Wall clock time and date at job start Tue Mar 31 2020 02:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47357 * 2 1 4 4 H 1.09003 * 115.54762 * 29.28166 * 3 2 1 5 5 C 1.52996 * 117.50163 * 243.60539 * 3 2 1 6 6 C 1.52992 * 60.00291 * 252.51123 * 5 3 2 7 7 H 1.09003 * 117.50078 * 107.48945 * 6 5 3 8 8 C 1.50702 * 117.50142 * 252.51006 * 6 5 3 9 9 O 1.21278 * 119.99706 * 68.61792 * 8 6 5 10 10 N 1.34770 * 119.99947 * 248.62367 * 8 6 5 11 11 C 1.46931 * 120.63374 * 354.96344 * 10 8 6 12 12 C 1.53191 * 108.77832 * 233.58496 * 11 10 8 13 13 C 1.53039 * 109.31071 * 305.36519 * 12 11 10 14 14 C 1.53042 * 109.54006 * 61.36849 * 13 12 11 15 15 C 1.46928 * 120.62844 * 174.68440 * 10 8 6 16 16 H 1.08999 * 109.58601 * 246.19705 * 15 10 8 17 17 C 1.52991 * 109.58757 * 6.62814 * 15 10 8 18 18 N 1.46501 * 109.47482 * 181.18457 * 17 15 10 19 19 C 1.36937 * 120.00477 * 185.46025 * 18 17 15 20 20 H 1.07997 * 119.99786 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99986 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00409 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00087 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46814 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47592 * 119.99472 * 23 21 19 26 26 H 1.48497 * 109.46829 * 239.99932 * 23 21 19 27 27 H 1.09000 * 109.46858 * 300.00262 * 1 2 3 28 28 H 1.08997 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47343 * 59.99597 * 1 2 3 30 30 H 1.09005 * 109.47343 * 120.00403 * 2 1 3 31 31 H 1.08999 * 109.47169 * 240.00185 * 2 1 3 32 32 H 1.09004 * 117.49803 * 0.02562 * 5 3 2 33 33 H 1.08997 * 117.50125 * 144.99234 * 5 3 2 34 34 H 1.09004 * 109.58488 * 353.37707 * 11 10 8 35 35 H 1.08997 * 109.58527 * 113.65527 * 11 10 8 36 36 H 1.08999 * 109.49232 * 65.31557 * 12 11 10 37 37 H 1.08990 * 109.49788 * 185.41068 * 12 11 10 38 38 H 1.09003 * 109.45713 * 181.38172 * 13 12 11 39 39 H 1.08991 * 109.46325 * 301.34059 * 13 12 11 40 40 H 1.08999 * 109.50113 * 58.57500 * 14 13 12 41 41 H 1.08998 * 109.49874 * 178.68506 * 14 13 12 42 42 H 1.08998 * 109.47278 * 301.18189 * 17 15 10 43 43 H 1.09003 * 109.47472 * 61.18203 * 17 15 10 44 44 H 0.97006 * 119.99423 * 5.45825 * 18 17 15 45 45 H 0.97003 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1717 0.4810 5 6 2.8443 1.9075 -1.2156 6 6 3.5501 1.6579 0.1186 7 1 4.1803 0.7719 0.1967 8 6 4.0227 2.8620 0.8919 9 8 3.2155 3.6167 1.3916 10 7 5.3422 3.1002 1.0279 11 6 6.3323 2.1387 0.5238 12 6 7.2934 1.7787 1.6611 13 6 7.8988 3.0608 2.2371 14 6 6.7848 3.9418 2.8070 15 6 5.8179 4.3291 1.6776 16 1 6.3352 4.9517 0.9476 17 6 4.6282 5.0957 2.2586 18 7 5.1022 6.3344 2.8810 19 6 4.2280 7.1336 3.5681 20 1 3.1890 6.8509 3.6509 21 6 4.6771 8.3074 4.1573 22 7 5.9433 8.6521 4.0560 23 14 3.4847 9.3973 5.0954 24 1 2.1295 8.7908 5.0630 25 1 3.9358 9.5270 6.5041 26 1 3.4405 10.7406 4.4640 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.0097 1.1858 -2.0156 33 1 2.7214 2.9425 -1.5345 34 1 5.8242 1.2392 0.1762 35 1 6.8889 2.5854 -0.3000 36 1 6.7491 1.2499 2.4436 37 1 8.0894 1.1412 1.2766 38 1 8.6017 2.8059 3.0303 39 1 8.4220 3.6015 1.4485 40 1 6.2452 3.3926 3.5786 41 1 7.2189 4.8440 3.2379 42 1 3.9259 5.3359 1.4604 43 1 4.1301 4.4802 3.0077 44 1 6.0355 6.5883 2.8063 45 1 6.2572 9.4722 4.4681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491265210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:54 Heat of formation + Delta-G solvation = 2.772880 kcal Electronic energy + Delta-G solvation = -22789.811277 eV Core-core repulsion = 19615.408881 eV Total energy + Delta-G solvation = -3174.402395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.47502 -38.08646 -36.56139 -34.61521 -32.75827 -32.23476 -31.72511 -29.67580 -26.51087 -24.73626 -24.14806 -23.82735 -22.67448 -21.15666 -20.70719 -20.19615 -18.71694 -17.11820 -16.75265 -15.75659 -15.40258 -14.93315 -14.51471 -14.47609 -14.25083 -14.11324 -13.83950 -13.37003 -13.02291 -12.93140 -12.71594 -12.50100 -12.42369 -12.24659 -11.87212 -11.59602 -11.42504 -11.18159 -10.97319 -10.88453 -10.77137 -10.67466 -10.48662 -10.32493 -10.26938 -10.06131 -9.90365 -9.61370 -8.82129 -8.68190 -8.24287 -6.71675 -5.63093 -2.89052 2.69874 3.09611 3.52455 3.58111 3.61381 3.77807 4.38042 4.61347 4.66704 4.74387 4.78849 4.92451 4.94417 5.04851 5.06860 5.16542 5.25620 5.29558 5.43737 5.50657 5.52314 5.60520 5.66364 5.71720 5.75133 5.83270 5.86205 5.87602 5.93840 5.98009 6.05882 6.06760 6.26508 6.28099 6.33105 6.35179 6.61882 6.82610 7.17317 7.35177 7.67192 7.88297 8.47795 8.59857 9.67549 10.27158 10.62260 11.60668 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.004731 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.713093 B = 5917.122834 C = 7439.441757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.120 4.120 4 H 0.119 0.881 5 C -0.149 4.149 6 C -0.190 4.190 7 H 0.120 0.880 8 C 0.534 3.466 9 O -0.515 6.515 10 N -0.604 5.604 11 C 0.109 3.891 12 C -0.135 4.135 13 C -0.121 4.121 14 C -0.126 4.126 15 C 0.139 3.861 16 H 0.070 0.930 17 C 0.164 3.836 18 N -0.738 5.738 19 C -0.222 4.222 20 H 0.070 0.930 21 C -0.020 4.020 22 N -0.939 5.939 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.043 0.957 43 H 0.035 0.965 44 H 0.378 0.622 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -20.967 -11.262 23.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.139 4.139 4 H 0.137 0.863 5 C -0.187 4.187 6 C -0.211 4.211 7 H 0.138 0.862 8 C 0.322 3.678 9 O -0.390 6.390 10 N -0.338 5.338 11 C -0.014 4.014 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.164 4.164 15 C 0.037 3.963 16 H 0.088 0.912 17 C 0.038 3.962 18 N -0.384 5.384 19 C -0.354 4.354 20 H 0.088 0.912 21 C -0.215 4.215 22 N -0.589 5.589 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.211 0.789 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.950 -20.512 -10.922 23.258 hybrid contribution 0.034 0.691 0.526 0.869 sum -0.916 -19.822 -10.395 22.401 Atomic orbital electron populations 1.21740 0.95231 1.01457 1.02297 1.21138 0.96264 0.93783 1.01878 1.22484 0.91734 0.98548 1.01117 0.86317 1.23067 1.02283 1.03107 0.90213 1.22406 0.97336 0.99313 1.02081 0.86235 1.19640 0.82153 0.85694 0.80325 1.90835 1.54023 1.46949 1.47219 1.48065 1.05064 1.21649 1.59007 1.21722 0.90733 0.92653 0.96273 1.21924 0.98673 0.98250 0.98436 1.21551 0.98041 0.95783 1.00453 1.22003 0.96071 1.00602 0.97710 1.21697 0.96866 0.83917 0.93846 0.91244 1.21269 0.91496 0.87151 0.96269 1.42593 1.09762 1.22118 1.63944 1.19292 0.91703 1.00357 1.24028 0.91175 1.24692 0.96206 0.98584 1.02004 1.69669 1.13446 1.25476 1.50341 0.86124 0.80232 0.80599 0.79412 1.20601 1.22043 1.22033 0.92364 0.92779 0.92539 0.91534 0.91870 0.88127 0.88276 0.89945 0.91547 0.91611 0.91117 0.91887 0.91923 0.91767 0.89645 0.93932 0.94731 0.78861 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.87 37.15 0.37 -0.83 16 2 C -0.09 -0.78 6.22 -26.73 -0.17 -0.95 16 3 C -0.12 -1.31 5.25 -90.62 -0.48 -1.79 16 4 H 0.12 1.59 7.60 -51.93 -0.39 1.20 16 5 C -0.15 -1.49 9.88 -26.74 -0.26 -1.75 16 6 C -0.19 -2.17 4.98 -91.77 -0.46 -2.63 16 7 H 0.12 1.08 6.38 -51.93 -0.33 0.75 16 8 C 0.53 8.55 7.39 -10.99 -0.08 8.47 16 9 O -0.52 -10.57 11.67 5.56 0.06 -10.50 16 10 N -0.60 -8.99 2.97 -164.96 -0.49 -9.48 16 11 C 0.11 1.14 6.33 -3.71 -0.02 1.12 16 12 C -0.13 -1.35 6.08 -26.61 -0.16 -1.52 16 13 C -0.12 -1.48 5.88 -26.69 -0.16 -1.64 16 14 C -0.13 -2.08 5.17 -26.38 -0.14 -2.21 16 15 C 0.14 2.51 3.03 -67.37 -0.20 2.31 16 16 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 17 C 0.16 3.84 4.10 -4.05 -0.02 3.82 16 18 N -0.74 -20.12 5.29 -59.92 -0.32 -20.44 16 19 C -0.22 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 22 N -0.94 -29.45 13.06 55.49 0.72 -28.72 16 23 Si 0.90 23.65 29.55 -169.99 -5.02 18.62 16 24 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.44 7.88 -51.93 -0.41 0.04 16 32 H 0.10 0.75 8.03 -51.93 -0.42 0.34 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 0.68 5.48 -51.93 -0.28 0.39 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.09 1.60 7.30 -51.93 -0.38 1.22 16 42 H 0.04 1.09 6.35 -51.93 -0.33 0.76 16 43 H 0.03 0.88 7.12 -51.93 -0.37 0.51 16 44 H 0.38 10.50 6.90 -40.82 -0.28 10.21 16 45 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 350.39 15.07 5.28 5.28 Total: -1.00 -33.99 350.39 -9.60 -43.59 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -7.82 Total: 6.79 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -2.02 Total: -5.13 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.08 Total: -58.64 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.06 Total: -10.50 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.02 Total: 18.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.99 -9.60 -43.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491265210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.359 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds