Wall clock time and date at job start Tue Mar 31 2020 02:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.50705 * 120.00220 * 2 1 4 4 C 1.32995 * 120.00298 * 179.97438 * 2 1 3 5 5 C 1.47100 * 119.99525 * 352.84152 * 4 2 1 6 6 O 1.21613 * 120.00473 * 354.00691 * 5 4 2 7 7 N 1.34784 * 120.00100 * 174.00823 * 5 4 2 8 8 C 1.46493 * 120.00298 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47458 * 34.99555 * 8 7 5 10 10 C 1.53002 * 109.46922 * 274.99800 * 8 7 5 11 11 C 1.53001 * 109.47183 * 179.97438 * 10 8 7 12 12 C 1.53008 * 109.46834 * 59.99874 * 11 10 8 13 13 C 1.52988 * 109.47442 * 300.00090 * 12 11 10 14 14 C 1.53001 * 109.47474 * 154.99738 * 8 7 5 15 15 H 1.09003 * 109.46557 * 59.99879 * 14 8 7 16 16 C 1.53002 * 109.46911 * 300.00299 * 14 8 7 17 17 N 1.46500 * 109.46634 * 174.99844 * 16 14 8 18 18 C 1.36944 * 119.99648 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99712 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99970 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00076 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 120.00149 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46950 * 89.99260 * 22 20 18 24 24 H 1.48497 * 109.47278 * 209.99670 * 22 20 18 25 25 H 1.48498 * 109.46848 * 329.99852 * 22 20 18 26 26 H 1.09001 * 109.47307 * 264.39679 * 1 2 3 27 27 H 1.09007 * 109.46956 * 24.39457 * 1 2 3 28 28 H 1.08997 * 109.47328 * 144.39297 * 1 2 3 29 29 H 1.08997 * 109.47173 * 240.00074 * 3 2 1 30 30 H 1.09004 * 109.46655 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.47221 * 119.99615 * 3 2 1 32 32 H 1.08001 * 120.00368 * 172.84113 * 4 2 1 33 33 H 0.96999 * 119.99415 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.47440 * 299.99789 * 10 8 7 35 35 H 1.08999 * 109.47218 * 60.00460 * 10 8 7 36 36 H 1.09003 * 109.47496 * 300.00553 * 11 10 8 37 37 H 1.09000 * 109.47686 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.46975 * 179.97438 * 12 11 10 39 39 H 1.09003 * 109.46524 * 60.00084 * 12 11 10 40 40 H 1.08994 * 109.47714 * 179.97438 * 13 12 11 41 41 H 1.08998 * 109.47340 * 300.00027 * 13 12 11 42 42 H 1.08998 * 109.46807 * 294.99415 * 16 14 8 43 43 H 1.08997 * 109.47416 * 54.99580 * 16 14 8 44 44 H 0.97001 * 120.00730 * 359.97438 * 17 16 14 45 45 H 0.96997 * 119.99978 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4450 -2.4206 0.1598 6 8 0.2528 -2.4125 0.3998 7 7 2.1003 -3.5923 0.0399 8 6 1.3762 -4.8560 0.1980 9 1 0.3677 -4.7494 -0.2016 10 6 1.3009 -5.2183 1.6826 11 6 0.5442 -6.5377 1.8478 12 6 1.2784 -7.6452 1.0892 13 6 1.3538 -7.2830 -0.3953 14 6 2.1110 -5.9632 -0.5605 15 1 3.1194 -6.0697 -0.1608 16 6 2.1864 -5.6008 -2.0451 17 7 2.9920 -6.6001 -2.7512 18 6 3.1995 -6.4836 -4.0998 19 1 2.7696 -5.6548 -4.6426 20 6 3.9632 -7.4301 -4.7688 21 7 4.1623 -7.3184 -6.0651 22 14 4.7074 -8.8633 -3.8298 23 1 3.7524 -10.0005 -3.8241 24 1 5.9719 -9.2819 -4.4860 25 1 4.9891 -8.4466 -2.4325 26 1 -0.3634 -0.1003 1.0228 27 1 -0.3633 0.9360 -0.4245 28 1 -0.3634 -0.8355 -0.5983 29 1 2.8872 1.3628 -0.8900 30 1 1.5521 2.1336 -0.0005 31 1 2.8872 1.3629 0.8900 32 1 3.2457 -1.1554 -0.1160 33 1 3.0511 -3.5988 -0.1519 34 1 2.3093 -5.3249 2.0823 35 1 0.7774 -4.4296 2.2229 36 1 -0.4643 -6.4308 1.4482 37 1 0.4908 -6.7961 2.9054 38 1 0.7396 -8.5853 1.2073 39 1 2.2869 -7.7521 1.4888 40 1 1.8773 -8.0716 -0.9357 41 1 0.3454 -7.1760 -0.7949 42 1 1.1810 -5.5814 -2.4658 43 1 2.6460 -4.6188 -2.1565 44 1 3.3784 -7.3444 -2.2636 45 1 4.6956 -7.9800 -6.5326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498468081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:10 Heat of formation + Delta-G solvation = -54.470596 kcal Electronic energy + Delta-G solvation = -22519.806543 eV Core-core repulsion = 19342.921884 eV Total energy + Delta-G solvation = -3176.884659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.25283 -39.58268 -36.66436 -36.29850 -35.10820 -33.85182 -31.63225 -30.92115 -28.69278 -28.47354 -27.01107 -24.46494 -23.67173 -22.11620 -21.73062 -21.06070 -19.92970 -19.34414 -17.86946 -17.14435 -16.61955 -16.18632 -15.96349 -15.55856 -15.43035 -15.07735 -14.84346 -14.82436 -14.64840 -14.55950 -14.08280 -13.73343 -13.68760 -13.30671 -13.23374 -13.03022 -12.78994 -12.70157 -12.61996 -12.38214 -12.17424 -12.13833 -11.94878 -11.85176 -11.48879 -11.34134 -11.14911 -10.98696 -10.53254 -10.16014 -9.74148 -9.30625 -8.03731 -5.37826 0.44462 1.36940 1.41528 1.48820 2.30354 2.38038 2.47836 3.27543 3.41587 3.73699 3.83842 3.85861 3.95783 3.99220 4.22701 4.29431 4.31519 4.43226 4.45176 4.52026 4.55179 4.60107 4.70818 4.80454 4.83942 4.86541 4.91876 5.02847 5.05407 5.08784 5.15291 5.19538 5.23384 5.27471 5.30088 5.38964 5.50848 5.55989 5.64386 5.68758 5.73680 6.19836 6.66535 7.06715 7.34361 7.81452 8.03152 9.18093 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014849 B = 0.004680 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.186175 B = 5981.812014 C = 7460.711341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.030 4.030 3 C -0.124 4.124 4 C -0.253 4.253 5 C 0.538 3.462 6 O -0.578 6.578 7 N -0.716 5.716 8 C 0.162 3.838 9 H 0.063 0.937 10 C -0.116 4.116 11 C -0.112 4.112 12 C -0.114 4.114 13 C -0.111 4.111 14 C -0.090 4.090 15 H 0.087 0.913 16 C 0.163 3.837 17 N -0.752 5.752 18 C -0.238 4.238 19 H 0.050 0.950 20 C -0.063 4.063 21 N -0.985 5.985 22 Si 0.957 3.043 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.247 1.247 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.147 0.853 33 H 0.409 0.591 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.008 0.992 43 H 0.026 0.974 44 H 0.368 0.632 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 10.475 20.832 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.032 4.032 3 C -0.180 4.180 4 C -0.274 4.274 5 C 0.330 3.670 6 O -0.461 6.461 7 N -0.366 5.366 8 C 0.056 3.944 9 H 0.082 0.918 10 C -0.155 4.155 11 C -0.150 4.150 12 C -0.151 4.151 13 C -0.149 4.149 14 C -0.109 4.109 15 H 0.105 0.895 16 C 0.037 3.963 17 N -0.398 5.398 18 C -0.369 4.369 19 H 0.068 0.932 20 C -0.254 4.254 21 N -0.635 5.635 22 Si 0.783 3.217 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.171 1.171 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.165 0.835 33 H 0.245 0.755 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.044 0.956 44 H 0.202 0.798 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.390 10.575 20.799 23.742 hybrid contribution 0.841 -0.946 -0.593 1.398 sum -3.549 9.629 20.206 22.662 Atomic orbital electron populations 1.21120 0.91835 1.02296 1.02708 1.22873 0.96568 0.95697 0.88021 1.21068 1.00502 0.92575 1.03880 1.22480 1.01356 0.91167 1.12352 1.19014 0.86692 0.85229 0.76113 1.90719 1.16466 1.88178 1.50753 1.45986 1.13330 1.05214 1.72033 1.20797 0.95526 0.82053 0.95975 0.91848 1.21811 1.01561 0.97772 0.94354 1.21481 0.98784 0.93610 1.01093 1.21551 1.01489 0.98684 0.93418 1.21523 0.99992 0.95651 0.97710 1.21516 1.00488 0.95323 0.93551 0.89506 1.20734 0.93018 0.91582 0.90998 1.42644 1.62407 1.29775 1.05003 1.19005 1.25659 1.07597 0.84626 0.93239 1.25536 1.01376 1.02092 0.96386 1.69896 1.45744 1.38649 1.09247 0.85389 0.77656 0.79456 0.79189 1.20363 1.22128 1.17089 0.91009 0.90688 0.92066 0.89711 0.90059 0.89208 0.83543 0.75492 0.90617 0.92592 0.92471 0.89990 0.90709 0.90996 0.92425 0.92509 0.97440 0.95628 0.79802 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 8.43 71.23 0.60 -2.09 16 2 C -0.03 -0.58 6.11 -17.62 -0.11 -0.69 16 3 C -0.12 -1.48 10.06 71.24 0.72 -0.77 16 4 C -0.25 -5.49 9.67 23.43 0.23 -5.27 16 5 C 0.54 14.92 7.58 86.57 0.66 15.57 16 6 O -0.58 -19.39 12.94 -4.07 -0.05 -19.44 16 7 N -0.72 -18.11 4.30 -446.13 -1.92 -20.02 16 8 C 0.16 4.29 1.90 44.99 0.09 4.37 16 9 H 0.06 2.01 7.58 -2.38 -0.02 2.00 16 10 C -0.12 -2.54 5.49 30.60 0.17 -2.37 16 11 C -0.11 -2.16 5.92 30.60 0.18 -1.98 16 12 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 13 C -0.11 -3.00 5.08 30.61 0.16 -2.85 16 14 C -0.09 -2.56 1.80 -10.78 -0.02 -2.58 16 15 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 16 C 0.16 6.32 5.57 86.38 0.48 6.80 16 17 N -0.75 -35.14 5.13 -343.45 -1.76 -36.90 16 18 C -0.24 -13.82 10.47 84.03 0.88 -12.94 16 19 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 20 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 21 N -0.98 -63.71 13.97 21.65 0.30 -63.41 16 22 Si 0.96 45.02 27.74 68.60 1.90 46.92 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.25 -10.25 6.52 99.48 0.65 -9.60 16 26 H 0.07 1.63 8.04 -2.39 -0.02 1.61 16 27 H 0.07 1.26 7.94 -2.38 -0.02 1.24 16 28 H 0.06 1.73 6.14 -2.39 -0.01 1.71 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.78 7.87 -2.39 -0.02 0.76 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 33 H 0.41 8.95 8.37 -92.71 -0.78 8.17 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.73 7.18 -2.39 -0.02 1.71 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.03 1.01 7.30 -2.39 -0.02 0.99 16 44 H 0.37 16.07 4.71 -92.71 -0.44 15.64 16 45 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -72.44 353.46 2.84 -69.61 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.31 Total: 33.40 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 4.67 Total: -10.16 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -3.38 Total: -120.33 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Total: -72.44 2.84 -69.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498468081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.138 kcal (2) G-P(sol) polarization free energy of solvation -72.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds