * 94.99923 * 4 2 1 6 6 C 1.50702 * 109.46987 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99722 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99976 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99942 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.64144 * 328.14502 * 9 8 6 11 11 C 1.55155 * 110.87336 * 91.38979 * 9 8 6 12 12 C 1.54692 * 101.67546 * 153.77007 * 11 9 8 13 13 N 1.47429 * 104.94310 * 323.27607 * 12 11 9 14 14 C 1.36933 * 125.64725 * 204.07383 * 13 12 11 15 15 H 1.08003 * 119.99599 * 149.37303 * 14 13 12 16 16 C 1.38811 * 120.00456 * 329.37625 * 14 13 12 17 17 N 1.31616 * 120.00211 * 172.01076 * 16 14 13 18 18 Si 1.86802 * 119.99484 * 352.00610 * 16 14 13 19 19 H 1.48508 * 109.46778 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47065 * 60.00510 * 18 16 14 21 21 H 1.48494 * 109.47353 * 299.99899 * 18 16 14 22 22 C 1.47023 * 108.69760 * 23.81150 * 13 12 11 23 23 H 1.09007 * 109.88067 * 239.59052 * 22 13 12 24 24 C 1.52998 * 109.88228 * 118.58813 * 22 13 12 25 25 C 1.52996 * 109.47401 * 65.82083 * 24 22 13 26 26 H 1.08002 * 120.00151 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99988 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46794 * 239.99709 * 3 2 1 29 29 H 1.09003 * 109.47189 * 359.97438 * 3 2 1 30 30 H 1.08993 * 109.46969 * 120.00149 * 3 2 1 31 31 H 1.09002 * 109.47169 * 335.00146 * 4 2 1 32 32 H 1.08997 * 109.47054 * 214.99970 * 4 2 1 33 33 H 1.09002 * 109.46965 * 60.00098 * 5 4 2 34 34 H 1.08997 * 109.47243 * 299.99931 * 5 4 2 35 35 H 0.97001 * 119.99882 * 0.02562 * 8 6 5 36 36 H 1.09001 * 111.00448 * 272.01153 * 11 9 8 37 37 H 1.09001 * 111.00484 * 35.82461 * 11 9 8 38 38 H 1.09007 * 110.39037 * 204.36567 * 12 11 9 39 39 H 1.08994 * 110.24190 * 82.11623 * 12 11 9 40 40 H 0.97001 * 119.99644 * 355.27445 * 17 16 14 41 41 H 1.08997 * 109.47274 * 185.82496 * 24 22 13 42 42 H 1.09010 * 109.46603 * 305.82546 * 24 22 13 43 43 H 1.09000 * 109.47839 * 292.89935 * 25 24 22 44 44 H 1.09005 * 109.46749 * 52.89883 * 25 24 22 45 45 H 1.08996 * 109.47374 * 172.89806 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 6 3.1815 -2.9893 -1.4356 7 8 3.4053 -3.5598 -0.3890 8 7 3.6062 -3.5228 -2.5982 9 6 4.3387 -4.7914 -2.5976 10 1 4.9302 -4.8932 -1.6877 11 6 3.3674 -5.9907 -2.7578 12 6 4.2874 -7.0548 -3.4015 13 7 5.1657 -6.2975 -4.3118 14 6 5.8050 -6.8062 -5.4107 15 1 6.0014 -6.1723 -6.2627 16 6 6.2005 -8.1366 -5.4296 17 7 6.6711 -8.6676 -6.5382 18 14 6.0651 -9.1733 -3.8816 19 1 6.5491 -10.5488 -4.1631 20 1 4.6469 -9.2269 -3.4443 21 1 6.8921 -8.5684 -2.8068 22 6 5.2363 -4.9042 -3.8478 23 1 4.8746 -4.2348 -4.6284 24 6 6.6798 -4.5489 -3.4858 25 6 7.5435 -4.5755 -4.7484 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 2.6902 1.3628 -0.8900 29 1 1.3551 2.1336 -0.0005 30 1 2.6901 1.3629 0.8899 31 1 1.4386 -2.0852 0.4352 32 1 2.9742 -1.1985 0.5900 33 1 3.0523 -0.9043 -1.8709 34 1 1.5167 -1.7910 -2.0257 35 1 3.4267 -3.0667 -3.4353 36 1 2.9975 -6.3261 -1.7889 37 1 2.5415 -5.7384 -3.4230 38 1 3.6960 -7.7798 -3.9609 39 1 4.8777 -7.5564 -2.6348 40 1 6.6777 -8.1505 -7.3588 41 1 6.7093 -3.5519 -3.0463 42 1 7.0633 -5.2740 -2.7679 43 1 7.6167 -5.5986 -5.1172 44 1 7.0890 -3.9453 -5.5129 45 1 8.5403 -4.2014 -4.5146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489116014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:12 Heat of formation + Delta-G solvation = -33.503055 kcal Electronic energy + Delta-G solvation = -22501.551372 eV Core-core repulsion = 19325.575934 eV Total energy + Delta-G solvation = -3175.975438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12964 -39.59974 -37.28478 -35.66248 -34.24442 -33.99721 -32.29530 -30.79101 -28.73178 -28.05943 -26.26280 -24.99072 -23.83726 -22.34506 -21.56802 -20.76731 -19.51197 -19.29205 -17.95206 -17.61202 -16.72736 -16.67394 -16.04105 -15.57098 -15.44209 -15.24183 -14.97971 -14.78713 -14.60959 -14.10687 -14.03805 -13.72245 -13.48021 -13.39522 -13.17107 -13.02049 -12.94669 -12.49774 -12.48022 -12.21134 -11.94272 -11.86032 -11.80183 -11.79685 -11.58194 -11.35934 -11.16628 -10.85331 -10.57482 -9.99131 -9.89797 -8.96645 -8.51444 -5.52988 1.33823 1.45402 1.52312 1.67576 1.71596 2.19567 2.57504 3.19196 3.30462 3.67502 3.74840 3.78377 4.00783 4.07900 4.12550 4.22971 4.29352 4.37706 4.38997 4.48234 4.55847 4.63926 4.70403 4.75345 4.87047 4.89660 4.92742 4.98875 4.99049 5.03220 5.10767 5.14893 5.16490 5.18826 5.22933 5.34861 5.58529 5.64323 5.78408 5.80297 6.02451 6.24073 6.59614 6.87223 7.29253 7.47308 8.19329 8.94056 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031881 B = 0.003670 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.059351 B = 7627.542508 C = 8046.995755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 C -0.121 4.121 4 C -0.069 4.069 5 C -0.123 4.123 6 C 0.511 3.489 7 O -0.585 6.585 8 N -0.707 5.707 9 C 0.146 3.854 10 H 0.084 0.916 11 C -0.129 4.129 12 C 0.105 3.895 13 N -0.618 5.618 14 C -0.280 4.280 15 H 0.046 0.954 16 C -0.066 4.066 17 N -0.967 5.967 18 Si 1.086 2.914 19 H -0.314 1.314 20 H -0.245 1.245 21 H -0.287 1.287 22 C 0.155 3.845 23 H 0.050 0.950 24 C -0.119 4.119 25 C -0.145 4.145 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.414 0.586 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.022 0.978 40 H 0.249 0.751 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.359 19.615 11.411 25.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.132 4.132 3 C -0.178 4.178 4 C -0.107 4.107 5 C -0.163 4.163 6 C 0.300 3.700 7 O -0.465 6.465 8 N -0.359 5.359 9 C 0.040 3.960 10 H 0.102 0.898 11 C -0.168 4.168 12 C -0.019 4.019 13 N -0.345 5.345 14 C -0.409 4.409 15 H 0.064 0.936 16 C -0.260 4.260 17 N -0.611 5.611 18 Si 0.914 3.086 19 H -0.243 1.243 20 H -0.170 1.170 21 H -0.214 1.214 22 C 0.049 3.951 23 H 0.068 0.932 24 C -0.158 4.158 25 C -0.202 4.202 26 H 0.127 0.873 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.251 0.749 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.851 17.726 12.696 24.355 hybrid contribution 0.086 1.142 -1.526 1.908 sum -10.765 18.868 11.170 24.427 Atomic orbital electron populations 1.23891 0.95169 1.02442 1.01801 1.21805 0.95620 0.95576 1.00246 1.20920 1.00477 0.93744 1.02635 1.20329 1.00246 0.94594 0.95496 1.21640 1.01839 0.93355 0.99436 1.21361 0.78488 0.87441 0.82750 1.90690 1.58495 1.64418 1.32899 1.45908 1.56877 1.23130 1.09985 1.21715 0.92588 0.83659 0.98060 0.89820 1.23021 0.97701 0.95119 1.00990 1.22231 0.91855 0.95346 0.92509 1.44811 1.53862 1.06656 1.29209 1.19734 1.33001 0.95797 0.92378 0.93595 1.27130 0.96279 0.97414 1.05144 1.70994 1.49670 1.40000 1.00414 0.83690 0.78467 0.73632 0.72807 1.24303 1.16996 1.21440 1.21329 0.93625 0.86968 0.93221 0.93229 1.21825 0.96307 1.00193 0.97493 1.21776 0.98573 1.02158 0.97674 0.87281 0.88638 0.90771 0.91148 0.91630 0.92087 0.91734 0.86467 0.86837 0.74858 0.90171 0.89939 0.93080 0.96076 0.94131 0.90903 0.94106 0.93236 0.93713 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.54 13.90 67.77 0.94 -1.60 16 2 C -0.13 -1.84 5.31 -16.49 -0.09 -1.93 16 3 C -0.12 -1.31 10.12 71.24 0.72 -0.59 16 4 C -0.07 -1.19 4.67 29.85 0.14 -1.05 16 5 C -0.12 -1.85 5.68 29.85 0.17 -1.68 16 6 C 0.51 12.12 7.83 87.66 0.69 12.81 16 7 O -0.59 -19.09 15.63 -3.04 -0.05 -19.14 16 8 N -0.71 -16.36 5.18 -436.93 -2.26 -18.63 16 9 C 0.15 4.52 2.84 46.18 0.13 4.66 16 10 H 0.08 2.88 7.26 -2.39 -0.02 2.87 16 11 C -0.13 -4.16 6.76 31.91 0.22 -3.94 16 12 C 0.11 4.31 4.44 86.78 0.39 4.69 16 13 N -0.62 -27.96 2.85 -668.68 -1.90 -29.86 16 14 C -0.28 -15.18 7.56 84.03 0.64 -14.55 16 15 H 0.05 2.70 7.59 -2.91 -0.02 2.68 16 16 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 17 N -0.97 -61.06 13.70 21.65 0.30 -60.76 16 18 Si 1.09 53.31 25.03 68.60 1.72 55.02 16 19 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 20 H -0.25 -10.58 5.19 99.48 0.52 -10.06 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 22 C 0.16 5.59 3.00 45.34 0.14 5.72 16 23 H 0.05 1.72 7.72 -2.38 -0.02 1.70 16 24 C -0.12 -4.22 5.46 30.59 0.17 -4.05 16 25 C -0.14 -5.51 9.10 71.98 0.65 -4.86 16 26 H 0.11 1.12 7.83 -2.91 -0.02 1.10 16 27 H 0.10 1.25 7.99 -2.91 -0.02 1.23 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.62 7.78 -2.39 -0.02 0.61 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 1.23 7.94 -2.39 -0.02 1.22 16 32 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 33 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.41 7.27 8.37 -92.71 -0.78 6.49 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.05 2.19 6.77 -2.38 -0.02 2.17 16 39 H 0.02 0.91 5.37 -2.39 -0.01 0.89 16 40 H 0.25 15.75 8.73 -92.71 -0.81 14.94 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.05 2.35 5.49 -2.39 -0.01 2.33 16 44 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -69.46 352.35 3.11 -66.35 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -0.05 Total: 16.71 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 5.36 Total: -9.70 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -3.87 Total: -109.25 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.05 Total: -19.14 kcal Atomic # 14 Polarization: 53.31 SS G_CDS: 1.72 Total: 55.02 kcal Total: -69.46 3.11 -66.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489116014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.848 kcal (2) G-P(sol) polarization free energy of solvation -69.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds