Wall clock time and date at job start Tue Mar 31 2020 01:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32986 * 120.00160 * 2 1 4 4 C 1.47103 * 120.00177 * 172.07280 * 3 2 1 5 5 O 1.21616 * 119.99751 * 354.00355 * 4 3 2 6 6 N 1.34781 * 119.99974 * 174.00313 * 4 3 2 7 7 C 1.46503 * 119.99745 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.46854 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.47435 * 294.99864 * 8 7 6 10 10 N 1.46503 * 109.47311 * 55.00039 * 8 7 6 11 11 C 1.36938 * 119.99785 * 205.00423 * 10 8 7 12 12 H 1.08003 * 120.00364 * 359.97438 * 11 10 8 13 13 C 1.38816 * 119.99911 * 179.97438 * 11 10 8 14 14 N 1.31618 * 120.00317 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99798 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46772 * 90.00251 * 15 13 11 17 17 H 1.48497 * 109.47088 * 209.99976 * 15 13 11 18 18 H 1.48491 * 109.47371 * 330.00380 * 15 13 11 19 19 C 1.53000 * 109.47284 * 174.99715 * 8 7 6 20 20 C 1.53006 * 109.46827 * 59.99869 * 19 8 7 21 21 C 1.52994 * 109.47261 * 179.97438 * 19 8 7 22 22 C 1.50703 * 119.99729 * 179.72694 * 2 1 3 23 23 C 1.53002 * 117.50103 * 356.88798 * 22 2 1 24 24 C 1.52992 * 117.50222 * 288.26024 * 22 2 1 25 25 H 1.09002 * 109.47070 * 270.27133 * 1 2 3 26 26 H 1.08994 * 109.47489 * 30.27029 * 1 2 3 27 27 H 1.09004 * 109.47329 * 150.27476 * 1 2 3 28 28 H 1.08004 * 120.00071 * 352.07821 * 3 2 1 29 29 H 0.97000 * 120.00166 * 0.02562 * 6 4 3 30 30 H 1.09006 * 109.46854 * 299.99776 * 7 6 4 31 31 H 1.08994 * 109.47216 * 60.00027 * 7 6 4 32 32 H 0.96994 * 119.99772 * 24.99398 * 10 8 7 33 33 H 0.97000 * 120.00052 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47006 * 300.00412 * 19 8 7 35 35 H 1.08999 * 109.46779 * 59.99923 * 20 19 8 36 36 H 1.09000 * 109.46924 * 180.02562 * 20 19 8 37 37 H 1.09004 * 109.47129 * 300.00260 * 20 19 8 38 38 H 1.09002 * 109.46862 * 60.00590 * 21 19 8 39 39 H 1.09000 * 109.47046 * 179.97438 * 21 19 8 40 40 H 1.08994 * 109.47513 * 299.99997 * 21 19 8 41 41 H 1.09003 * 115.54672 * 142.59104 * 22 2 1 42 42 H 1.08996 * 117.49858 * 359.97438 * 23 22 2 43 43 H 1.08997 * 117.49597 * 145.02127 * 23 22 2 44 44 H 1.09002 * 117.50462 * 214.97903 * 24 22 2 45 45 H 1.09007 * 117.49635 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6324 1.1578 0.1757 5 8 4.2186 0.1229 0.4295 6 7 4.3209 2.3102 0.0553 7 6 5.7755 2.3161 0.2298 8 6 6.3058 3.7389 0.0420 9 1 6.1375 4.0566 -0.9870 10 7 5.6044 4.6459 0.9540 11 6 5.5055 5.9781 0.6529 12 1 5.9449 6.3603 -0.2567 13 6 4.8405 6.8374 1.5167 14 7 4.7458 8.1180 1.2276 15 14 4.0798 6.1763 3.0896 16 1 5.0770 6.2437 4.1879 17 1 2.8932 6.9943 3.4474 18 1 3.6647 4.7655 2.8838 19 6 7.8050 3.7687 0.3462 20 6 8.5375 2.8215 -0.6062 21 6 8.3354 5.1914 0.1578 22 6 2.2604 -1.3052 0.0062 23 6 1.4401 -2.5942 0.0860 24 6 2.2454 -2.1234 1.2988 25 1 -0.3633 0.0049 1.0277 26 1 -0.3634 0.8875 -0.5180 27 1 -0.3634 -0.8925 -0.5096 28 1 1.6397 2.0826 -0.1289 29 1 3.8533 3.1357 -0.1467 30 1 6.0227 1.9651 1.2317 31 1 6.2327 1.6579 -0.5089 32 1 5.2100 4.3027 1.7709 33 1 4.2808 8.7183 1.8311 34 1 7.9732 3.4511 1.3752 35 1 8.3691 3.1391 -1.6352 36 1 9.6055 2.8424 -0.3892 37 1 8.1596 1.8078 -0.4724 38 1 7.8136 5.8665 0.8361 39 1 9.4033 5.2127 0.3750 40 1 8.1672 5.5086 -0.8713 41 1 3.1720 -1.3245 -0.5911 42 1 0.3554 -2.4982 0.1345 43 1 1.8118 -3.4618 -0.4589 44 1 3.1469 -2.6816 1.5518 45 1 1.6909 -1.7176 2.1450 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496533516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:06 Heat of formation + Delta-G solvation = 4.392665 kcal Electronic energy + Delta-G solvation = -22384.226527 eV Core-core repulsion = 19209.894371 eV Total energy + Delta-G solvation = -3174.332156 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.71063 -37.98118 -37.07195 -33.81989 -33.40936 -33.13839 -30.84210 -28.91360 -27.49992 -26.23528 -24.01559 -22.97637 -22.37505 -21.71062 -20.45392 -19.56931 -18.60684 -17.57462 -16.76283 -16.03431 -15.45014 -15.09396 -14.66647 -14.42648 -14.06437 -13.72020 -13.58179 -13.26069 -13.09056 -12.96786 -12.73451 -12.45780 -12.35767 -12.13121 -11.64402 -11.60680 -11.31137 -11.23517 -11.09390 -10.88506 -10.82393 -10.59800 -10.39835 -10.27545 -10.14040 -9.97614 -9.50094 -9.35367 -8.96996 -8.93889 -8.53710 -7.34296 -5.82822 -3.18614 1.38892 3.32982 3.37656 3.42357 3.49037 3.61994 3.93772 4.50834 4.53730 4.77342 4.95471 5.03934 5.08097 5.16597 5.28013 5.36244 5.40330 5.42375 5.50379 5.55796 5.58953 5.69011 5.73101 5.81072 5.82827 5.91843 6.05823 6.09280 6.18544 6.20605 6.31072 6.35894 6.39379 6.50255 6.55163 6.58865 6.66170 6.90681 7.01406 7.33436 7.93539 7.95015 8.35568 8.58814 9.13828 9.86210 10.05832 11.34838 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015745 B = 0.004759 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.967051 B = 5882.285392 C = 7164.313847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.015 4.015 3 C -0.218 4.218 4 C 0.540 3.460 5 O -0.549 6.549 6 N -0.714 5.714 7 C 0.112 3.888 8 C 0.175 3.825 9 H 0.062 0.938 10 N -0.747 5.747 11 C -0.241 4.241 12 H 0.095 0.905 13 C 0.008 3.992 14 N -0.931 5.931 15 Si 0.879 3.121 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.277 1.277 19 C -0.108 4.108 20 C -0.149 4.149 21 C -0.140 4.140 22 C -0.107 4.107 23 C -0.193 4.193 24 C -0.153 4.153 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.409 0.591 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.362 0.638 33 H 0.259 0.741 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.127 0.873 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.610 -17.030 -3.430 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.017 4.017 3 C -0.238 4.238 4 C 0.329 3.671 5 O -0.430 6.430 6 N -0.365 5.365 7 C -0.012 4.012 8 C 0.065 3.935 9 H 0.080 0.920 10 N -0.389 5.389 11 C -0.371 4.371 12 H 0.112 0.888 13 C -0.188 4.188 14 N -0.578 5.578 15 Si 0.709 3.291 16 H -0.212 1.212 17 H -0.219 1.219 18 H -0.203 1.203 19 C -0.130 4.130 20 C -0.207 4.207 21 C -0.197 4.197 22 C -0.124 4.124 23 C -0.230 4.230 24 C -0.190 4.190 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.146 0.854 29 H 0.245 0.755 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.195 0.805 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.176 -17.482 -3.365 18.286 hybrid contribution -0.695 0.269 1.184 1.399 sum -4.871 -17.214 -2.181 18.022 Atomic orbital electron populations 1.21004 0.91259 1.03285 1.02778 1.21736 0.95088 0.93294 0.91601 1.22484 0.93907 0.98668 1.08789 1.18518 0.87694 0.83548 0.77351 1.90723 1.71196 1.31760 1.49305 1.45959 1.08568 1.10748 1.71206 1.21743 0.79744 0.98437 1.01323 1.20530 0.90453 0.87327 0.95210 0.92041 1.42836 1.66061 1.06055 1.23987 1.19054 1.29703 0.82036 1.06266 0.88771 1.24644 1.00667 0.95267 0.98236 1.69690 1.47622 1.02436 1.38092 0.86645 0.79228 0.78061 0.85132 1.21190 1.21875 1.20316 1.21694 0.96493 0.96027 0.98793 1.21935 0.99757 0.99179 0.99790 1.21826 0.98583 0.96862 1.02418 1.21273 1.00231 0.88162 1.02782 1.23156 0.98480 0.98326 1.03056 1.22762 1.01980 1.02722 0.91580 0.90495 0.90915 0.90924 0.85416 0.75491 0.92109 0.91321 0.80512 0.93044 0.92052 0.93019 0.93442 0.93090 0.89304 0.94987 0.93776 0.85502 0.88757 0.88869 0.88701 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 9.45 36.01 0.34 -0.76 16 2 C -0.02 -0.18 5.80 -101.17 -0.59 -0.77 16 3 C -0.22 -2.93 9.63 -37.81 -0.36 -3.29 16 4 C 0.54 8.75 7.67 -12.66 -0.10 8.65 16 5 O -0.55 -9.94 13.45 5.26 0.07 -9.87 16 6 N -0.71 -11.57 5.38 -61.49 -0.33 -11.90 16 7 C 0.11 1.83 4.73 -4.04 -0.02 1.81 16 8 C 0.17 3.10 2.18 -67.93 -0.15 2.95 16 9 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 10 N -0.75 -16.03 4.24 -53.42 -0.23 -16.26 16 11 C -0.24 -6.17 8.05 -15.06 -0.12 -6.29 16 12 H 0.09 2.60 7.62 -52.48 -0.40 2.20 16 13 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 14 N -0.93 -27.88 13.97 55.49 0.78 -27.10 16 15 Si 0.88 21.31 27.73 -169.99 -4.71 16.60 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 18 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 19 C -0.11 -1.80 2.69 -90.62 -0.24 -2.04 16 20 C -0.15 -2.04 8.84 37.16 0.33 -1.72 16 21 C -0.14 -2.53 8.26 37.15 0.31 -2.23 16 22 C -0.11 -1.32 4.12 -91.77 -0.38 -1.69 16 23 C -0.19 -1.85 9.78 -26.73 -0.26 -2.12 16 24 C -0.15 -1.75 10.22 -26.73 -0.27 -2.02 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.57 8.06 -51.93 -0.42 0.16 16 27 H 0.07 0.54 6.44 -51.93 -0.33 0.21 16 28 H 0.13 1.51 8.04 -52.48 -0.42 1.09 16 29 H 0.41 6.66 8.12 -40.82 -0.33 6.32 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 32 H 0.36 7.96 5.66 -40.82 -0.23 7.73 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 38 H 0.09 1.93 6.01 -51.93 -0.31 1.62 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.13 1.83 6.62 -51.93 -0.34 1.48 16 42 H 0.09 0.77 6.35 -51.93 -0.33 0.44 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -29.62 356.43 -8.29 -37.92 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -7.63 Total: 14.65 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.61 Total: -9.40 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.22 Total: -55.26 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.07 Total: -9.87 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.62 -8.29 -37.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496533516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.309 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds