Wall clock time and date at job start Tue Mar 31 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32997 * 120.00008 * 2 1 4 4 C 1.47097 * 120.00084 * 4.29807 * 3 2 1 5 5 O 1.21619 * 119.99996 * 354.10821 * 4 3 2 6 6 N 1.34777 * 120.00164 * 174.11893 * 4 3 2 7 7 C 1.46498 * 120.00178 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47145 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.47319 * 294.99747 * 8 7 6 10 10 N 1.46497 * 109.46924 * 55.00157 * 8 7 6 11 11 C 1.36939 * 119.99575 * 204.99645 * 10 8 7 12 12 H 1.07997 * 120.00415 * 0.02562 * 11 10 8 13 13 C 1.38812 * 119.99816 * 179.71885 * 11 10 8 14 14 N 1.31626 * 119.99932 * 0.28552 * 13 11 10 15 15 Si 1.86795 * 120.00008 * 180.27562 * 13 11 10 16 16 H 1.48504 * 109.47045 * 60.00502 * 15 13 11 17 17 H 1.48502 * 109.47245 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47274 * 300.00407 * 15 13 11 19 19 C 1.53008 * 109.46977 * 174.99873 * 8 7 6 20 20 C 1.53000 * 109.47086 * 59.99962 * 19 8 7 21 21 C 1.52999 * 109.46977 * 179.97438 * 19 8 7 22 22 C 1.50699 * 120.00137 * 180.02562 * 2 1 3 23 23 C 1.53006 * 117.49688 * 4.37721 * 22 2 1 24 24 C 1.53006 * 117.49416 * 295.72264 * 22 2 1 25 25 H 1.08998 * 109.47237 * 64.20512 * 1 2 3 26 26 H 1.08997 * 109.47435 * 184.21106 * 1 2 3 27 27 H 1.09005 * 109.47398 * 304.21042 * 1 2 3 28 28 H 1.08005 * 119.99940 * 184.28652 * 3 2 1 29 29 H 0.96999 * 119.99742 * 359.97438 * 6 4 3 30 30 H 1.09008 * 109.47501 * 59.99381 * 7 6 4 31 31 H 1.08999 * 109.47144 * 299.99320 * 7 6 4 32 32 H 0.96998 * 120.00660 * 24.99494 * 10 8 7 33 33 H 0.97002 * 119.99885 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.46993 * 300.00074 * 19 8 7 35 35 H 1.09008 * 109.47120 * 60.00036 * 20 19 8 36 36 H 1.09002 * 109.46881 * 179.97438 * 20 19 8 37 37 H 1.09001 * 109.47115 * 300.00295 * 20 19 8 38 38 H 1.09003 * 109.47175 * 59.99973 * 21 19 8 39 39 H 1.08999 * 109.47158 * 179.97438 * 21 19 8 40 40 H 1.09000 * 109.47040 * 300.00222 * 21 19 8 41 41 H 1.08997 * 115.55676 * 150.05238 * 22 2 1 42 42 H 1.09005 * 117.49741 * 0.02562 * 23 22 2 43 43 H 1.09002 * 117.49715 * 145.02217 * 23 22 2 44 44 H 1.09000 * 117.49576 * 214.97291 * 24 22 2 45 45 H 1.08991 * 117.50176 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4396 2.4239 0.0955 5 8 0.2238 2.4293 0.0664 6 7 2.1159 3.5836 0.2150 7 6 1.3865 4.8505 0.3095 8 6 2.3831 6.0044 0.4370 9 1 2.9260 5.9134 1.3777 10 7 3.3300 5.9574 -0.6799 11 6 4.5737 6.5149 -0.5469 12 1 4.8567 6.9888 0.3814 13 6 5.4731 6.4653 -1.6031 14 7 5.1284 5.8873 -2.7343 15 14 7.1723 7.2189 -1.4191 16 1 7.8915 6.5520 -0.3040 17 1 7.9345 7.0352 -2.6803 18 1 7.0417 8.6690 -1.1269 19 6 1.6286 7.3353 0.4102 20 6 0.6396 7.3843 1.5766 21 6 2.6251 8.4891 0.5384 22 6 2.2605 -1.3051 -0.0006 23 6 1.4418 -2.5935 -0.1047 24 6 2.1035 -2.2119 1.2218 25 1 -0.3633 0.4472 -0.9252 26 1 -0.3634 -1.0248 0.0755 27 1 -0.3634 0.5778 0.8499 28 1 3.2497 1.1531 -0.0699 29 1 3.0856 3.5792 0.2384 30 1 0.7383 4.8322 1.1857 31 1 0.7820 4.9895 -0.5868 32 1 3.0761 5.5315 -1.5135 33 1 5.7570 5.8523 -3.4723 34 1 1.0857 7.4263 -0.5305 35 1 1.1825 7.2933 2.5174 36 1 0.1024 8.3326 1.5578 37 1 -0.0704 6.5622 1.4858 38 1 3.3300 8.4544 -0.2923 39 1 2.0877 9.4372 0.5189 40 1 3.1676 8.3978 1.4793 41 1 3.2335 -1.2860 -0.4915 42 1 0.3582 -2.4970 -0.1733 43 1 1.8763 -3.4221 -0.6639 44 1 2.9732 -2.7897 1.5347 45 1 1.4557 -1.8644 2.0264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496533517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:10 Heat of formation + Delta-G solvation = 0.391458 kcal Electronic energy + Delta-G solvation = -22126.230625 eV Core-core repulsion = 18951.724964 eV Total energy + Delta-G solvation = -3174.505662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.57778 -38.06530 -37.13083 -33.85295 -33.11694 -32.99542 -30.41391 -28.57360 -27.19518 -26.07448 -24.38835 -23.29848 -22.55888 -21.72798 -20.17164 -19.32741 -18.42271 -17.23595 -16.59908 -16.21920 -15.27691 -15.07941 -14.77198 -14.52968 -13.96299 -13.57362 -13.45888 -13.35476 -12.93739 -12.89685 -12.57118 -12.11171 -12.05473 -12.00759 -11.61472 -11.59670 -11.28687 -11.01661 -10.93696 -10.91373 -10.81311 -10.61614 -10.58009 -10.28881 -10.10938 -9.93425 -9.53284 -9.25447 -8.95999 -8.89423 -8.38948 -7.02066 -5.81185 -3.10382 1.50237 3.39799 3.45369 3.46156 3.53605 3.69006 3.82328 4.52325 4.54960 4.69075 4.76047 4.95052 5.11437 5.35466 5.37028 5.40464 5.48602 5.56117 5.62166 5.65155 5.72985 5.78175 5.89646 5.91462 5.94234 5.97471 6.03550 6.18692 6.21857 6.26846 6.39256 6.47150 6.55678 6.60315 6.62171 6.65492 6.72185 7.02335 7.09925 7.30938 7.66440 8.08176 8.36171 8.70180 9.47988 10.03341 10.39334 11.40547 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.004209 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.927518 B = 6651.448365 C = 8109.391279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.016 4.016 3 C -0.214 4.214 4 C 0.541 3.459 5 O -0.557 6.557 6 N -0.708 5.708 7 C 0.115 3.885 8 C 0.170 3.830 9 H 0.052 0.948 10 N -0.721 5.721 11 C -0.237 4.237 12 H 0.072 0.928 13 C -0.010 4.010 14 N -0.930 5.930 15 Si 0.903 3.097 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.286 1.286 19 C -0.109 4.109 20 C -0.149 4.149 21 C -0.139 4.139 22 C -0.129 4.129 23 C -0.178 4.178 24 C -0.166 4.166 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.126 0.874 29 H 0.410 0.590 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.031 0.969 40 H 0.040 0.960 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 -11.099 7.619 15.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.018 4.018 3 C -0.235 4.235 4 C 0.330 3.670 5 O -0.439 6.439 6 N -0.359 5.359 7 C -0.010 4.010 8 C 0.059 3.941 9 H 0.070 0.930 10 N -0.362 5.362 11 C -0.368 4.368 12 H 0.090 0.910 13 C -0.207 4.207 14 N -0.577 5.577 15 Si 0.734 3.266 16 H -0.213 1.213 17 H -0.218 1.218 18 H -0.213 1.213 19 C -0.131 4.131 20 C -0.207 4.207 21 C -0.197 4.197 22 C -0.147 4.147 23 C -0.214 4.214 24 C -0.203 4.203 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.144 0.856 29 H 0.246 0.754 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.219 0.781 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.794 -10.985 7.636 15.483 hybrid contribution 1.564 0.476 -0.331 1.668 sum -6.230 -10.509 7.304 14.234 Atomic orbital electron populations 1.21076 0.90879 1.00792 1.04460 1.21679 0.96032 0.92217 0.91836 1.22388 1.00397 0.92001 1.08704 1.18461 0.87256 0.84433 0.76857 1.90722 1.13799 1.87665 1.51730 1.45888 1.11291 1.05694 1.72999 1.21697 0.94924 0.83107 1.01235 1.20542 0.89796 0.90585 0.93128 0.92959 1.42453 1.12249 1.68801 1.12738 1.19155 0.89702 1.29580 0.98391 0.91001 1.24724 0.98341 1.01398 0.96206 1.69657 1.35624 1.48701 1.03754 0.86344 0.84599 0.79050 0.76635 1.21328 1.21807 1.21278 1.21728 0.96147 0.97734 0.97498 1.21941 0.99104 1.00736 0.98883 1.21821 0.99401 0.95519 1.02915 1.21247 1.00502 0.89119 1.03800 1.23136 1.00023 0.97727 1.00551 1.22970 1.03371 1.02268 0.91657 0.90128 0.93029 0.89736 0.85619 0.75382 0.91764 0.92041 0.78077 0.93458 0.91922 0.93226 0.93597 0.93039 0.89501 0.95021 0.94085 0.86648 0.87872 0.88468 0.88337 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.22 36.00 0.30 -1.19 16 2 C -0.02 -0.20 5.81 -101.17 -0.59 -0.79 16 3 C -0.21 -3.10 9.67 -37.81 -0.37 -3.47 16 4 C 0.54 9.29 7.72 -12.67 -0.10 9.20 16 5 O -0.56 -10.64 13.10 5.26 0.07 -10.57 16 6 N -0.71 -12.22 5.38 -61.49 -0.33 -12.55 16 7 C 0.11 2.00 4.73 -4.04 -0.02 1.98 16 8 C 0.17 3.16 2.18 -67.93 -0.15 3.01 16 9 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 10 N -0.72 -16.46 4.44 -53.43 -0.24 -16.69 16 11 C -0.24 -6.00 7.57 -15.06 -0.11 -6.12 16 12 H 0.07 1.78 7.40 -52.49 -0.39 1.39 16 13 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 14 N -0.93 -26.75 13.06 55.49 0.72 -26.02 16 15 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 19 C -0.11 -1.88 2.69 -90.62 -0.24 -2.13 16 20 C -0.15 -2.13 8.84 37.16 0.33 -1.80 16 21 C -0.14 -2.53 8.26 37.16 0.31 -2.22 16 22 C -0.13 -1.32 6.01 -91.77 -0.55 -1.87 16 23 C -0.18 -1.50 9.86 -26.69 -0.26 -1.76 16 24 C -0.17 -1.42 10.24 -26.69 -0.27 -1.69 16 25 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 26 H 0.05 0.53 5.44 -51.93 -0.28 0.24 16 27 H 0.08 1.21 6.84 -51.93 -0.36 0.85 16 28 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.41 7.18 8.12 -40.82 -0.33 6.85 16 30 H 0.06 1.05 6.71 -51.92 -0.35 0.71 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.39 9.69 7.80 -40.82 -0.32 9.37 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 38 H 0.09 1.87 6.01 -51.93 -0.31 1.56 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.10 0.85 5.90 -51.93 -0.31 0.54 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -28.49 358.35 -8.81 -37.30 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -7.58 Total: 15.92 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.83 Total: -9.22 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.16 Total: -55.27 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.49 -8.81 -37.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496533517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.688 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds