Wall clock time and date at job start Tue Mar 31 2020 02:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50696 * 119.99968 * 2 1 4 4 C 1.32990 * 119.99851 * 180.02562 * 2 1 3 5 5 C 1.47108 * 120.00232 * 359.97438 * 4 2 1 6 6 O 1.21608 * 119.99742 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00056 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99972 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46700 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.50244 * 299.93390 * 9 8 7 11 11 C 1.53045 * 109.49171 * 179.83628 * 9 8 7 12 12 C 1.53042 * 109.53681 * 178.68485 * 11 9 8 13 13 C 1.53197 * 109.31383 * 61.36705 * 12 11 9 14 14 N 1.46929 * 108.77280 * 305.36649 * 13 12 11 15 15 C 1.36935 * 120.62675 * 233.62935 * 14 13 12 16 16 H 1.08003 * 120.00258 * 27.66413 * 15 14 13 17 17 C 1.38812 * 119.99784 * 207.66080 * 15 14 13 18 18 N 1.31617 * 120.00009 * 17.37828 * 17 15 14 19 19 Si 1.86805 * 120.00082 * 197.37125 * 17 15 14 20 20 H 1.48496 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46963 * 120.00353 * 19 17 15 22 22 H 1.48500 * 109.46942 * 240.00282 * 19 17 15 23 23 C 1.46921 * 118.74010 * 53.60409 * 14 13 12 24 24 H 1.09003 * 109.46689 * 239.99717 * 1 2 3 25 25 H 1.08995 * 109.47394 * 120.00204 * 1 2 3 26 26 H 1.08997 * 109.47160 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47166 * 90.00497 * 3 2 1 28 28 H 1.08997 * 109.46900 * 210.00162 * 3 2 1 29 29 H 1.08997 * 109.47037 * 330.00346 * 3 2 1 30 30 H 1.08004 * 120.00363 * 179.97438 * 4 2 1 31 31 H 0.97008 * 119.99957 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47129 * 299.99607 * 8 7 5 33 33 H 1.09002 * 109.46979 * 60.00023 * 8 7 5 34 34 H 1.09001 * 109.47264 * 60.00124 * 10 9 8 35 35 H 1.09000 * 109.47091 * 180.02562 * 10 9 8 36 36 H 1.09009 * 109.46923 * 300.00390 * 10 9 8 37 37 H 1.08996 * 109.46260 * 298.70290 * 11 9 8 38 38 H 1.08999 * 109.46310 * 58.66428 * 11 9 8 39 39 H 1.08993 * 109.49761 * 301.41526 * 12 11 9 40 40 H 1.09004 * 109.49602 * 181.31703 * 12 11 9 41 41 H 1.09000 * 109.58787 * 185.57736 * 13 12 11 42 42 H 1.09002 * 109.70249 * 65.21784 * 13 12 11 43 43 H 0.97005 * 120.00216 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.59074 * 186.60073 * 23 14 13 45 45 H 1.09000 * 109.58552 * 66.18274 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4364 -2.4257 -0.0005 6 8 0.2204 -2.4257 -0.0005 7 7 2.1103 -3.5929 -0.0005 8 6 1.3778 -4.8617 -0.0011 9 6 2.3721 -6.0245 -0.0016 10 6 3.2510 -5.9445 -1.2514 11 6 1.6075 -7.3503 0.0019 12 6 2.6008 -8.5141 -0.0317 13 6 3.4844 -8.4623 1.2187 14 7 4.1114 -7.1360 1.3000 15 6 5.4698 -7.0127 1.4205 16 1 6.1189 -7.7802 1.0253 17 6 6.0127 -5.9012 2.0504 18 7 5.2579 -5.1480 2.8220 19 14 7.8145 -5.4746 1.8033 20 1 8.4392 -6.4711 0.8967 21 1 7.9248 -4.1213 1.2020 22 1 8.5116 -5.4921 3.1144 23 6 3.2532 -5.9446 1.2490 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3634 -0.5138 -0.8899 26 1 -0.3633 1.0276 0.0005 27 1 2.4423 1.6197 1.0277 28 1 3.2129 1.1747 -0.5138 29 1 1.6714 2.0647 -0.5138 30 1 3.2520 -1.1518 -0.0009 31 1 3.0804 -3.5929 -0.0009 32 1 0.7509 -4.9197 0.8887 33 1 0.7515 -4.9192 -0.8913 34 1 3.7962 -5.0006 -1.2523 35 1 3.9589 -6.7734 -1.2514 36 1 2.6238 -6.0026 -2.1410 37 1 1.0004 -7.4170 0.9047 38 1 0.9611 -7.3991 -0.8744 39 1 3.2248 -8.4342 -0.9217 40 1 2.0552 -9.4575 -0.0528 41 1 4.2571 -9.2283 1.1521 42 1 2.8755 -8.6336 2.1064 43 1 5.6371 -4.3711 3.2620 44 1 3.8731 -5.0493 1.2026 45 1 2.6234 -5.9096 2.1380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500472420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:50 Heat of formation + Delta-G solvation = -17.672474 kcal Electronic energy + Delta-G solvation = -23126.046760 eV Core-core repulsion = 19950.757788 eV Total energy + Delta-G solvation = -3175.288973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.68789 -38.38209 -35.55438 -34.49736 -33.17160 -31.38881 -29.89867 -28.21211 -27.67367 -26.44226 -25.41928 -25.05259 -22.25088 -21.03827 -20.27679 -18.76503 -17.74996 -16.82786 -16.51577 -15.45737 -15.09927 -14.72095 -14.27580 -14.06848 -13.91666 -13.74684 -13.61949 -13.31753 -13.11978 -12.71875 -12.43655 -12.35073 -12.19384 -12.10583 -11.70840 -11.56481 -11.48862 -11.29756 -10.97688 -10.85649 -10.64682 -10.38507 -10.16495 -10.08587 -9.82134 -9.59955 -9.35999 -9.26685 -9.10853 -8.52543 -8.45604 -6.67975 -5.81702 -3.23508 1.53838 3.32479 3.41925 3.43650 3.60281 3.69624 4.46062 4.83709 4.88930 5.16305 5.29927 5.30925 5.42981 5.46911 5.51264 5.53551 5.59991 5.69523 5.77559 5.80198 5.93429 5.98903 6.07507 6.12577 6.16717 6.21037 6.29534 6.42537 6.44994 6.55717 6.57155 6.61309 6.65735 6.81330 6.86996 6.94378 6.98507 7.05950 7.30527 7.59136 7.76754 7.98014 8.41269 8.63340 9.18355 9.81973 10.39444 11.26096 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.005692 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.679701 B = 4918.093916 C = 6428.435677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.045 4.045 3 C -0.125 4.125 4 C -0.227 4.227 5 C 0.542 3.458 6 O -0.555 6.555 7 N -0.714 5.714 8 C 0.138 3.862 9 C -0.103 4.103 10 C -0.125 4.125 11 C -0.095 4.095 12 C -0.135 4.135 13 C 0.143 3.857 14 N -0.589 5.589 15 C -0.248 4.248 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.897 3.103 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.291 1.291 23 C 0.185 3.815 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.405 0.595 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.016 0.984 43 H 0.253 0.747 44 H 0.089 0.911 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 6.272 -7.114 11.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.047 4.047 3 C -0.181 4.181 4 C -0.247 4.247 5 C 0.331 3.669 6 O -0.437 6.437 7 N -0.365 5.365 8 C 0.014 3.986 9 C -0.105 4.105 10 C -0.183 4.183 11 C -0.133 4.133 12 C -0.174 4.174 13 C 0.017 3.983 14 N -0.311 5.311 15 C -0.378 4.378 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.546 5.546 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.059 3.941 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.143 0.857 31 H 0.242 0.758 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.107 0.893 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -7.096 6.362 -7.007 11.829 hybrid contribution 1.532 0.223 0.046 1.549 sum -5.564 6.585 -6.961 11.081 Atomic orbital electron populations 1.20997 0.90940 1.00523 1.04363 1.22491 0.96799 0.94374 0.91050 1.20990 0.99995 0.94343 1.02793 1.22470 1.00231 0.92194 1.09851 1.18508 0.87311 0.84453 0.76610 1.90724 1.13770 1.87948 1.51247 1.45992 1.10910 1.05534 1.74034 1.21328 0.94131 0.82176 1.01003 1.21532 0.95983 0.92985 1.00003 1.21716 0.99155 1.02233 0.95155 1.21345 0.97084 0.94417 1.00469 1.22044 0.98059 0.96469 1.00828 1.20929 0.94655 0.89018 0.93721 1.44004 1.03048 0.99233 1.84854 1.19217 0.81743 1.06509 1.30323 0.91695 1.25005 0.97433 1.00298 0.96875 1.70053 1.35174 1.18461 1.30902 0.86301 0.85389 0.78086 0.77512 1.20291 1.21602 1.21780 1.20794 0.91206 0.92031 0.90053 0.90039 0.90112 0.93397 0.90470 0.91224 0.91261 0.85745 0.75835 0.92035 0.92491 0.93663 0.91031 0.94590 0.92604 0.93435 0.91965 0.93238 0.92984 0.96582 0.93731 0.89317 0.96501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 8.33 36.01 0.30 -1.11 16 2 C -0.05 -0.56 6.11 -101.17 -0.62 -1.18 16 3 C -0.12 -1.13 9.98 36.00 0.36 -0.78 16 4 C -0.23 -3.20 9.63 -37.80 -0.36 -3.57 16 5 C 0.54 9.18 7.73 -12.66 -0.10 9.09 16 6 O -0.56 -10.52 13.07 5.27 0.07 -10.45 16 7 N -0.71 -12.07 4.99 -61.49 -0.31 -12.37 16 8 C 0.14 2.37 4.57 -4.04 -0.02 2.35 16 9 C -0.10 -1.84 0.53 -154.39 -0.08 -1.92 16 10 C -0.13 -2.16 7.82 37.16 0.29 -1.87 16 11 C -0.09 -1.57 4.71 -26.69 -0.13 -1.70 16 12 C -0.13 -2.27 5.74 -26.61 -0.15 -2.43 16 13 C 0.14 2.93 6.52 -3.71 -0.02 2.90 16 14 N -0.59 -14.06 2.43 -172.32 -0.42 -14.48 16 15 C -0.25 -6.52 9.58 -15.06 -0.14 -6.66 16 16 H 0.07 1.70 7.89 -52.48 -0.41 1.28 16 17 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 18 N -0.90 -25.09 11.19 55.49 0.62 -24.47 16 19 Si 0.90 20.93 29.59 -169.99 -5.03 15.90 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.19 4.16 3.73 -3.71 -0.01 4.14 16 24 H 0.08 1.17 7.22 -51.93 -0.37 0.79 16 25 H 0.08 1.12 7.22 -51.93 -0.37 0.74 16 26 H 0.05 0.47 7.94 -51.93 -0.41 0.06 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 29 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 30 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 31 H 0.41 6.84 6.20 -40.82 -0.25 6.59 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.78 6.87 -51.93 -0.36 0.42 16 35 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 36 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.06 6.34 -51.93 -0.33 0.73 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.25 6.83 8.31 -40.82 -0.34 6.50 16 44 H 0.09 2.17 4.94 -51.93 -0.26 1.91 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -29.18 346.75 -8.31 -37.49 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.69 Total: 5.91 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.78 Total: -2.76 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.11 Total: -51.32 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.18 -8.31 -37.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500472420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.822 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds