Wall clock time and date at job start Tue Mar 31 2020 02:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47357 * 2 1 4 4 H 1.09003 * 115.54762 * 29.28166 * 3 2 1 5 5 C 1.52996 * 117.50163 * 243.60539 * 3 2 1 6 6 C 1.52992 * 60.00291 * 252.51123 * 5 3 2 7 7 H 1.09003 * 117.50078 * 107.48945 * 6 5 3 8 8 C 1.50702 * 117.50142 * 252.51006 * 6 5 3 9 9 O 1.21278 * 119.99706 * 68.61792 * 8 6 5 10 10 N 1.34770 * 119.99947 * 248.62367 * 8 6 5 11 11 C 1.46931 * 120.63374 * 354.96344 * 10 8 6 12 12 C 1.53191 * 108.77832 * 233.58496 * 11 10 8 13 13 C 1.53039 * 109.31071 * 305.36519 * 12 11 10 14 14 C 1.53042 * 109.54006 * 61.36849 * 13 12 11 15 15 C 1.46928 * 120.62844 * 174.68440 * 10 8 6 16 16 H 1.08999 * 109.58601 * 246.19705 * 15 10 8 17 17 C 1.52991 * 109.58757 * 6.62814 * 15 10 8 18 18 N 1.46501 * 109.47482 * 181.18457 * 17 15 10 19 19 C 1.36937 * 120.00477 * 185.46025 * 18 17 15 20 20 H 1.07997 * 119.99786 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99986 * 180.02562 * 19 18 17 22 22 N 1.31621 * 120.00409 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00087 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46814 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47592 * 119.99472 * 23 21 19 26 26 H 1.48497 * 109.46829 * 239.99932 * 23 21 19 27 27 H 1.09000 * 109.46858 * 300.00262 * 1 2 3 28 28 H 1.08997 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47343 * 59.99597 * 1 2 3 30 30 H 1.09005 * 109.47343 * 120.00403 * 2 1 3 31 31 H 1.08999 * 109.47169 * 240.00185 * 2 1 3 32 32 H 1.09004 * 117.49803 * 0.02562 * 5 3 2 33 33 H 1.08997 * 117.50125 * 144.99234 * 5 3 2 34 34 H 1.09004 * 109.58488 * 353.37707 * 11 10 8 35 35 H 1.08997 * 109.58527 * 113.65527 * 11 10 8 36 36 H 1.08999 * 109.49232 * 65.31557 * 12 11 10 37 37 H 1.08990 * 109.49788 * 185.41068 * 12 11 10 38 38 H 1.09003 * 109.45713 * 181.38172 * 13 12 11 39 39 H 1.08991 * 109.46325 * 301.34059 * 13 12 11 40 40 H 1.08999 * 109.50113 * 58.57500 * 14 13 12 41 41 H 1.08998 * 109.49874 * 178.68506 * 14 13 12 42 42 H 1.08998 * 109.47278 * 301.18189 * 17 15 10 43 43 H 1.09003 * 109.47472 * 61.18203 * 17 15 10 44 44 H 0.97006 * 119.99423 * 5.45825 * 18 17 15 45 45 H 0.97003 * 120.00284 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1717 0.4810 5 6 2.8443 1.9075 -1.2156 6 6 3.5501 1.6579 0.1186 7 1 4.1803 0.7719 0.1967 8 6 4.0227 2.8620 0.8919 9 8 3.2155 3.6167 1.3916 10 7 5.3422 3.1002 1.0279 11 6 6.3323 2.1387 0.5238 12 6 7.2934 1.7787 1.6611 13 6 7.8988 3.0608 2.2371 14 6 6.7848 3.9418 2.8070 15 6 5.8179 4.3291 1.6776 16 1 6.3352 4.9517 0.9476 17 6 4.6282 5.0957 2.2586 18 7 5.1022 6.3344 2.8810 19 6 4.2280 7.1336 3.5681 20 1 3.1890 6.8509 3.6509 21 6 4.6771 8.3074 4.1573 22 7 5.9433 8.6521 4.0560 23 14 3.4847 9.3973 5.0954 24 1 2.1295 8.7908 5.0630 25 1 3.9358 9.5270 6.5041 26 1 3.4405 10.7406 4.4640 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.0097 1.1858 -2.0156 33 1 2.7214 2.9425 -1.5345 34 1 5.8242 1.2392 0.1762 35 1 6.8889 2.5854 -0.3000 36 1 6.7491 1.2499 2.4436 37 1 8.0894 1.1412 1.2766 38 1 8.6017 2.8059 3.0303 39 1 8.4220 3.6015 1.4485 40 1 6.2452 3.3926 3.5786 41 1 7.2189 4.8440 3.2379 42 1 3.9259 5.3359 1.4604 43 1 4.1301 4.4802 3.0077 44 1 6.0355 6.5883 2.8063 45 1 6.2572 9.4722 4.4681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491265210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:53 Heat of formation + Delta-G solvation = -18.741403 kcal Electronic energy + Delta-G solvation = -22790.744206 eV Core-core repulsion = 19615.408881 eV Total energy + Delta-G solvation = -3175.335325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70754 -39.14043 -37.69284 -36.57815 -34.01684 -33.73944 -32.77276 -31.43748 -28.00135 -26.32653 -25.18827 -24.75916 -24.29520 -22.59381 -21.69093 -21.19789 -19.95552 -19.14602 -18.03327 -17.10185 -16.64043 -16.54409 -15.75734 -15.55830 -15.51114 -15.19361 -15.11003 -14.93084 -14.46828 -14.43435 -14.11635 -13.59670 -13.36862 -13.31652 -13.08997 -12.96226 -12.87659 -12.70701 -12.21708 -12.16925 -12.08195 -12.00952 -11.92329 -11.82800 -11.59500 -11.39343 -11.20601 -11.01099 -10.83674 -10.17411 -9.57759 -8.98090 -7.99207 -5.27521 1.41649 1.43426 1.52972 1.54466 1.92087 2.53460 2.87822 3.33271 3.43943 3.74674 3.77724 3.83234 3.92430 3.95838 4.08319 4.12504 4.17856 4.26560 4.29873 4.42250 4.49401 4.58229 4.62095 4.69863 4.79504 4.81215 4.94181 4.96264 5.02736 5.06875 5.11380 5.16355 5.17080 5.25214 5.25712 5.28699 5.31855 5.42882 5.46583 5.51546 5.67477 6.23708 6.49951 7.25747 7.29692 8.03453 8.31716 9.24552 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015142 B = 0.004731 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.713093 B = 5917.122834 C = 7439.441757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.085 4.085 3 C -0.129 4.129 4 H 0.080 0.920 5 C -0.131 4.131 6 C -0.188 4.188 7 H 0.158 0.842 8 C 0.521 3.479 9 O -0.576 6.576 10 N -0.602 5.602 11 C 0.102 3.898 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.118 4.118 15 C 0.148 3.852 16 H 0.069 0.931 17 C 0.179 3.821 18 N -0.745 5.745 19 C -0.245 4.245 20 H 0.059 0.941 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.974 3.026 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.286 1.286 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.007 0.993 44 H 0.373 0.627 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.641 -23.677 -12.824 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 C -0.148 4.148 4 H 0.099 0.901 5 C -0.169 4.169 6 C -0.208 4.208 7 H 0.175 0.825 8 C 0.311 3.689 9 O -0.456 6.456 10 N -0.334 5.334 11 C -0.019 4.019 12 C -0.166 4.166 13 C -0.153 4.153 14 C -0.157 4.157 15 C 0.044 3.956 16 H 0.087 0.913 17 C 0.053 3.947 18 N -0.390 5.390 19 C -0.377 4.377 20 H 0.078 0.922 21 C -0.263 4.263 22 N -0.617 5.617 23 Si 0.803 3.197 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.213 1.213 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.159 0.841 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.025 0.975 44 H 0.206 0.794 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.054 -23.272 -12.511 26.421 hybrid contribution -0.295 1.551 1.007 1.873 sum -0.241 -21.720 -11.504 24.580 Atomic orbital electron populations 1.21756 0.95367 1.02268 1.01511 1.21135 0.96123 0.91771 1.03229 1.22488 0.91016 0.99583 1.01728 0.90128 1.23170 1.00344 1.03004 0.90353 1.22402 0.97980 0.98079 1.02363 0.82510 1.20585 0.81939 0.86517 0.79866 1.90808 1.55527 1.49462 1.49802 1.48196 1.05912 1.21149 1.58188 1.22153 0.90173 0.92765 0.96817 1.21928 0.99461 0.97178 0.98046 1.21536 0.96456 0.96187 1.01079 1.21882 0.96996 1.00095 0.96722 1.21332 0.94677 0.85229 0.94397 0.91307 1.21070 0.93216 0.85927 0.94459 1.42727 1.09183 1.23141 1.63949 1.19522 0.91769 1.01413 1.24965 0.92248 1.25527 0.98111 0.99754 1.02906 1.69810 1.15031 1.25902 1.50979 0.85064 0.78205 0.78459 0.77982 1.19960 1.21237 1.21301 0.94096 0.91085 0.92514 0.91291 0.89214 0.84146 0.90391 0.86610 0.89822 0.92185 0.87150 0.90674 0.90954 0.93592 0.92675 0.96450 0.97464 0.79438 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.87 71.98 0.71 -1.52 16 2 C -0.09 -1.22 6.22 30.59 0.19 -1.03 16 3 C -0.13 -2.73 5.25 -10.79 -0.06 -2.78 16 4 H 0.08 2.33 7.60 -2.39 -0.02 2.32 16 5 C -0.13 -2.33 9.88 30.59 0.30 -2.03 16 6 C -0.19 -3.92 4.98 -11.54 -0.06 -3.97 16 7 H 0.16 2.08 6.38 -2.39 -0.02 2.06 16 8 C 0.52 16.97 7.39 87.66 0.65 17.62 16 9 O -0.58 -25.52 11.67 -3.02 -0.04 -25.56 16 10 N -0.60 -17.63 2.97 -794.22 -2.36 -19.99 16 11 C 0.10 1.76 6.33 86.36 0.55 2.30 16 12 C -0.13 -2.09 6.08 30.67 0.19 -1.91 16 13 C -0.12 -2.60 5.88 30.62 0.18 -2.42 16 14 C -0.12 -4.04 5.17 30.82 0.16 -3.88 16 15 C 0.15 5.53 3.03 45.12 0.14 5.67 16 16 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 17 C 0.18 8.99 4.10 86.38 0.35 9.34 16 18 N -0.74 -43.07 5.29 -343.47 -1.82 -44.88 16 19 C -0.24 -15.43 9.99 84.03 0.84 -14.59 16 20 H 0.06 3.79 7.83 -2.91 -0.02 3.76 16 21 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 22 N -0.97 -61.90 13.06 21.65 0.28 -61.62 16 23 Si 0.97 49.61 29.55 68.60 2.03 51.64 16 24 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 27 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.09 0.85 7.88 -2.39 -0.02 0.83 16 32 H 0.14 1.41 8.03 -2.39 -0.02 1.40 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.12 1.27 5.48 -2.38 -0.01 1.26 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 41 H 0.05 2.18 7.30 -2.39 -0.02 2.17 16 42 H 0.02 0.98 6.35 -2.39 -0.02 0.96 16 43 H 0.01 0.41 7.12 -2.39 -0.02 0.39 16 44 H 0.37 21.89 6.90 -92.70 -0.64 21.25 16 45 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -79.74 350.39 3.03 -76.71 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.32 Total: 26.80 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 4.61 Total: -3.09 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -3.89 Total: -126.49 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.04 Total: -25.56 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.03 Total: 51.64 kcal Total: -79.74 3.03 -76.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491265210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.968 kcal (2) G-P(sol) polarization free energy of solvation -79.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds