Wall clock time and date at job start Tue Mar 31 2020 01:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32986 * 120.00160 * 2 1 4 4 C 1.47103 * 120.00177 * 172.07280 * 3 2 1 5 5 O 1.21616 * 119.99751 * 354.00355 * 4 3 2 6 6 N 1.34781 * 119.99974 * 174.00313 * 4 3 2 7 7 C 1.46503 * 119.99745 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.46854 * 179.97438 * 7 6 4 9 9 H 1.09000 * 109.47435 * 294.99864 * 8 7 6 10 10 N 1.46503 * 109.47311 * 55.00039 * 8 7 6 11 11 C 1.36938 * 119.99785 * 205.00423 * 10 8 7 12 12 H 1.08003 * 120.00364 * 359.97438 * 11 10 8 13 13 C 1.38816 * 119.99911 * 179.97438 * 11 10 8 14 14 N 1.31618 * 120.00317 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99798 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.46772 * 90.00251 * 15 13 11 17 17 H 1.48497 * 109.47088 * 209.99976 * 15 13 11 18 18 H 1.48491 * 109.47371 * 330.00380 * 15 13 11 19 19 C 1.53000 * 109.47284 * 174.99715 * 8 7 6 20 20 C 1.53006 * 109.46827 * 59.99869 * 19 8 7 21 21 C 1.52994 * 109.47261 * 179.97438 * 19 8 7 22 22 C 1.50703 * 119.99729 * 179.72694 * 2 1 3 23 23 C 1.53002 * 117.50103 * 356.88798 * 22 2 1 24 24 C 1.52992 * 117.50222 * 288.26024 * 22 2 1 25 25 H 1.09002 * 109.47070 * 270.27133 * 1 2 3 26 26 H 1.08994 * 109.47489 * 30.27029 * 1 2 3 27 27 H 1.09004 * 109.47329 * 150.27476 * 1 2 3 28 28 H 1.08004 * 120.00071 * 352.07821 * 3 2 1 29 29 H 0.97000 * 120.00166 * 0.02562 * 6 4 3 30 30 H 1.09006 * 109.46854 * 299.99776 * 7 6 4 31 31 H 1.08994 * 109.47216 * 60.00027 * 7 6 4 32 32 H 0.96994 * 119.99772 * 24.99398 * 10 8 7 33 33 H 0.97000 * 120.00052 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47006 * 300.00412 * 19 8 7 35 35 H 1.08999 * 109.46779 * 59.99923 * 20 19 8 36 36 H 1.09000 * 109.46924 * 180.02562 * 20 19 8 37 37 H 1.09004 * 109.47129 * 300.00260 * 20 19 8 38 38 H 1.09002 * 109.46862 * 60.00590 * 21 19 8 39 39 H 1.09000 * 109.47046 * 179.97438 * 21 19 8 40 40 H 1.08994 * 109.47513 * 299.99997 * 21 19 8 41 41 H 1.09003 * 115.54672 * 142.59104 * 22 2 1 42 42 H 1.08996 * 117.49858 * 359.97438 * 23 22 2 43 43 H 1.08997 * 117.49597 * 145.02127 * 23 22 2 44 44 H 1.09002 * 117.50462 * 214.97903 * 24 22 2 45 45 H 1.09007 * 117.49635 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6324 1.1578 0.1757 5 8 4.2186 0.1229 0.4295 6 7 4.3209 2.3102 0.0553 7 6 5.7755 2.3161 0.2298 8 6 6.3058 3.7389 0.0420 9 1 6.1375 4.0566 -0.9870 10 7 5.6044 4.6459 0.9540 11 6 5.5055 5.9781 0.6529 12 1 5.9449 6.3603 -0.2567 13 6 4.8405 6.8374 1.5167 14 7 4.7458 8.1180 1.2276 15 14 4.0798 6.1763 3.0896 16 1 5.0770 6.2437 4.1879 17 1 2.8932 6.9943 3.4474 18 1 3.6647 4.7655 2.8838 19 6 7.8050 3.7687 0.3462 20 6 8.5375 2.8215 -0.6062 21 6 8.3354 5.1914 0.1578 22 6 2.2604 -1.3052 0.0062 23 6 1.4401 -2.5942 0.0860 24 6 2.2454 -2.1234 1.2988 25 1 -0.3633 0.0049 1.0277 26 1 -0.3634 0.8875 -0.5180 27 1 -0.3634 -0.8925 -0.5096 28 1 1.6397 2.0826 -0.1289 29 1 3.8533 3.1357 -0.1467 30 1 6.0227 1.9651 1.2317 31 1 6.2327 1.6579 -0.5089 32 1 5.2100 4.3027 1.7709 33 1 4.2808 8.7183 1.8311 34 1 7.9732 3.4511 1.3752 35 1 8.3691 3.1391 -1.6352 36 1 9.6055 2.8424 -0.3892 37 1 8.1596 1.8078 -0.4724 38 1 7.8136 5.8665 0.8361 39 1 9.4033 5.2127 0.3750 40 1 8.1672 5.5086 -0.8713 41 1 3.1720 -1.3245 -0.5911 42 1 0.3554 -2.4982 0.1345 43 1 1.8118 -3.4618 -0.4589 44 1 3.1469 -2.6816 1.5518 45 1 1.6909 -1.7176 2.1450 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496533516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:06 Heat of formation + Delta-G solvation = -13.567490 kcal Electronic energy + Delta-G solvation = -22385.005338 eV Core-core repulsion = 19209.894371 eV Total energy + Delta-G solvation = -3175.110967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91192 -39.20210 -38.30711 -35.19761 -34.93839 -34.30978 -32.70556 -30.19753 -28.59139 -27.58134 -25.51221 -24.26282 -23.30006 -23.07152 -21.69648 -21.01538 -19.92387 -19.16888 -17.94650 -17.19450 -17.04054 -16.27123 -15.92926 -15.90907 -15.53797 -14.97387 -14.79763 -14.54690 -14.46948 -14.18197 -14.01744 -13.80578 -13.46991 -13.15448 -12.98483 -12.93032 -12.85185 -12.52460 -12.44680 -12.24553 -12.11525 -11.95401 -11.78269 -11.68223 -11.49194 -11.33756 -11.28774 -10.90791 -10.51239 -10.07841 -9.68984 -9.27859 -7.95935 -5.27932 0.38292 1.38941 1.41065 1.47168 2.32262 2.39951 2.51150 3.06580 3.35579 3.56175 3.63521 3.85197 3.89307 4.06315 4.18070 4.23468 4.27018 4.27250 4.42939 4.44632 4.60511 4.67150 4.72087 4.73675 4.84909 4.90245 4.94404 4.97325 5.04424 5.08373 5.15504 5.23026 5.24283 5.27383 5.32639 5.45814 5.56622 5.61027 5.64582 5.75833 5.86508 6.26720 6.68320 7.12340 7.33977 7.86932 8.05998 9.25182 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015745 B = 0.004759 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.967051 B = 5882.285392 C = 7164.313847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.003 3.997 3 C -0.247 4.247 4 C 0.535 3.465 5 O -0.574 6.574 6 N -0.718 5.718 7 C 0.122 3.878 8 C 0.176 3.824 9 H 0.056 0.944 10 N -0.746 5.746 11 C -0.204 4.204 12 H 0.068 0.932 13 C -0.057 4.057 14 N -0.982 5.982 15 Si 0.940 3.060 16 H -0.290 1.290 17 H -0.301 1.301 18 H -0.256 1.256 19 C -0.105 4.105 20 C -0.141 4.141 21 C -0.134 4.134 22 C -0.133 4.133 23 C -0.164 4.164 24 C -0.163 4.163 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.141 0.859 29 H 0.408 0.592 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.362 0.638 33 H 0.254 0.746 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.039 0.961 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -19.719 -3.455 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.001 3.999 3 C -0.268 4.268 4 C 0.326 3.674 5 O -0.457 6.457 6 N -0.368 5.368 7 C -0.002 4.002 8 C 0.068 3.932 9 H 0.074 0.926 10 N -0.389 5.389 11 C -0.335 4.335 12 H 0.086 0.914 13 C -0.249 4.249 14 N -0.633 5.633 15 Si 0.770 3.230 16 H -0.217 1.217 17 H -0.228 1.228 18 H -0.181 1.181 19 C -0.126 4.126 20 C -0.198 4.198 21 C -0.191 4.191 22 C -0.151 4.151 23 C -0.201 4.201 24 C -0.200 4.200 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.159 0.841 29 H 0.244 0.756 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.195 0.805 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.119 0.881 42 H 0.135 0.865 43 H 0.122 0.878 44 H 0.105 0.895 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.161 -20.234 -3.408 21.158 hybrid contribution -0.305 0.997 1.096 1.513 sum -5.466 -19.237 -2.311 20.132 Atomic orbital electron populations 1.21107 0.88526 1.04741 1.03891 1.22123 0.96894 0.92466 0.88378 1.22494 0.92367 1.00048 1.11893 1.18992 0.88869 0.82933 0.76594 1.90710 1.71972 1.32413 1.50562 1.45994 1.08440 1.10910 1.71484 1.21602 0.80179 0.97101 1.01334 1.20661 0.91119 0.87473 0.93970 0.92590 1.42809 1.66486 1.04977 1.24589 1.18945 1.26652 0.83562 1.04366 0.91404 1.25257 1.02581 0.95451 1.01571 1.69847 1.49994 1.03940 1.39567 0.85633 0.77800 0.78314 0.81285 1.21674 1.22817 1.18051 1.21602 0.95525 0.95795 0.99696 1.21848 1.00268 0.98703 0.99015 1.21721 0.99502 0.96967 1.00953 1.21224 1.00541 0.89823 1.03467 1.23263 0.99330 0.96733 1.00742 1.22798 1.02456 1.02841 0.91884 0.89274 0.89876 0.89129 0.84084 0.75600 0.92745 0.90032 0.80475 0.93673 0.92167 0.92562 0.91929 0.91984 0.93391 0.92905 0.94218 0.88137 0.86513 0.87821 0.89467 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.45 71.24 0.67 -1.09 16 2 C 0.00 0.07 5.80 -17.62 -0.10 -0.03 16 3 C -0.25 -6.36 9.63 23.43 0.23 -6.13 16 4 C 0.54 17.02 7.67 86.57 0.66 17.68 16 5 O -0.57 -20.63 13.45 -4.08 -0.05 -20.68 16 6 N -0.72 -22.72 5.38 -466.70 -2.51 -25.23 16 7 C 0.12 3.85 4.73 86.38 0.41 4.26 16 8 C 0.18 6.12 2.18 44.99 0.10 6.22 16 9 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 10 N -0.75 -31.77 4.24 -322.93 -1.37 -33.14 16 11 C -0.20 -10.63 8.05 84.03 0.68 -9.95 16 12 H 0.07 3.87 7.62 -2.91 -0.02 3.85 16 13 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 14 N -0.98 -60.68 13.97 21.65 0.30 -60.38 16 15 Si 0.94 44.53 27.73 68.60 1.90 46.43 16 16 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 17 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 18 H -0.26 -11.03 6.52 99.48 0.65 -10.39 16 19 C -0.10 -3.34 2.69 -10.79 -0.03 -3.36 16 20 C -0.14 -3.51 8.84 71.98 0.64 -2.87 16 21 C -0.13 -4.81 8.26 71.98 0.59 -4.22 16 22 C -0.13 -3.08 4.12 -11.54 -0.05 -3.13 16 23 C -0.16 -2.67 9.78 30.60 0.30 -2.37 16 24 C -0.16 -3.45 10.22 30.59 0.31 -3.14 16 25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.03 8.06 -2.39 -0.02 1.01 16 27 H 0.09 0.96 6.44 -2.38 -0.02 0.94 16 28 H 0.14 3.14 8.04 -2.91 -0.02 3.12 16 29 H 0.41 13.02 8.12 -92.71 -0.75 12.27 16 30 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.08 2.38 6.71 -2.39 -0.02 2.36 16 32 H 0.36 15.55 5.66 -92.71 -0.52 15.02 16 33 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.43 6.54 -2.38 -0.02 1.41 16 38 H 0.05 2.11 6.01 -2.39 -0.01 2.09 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 2.90 6.62 -2.39 -0.02 2.88 16 42 H 0.12 1.39 6.35 -2.39 -0.02 1.38 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -65.49 356.43 2.79 -62.71 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: -0.36 Total: 41.17 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 4.88 Total: -10.87 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -3.58 Total: -118.75 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Total: -65.49 2.79 -62.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496533516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.139 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds