Wall clock time and date at job start Tue Mar 31 2020 01:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32997 * 120.00008 * 2 1 4 4 C 1.47097 * 120.00084 * 4.29807 * 3 2 1 5 5 O 1.21619 * 119.99996 * 354.10821 * 4 3 2 6 6 N 1.34777 * 120.00164 * 174.11893 * 4 3 2 7 7 C 1.46498 * 120.00178 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47145 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.47319 * 294.99747 * 8 7 6 10 10 N 1.46497 * 109.46924 * 55.00157 * 8 7 6 11 11 C 1.36939 * 119.99575 * 204.99645 * 10 8 7 12 12 H 1.07997 * 120.00415 * 0.02562 * 11 10 8 13 13 C 1.38812 * 119.99816 * 179.71885 * 11 10 8 14 14 N 1.31626 * 119.99932 * 0.28552 * 13 11 10 15 15 Si 1.86795 * 120.00008 * 180.27562 * 13 11 10 16 16 H 1.48504 * 109.47045 * 60.00502 * 15 13 11 17 17 H 1.48502 * 109.47245 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47274 * 300.00407 * 15 13 11 19 19 C 1.53008 * 109.46977 * 174.99873 * 8 7 6 20 20 C 1.53000 * 109.47086 * 59.99962 * 19 8 7 21 21 C 1.52999 * 109.46977 * 179.97438 * 19 8 7 22 22 C 1.50699 * 120.00137 * 180.02562 * 2 1 3 23 23 C 1.53006 * 117.49688 * 4.37721 * 22 2 1 24 24 C 1.53006 * 117.49416 * 295.72264 * 22 2 1 25 25 H 1.08998 * 109.47237 * 64.20512 * 1 2 3 26 26 H 1.08997 * 109.47435 * 184.21106 * 1 2 3 27 27 H 1.09005 * 109.47398 * 304.21042 * 1 2 3 28 28 H 1.08005 * 119.99940 * 184.28652 * 3 2 1 29 29 H 0.96999 * 119.99742 * 359.97438 * 6 4 3 30 30 H 1.09008 * 109.47501 * 59.99381 * 7 6 4 31 31 H 1.08999 * 109.47144 * 299.99320 * 7 6 4 32 32 H 0.96998 * 120.00660 * 24.99494 * 10 8 7 33 33 H 0.97002 * 119.99885 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.46993 * 300.00074 * 19 8 7 35 35 H 1.09008 * 109.47120 * 60.00036 * 20 19 8 36 36 H 1.09002 * 109.46881 * 179.97438 * 20 19 8 37 37 H 1.09001 * 109.47115 * 300.00295 * 20 19 8 38 38 H 1.09003 * 109.47175 * 59.99973 * 21 19 8 39 39 H 1.08999 * 109.47158 * 179.97438 * 21 19 8 40 40 H 1.09000 * 109.47040 * 300.00222 * 21 19 8 41 41 H 1.08997 * 115.55676 * 150.05238 * 22 2 1 42 42 H 1.09005 * 117.49741 * 0.02562 * 23 22 2 43 43 H 1.09002 * 117.49715 * 145.02217 * 23 22 2 44 44 H 1.09000 * 117.49576 * 214.97291 * 24 22 2 45 45 H 1.08991 * 117.50176 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4396 2.4239 0.0955 5 8 0.2238 2.4293 0.0664 6 7 2.1159 3.5836 0.2150 7 6 1.3865 4.8505 0.3095 8 6 2.3831 6.0044 0.4370 9 1 2.9260 5.9134 1.3777 10 7 3.3300 5.9574 -0.6799 11 6 4.5737 6.5149 -0.5469 12 1 4.8567 6.9888 0.3814 13 6 5.4731 6.4653 -1.6031 14 7 5.1284 5.8873 -2.7343 15 14 7.1723 7.2189 -1.4191 16 1 7.8915 6.5520 -0.3040 17 1 7.9345 7.0352 -2.6803 18 1 7.0417 8.6690 -1.1269 19 6 1.6286 7.3353 0.4102 20 6 0.6396 7.3843 1.5766 21 6 2.6251 8.4891 0.5384 22 6 2.2605 -1.3051 -0.0006 23 6 1.4418 -2.5935 -0.1047 24 6 2.1035 -2.2119 1.2218 25 1 -0.3633 0.4472 -0.9252 26 1 -0.3634 -1.0248 0.0755 27 1 -0.3634 0.5778 0.8499 28 1 3.2497 1.1531 -0.0699 29 1 3.0856 3.5792 0.2384 30 1 0.7383 4.8322 1.1857 31 1 0.7820 4.9895 -0.5868 32 1 3.0761 5.5315 -1.5135 33 1 5.7570 5.8523 -3.4723 34 1 1.0857 7.4263 -0.5305 35 1 1.1825 7.2933 2.5174 36 1 0.1024 8.3326 1.5578 37 1 -0.0704 6.5622 1.4858 38 1 3.3300 8.4544 -0.2923 39 1 2.0877 9.4372 0.5189 40 1 3.1676 8.3978 1.4793 41 1 3.2335 -1.2860 -0.4915 42 1 0.3582 -2.4970 -0.1733 43 1 1.8763 -3.4221 -0.6639 44 1 2.9732 -2.7897 1.5347 45 1 1.4557 -1.8644 2.0264 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496533517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:09 Heat of formation + Delta-G solvation = -15.962657 kcal Electronic energy + Delta-G solvation = -22126.939793 eV Core-core repulsion = 18951.724964 eV Total energy + Delta-G solvation = -3175.214829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.88533 -39.13571 -38.47819 -35.27120 -34.90822 -34.06208 -32.18865 -30.02536 -28.42353 -27.44572 -25.86664 -24.73948 -23.25507 -23.11220 -21.50125 -20.73636 -19.59610 -19.01572 -17.85462 -17.29720 -16.90817 -16.33396 -16.16801 -15.64240 -15.61886 -15.11705 -14.91184 -14.68596 -14.30576 -14.03834 -13.81697 -13.58509 -13.40689 -12.98719 -12.90061 -12.80647 -12.70437 -12.49147 -12.45318 -12.27258 -12.09875 -12.02522 -11.74872 -11.73716 -11.43778 -11.31860 -11.28062 -10.84484 -10.54173 -10.13739 -9.66741 -8.95399 -7.86783 -5.14138 0.38284 1.50935 1.51837 1.57419 2.31253 2.40221 2.60563 3.00586 3.45979 3.61731 3.87533 3.90439 3.94135 3.95944 4.15379 4.17460 4.28243 4.31373 4.34564 4.46909 4.64022 4.66756 4.77837 4.82449 4.86296 4.92875 4.98658 5.00849 5.07334 5.11960 5.15134 5.15874 5.26855 5.28008 5.34571 5.53603 5.55924 5.58888 5.64325 5.66015 5.78005 6.33002 6.69604 7.33311 7.40838 8.12410 8.37809 9.35986 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015124 B = 0.004209 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.927518 B = 6651.448365 C = 8109.391279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.004 3.996 3 C -0.242 4.242 4 C 0.536 3.464 5 O -0.582 6.582 6 N -0.711 5.711 7 C 0.125 3.875 8 C 0.173 3.827 9 H 0.055 0.945 10 N -0.727 5.727 11 C -0.217 4.217 12 H 0.079 0.921 13 C -0.071 4.071 14 N -0.968 5.968 15 Si 0.960 3.040 16 H -0.279 1.279 17 H -0.303 1.303 18 H -0.282 1.282 19 C -0.106 4.106 20 C -0.140 4.140 21 C -0.135 4.135 22 C -0.151 4.151 23 C -0.167 4.167 24 C -0.156 4.156 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.135 0.865 29 H 0.408 0.592 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.372 0.628 33 H 0.247 0.753 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.450 -12.089 9.377 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.002 3.998 3 C -0.263 4.263 4 C 0.327 3.673 5 O -0.466 6.466 6 N -0.361 5.361 7 C 0.000 4.000 8 C 0.064 3.936 9 H 0.073 0.927 10 N -0.367 5.367 11 C -0.349 4.349 12 H 0.097 0.903 13 C -0.264 4.264 14 N -0.620 5.620 15 Si 0.790 3.210 16 H -0.205 1.205 17 H -0.230 1.230 18 H -0.209 1.209 19 C -0.128 4.128 20 C -0.198 4.198 21 C -0.192 4.192 22 C -0.170 4.170 23 C -0.203 4.203 24 C -0.193 4.193 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.244 0.756 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.203 0.797 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.124 -11.960 9.450 17.273 hybrid contribution 1.547 0.736 -0.812 1.896 sum -6.578 -11.223 8.638 15.616 Atomic orbital electron populations 1.21033 0.90987 1.02134 1.02868 1.21988 0.96146 0.93066 0.88599 1.22339 1.00794 0.91287 1.11859 1.18914 0.87138 0.85140 0.76086 1.90703 1.14780 1.88060 1.53033 1.45907 1.11119 1.05823 1.73216 1.21573 0.94499 0.82844 1.01092 1.20675 0.89438 0.91928 0.91544 0.92693 1.42564 1.12456 1.68421 1.13263 1.19445 0.90160 1.27275 0.97982 0.90329 1.25367 1.01570 1.03089 0.96327 1.69812 1.36385 1.51284 1.04480 0.85414 0.81087 0.78425 0.76052 1.20481 1.23008 1.20882 1.21624 0.96419 0.96247 0.98491 1.21848 0.98438 1.01953 0.97554 1.21732 0.99017 0.96919 1.01521 1.21299 1.01016 0.88491 1.06146 1.23254 1.00049 0.96647 1.00371 1.23075 1.03923 1.00993 0.91262 0.91797 0.90178 0.91240 0.84746 0.75599 0.90250 0.93614 0.79655 0.94441 0.93244 0.92221 0.92025 0.92392 0.93263 0.93011 0.93414 0.86163 0.87588 0.86755 0.86651 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.85 8.22 71.23 0.59 -2.26 16 2 C 0.00 0.10 5.81 -17.62 -0.10 0.00 16 3 C -0.24 -7.03 9.67 23.43 0.23 -6.80 16 4 C 0.54 18.72 7.72 86.57 0.67 19.38 16 5 O -0.58 -22.57 13.10 -4.09 -0.05 -22.63 16 6 N -0.71 -24.85 5.38 -466.71 -2.51 -27.36 16 7 C 0.12 4.32 4.73 86.38 0.41 4.73 16 8 C 0.17 6.35 2.18 44.99 0.10 6.45 16 9 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 10 N -0.73 -33.62 4.44 -322.94 -1.43 -35.06 16 11 C -0.22 -11.01 7.57 84.03 0.64 -10.37 16 12 H 0.08 3.84 7.40 -2.91 -0.02 3.82 16 13 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 14 N -0.97 -57.24 13.06 21.65 0.28 -56.95 16 15 Si 0.96 44.60 29.55 68.60 2.03 46.63 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 C -0.11 -3.55 2.69 -10.79 -0.03 -3.58 16 20 C -0.14 -3.64 8.84 71.98 0.64 -3.01 16 21 C -0.13 -4.71 8.26 71.98 0.59 -4.11 16 22 C -0.15 -2.82 6.01 -11.54 -0.07 -2.89 16 23 C -0.17 -2.32 9.86 30.62 0.30 -2.02 16 24 C -0.16 -2.24 10.24 30.62 0.31 -1.92 16 25 H 0.06 1.83 7.58 -2.39 -0.02 1.81 16 26 H 0.08 1.49 5.44 -2.39 -0.01 1.48 16 27 H 0.07 1.97 6.84 -2.38 -0.02 1.96 16 28 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 29 H 0.41 14.54 8.12 -92.71 -0.75 13.79 16 30 H 0.08 2.52 6.71 -2.38 -0.02 2.51 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.37 19.24 7.80 -92.71 -0.72 18.52 16 33 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 38 H 0.05 2.09 6.01 -2.39 -0.01 2.08 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.11 1.42 5.90 -2.38 -0.01 1.40 16 43 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -61.92 358.35 2.55 -59.36 By element: Atomic # 1 Polarization: 46.32 SS G_CDS: -0.49 Total: 45.82 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 4.74 Total: -9.82 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -3.66 Total: -119.37 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -61.92 2.55 -59.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496533517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.401 kcal (2) G-P(sol) polarization free energy of solvation -61.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds