Wall clock time and date at job start Tue Mar 31 2020 02:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50696 * 119.99968 * 2 1 4 4 C 1.32990 * 119.99851 * 180.02562 * 2 1 3 5 5 C 1.47108 * 120.00232 * 359.97438 * 4 2 1 6 6 O 1.21608 * 119.99742 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00056 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99972 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46700 * 179.97438 * 8 7 5 10 10 C 1.52995 * 109.50244 * 299.93390 * 9 8 7 11 11 C 1.53045 * 109.49171 * 179.83628 * 9 8 7 12 12 C 1.53042 * 109.53681 * 178.68485 * 11 9 8 13 13 C 1.53197 * 109.31383 * 61.36705 * 12 11 9 14 14 N 1.46929 * 108.77280 * 305.36649 * 13 12 11 15 15 C 1.36935 * 120.62675 * 233.62935 * 14 13 12 16 16 H 1.08003 * 120.00258 * 27.66413 * 15 14 13 17 17 C 1.38812 * 119.99784 * 207.66080 * 15 14 13 18 18 N 1.31617 * 120.00009 * 17.37828 * 17 15 14 19 19 Si 1.86805 * 120.00082 * 197.37125 * 17 15 14 20 20 H 1.48496 * 109.47010 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46963 * 120.00353 * 19 17 15 22 22 H 1.48500 * 109.46942 * 240.00282 * 19 17 15 23 23 C 1.46921 * 118.74010 * 53.60409 * 14 13 12 24 24 H 1.09003 * 109.46689 * 239.99717 * 1 2 3 25 25 H 1.08995 * 109.47394 * 120.00204 * 1 2 3 26 26 H 1.08997 * 109.47160 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47166 * 90.00497 * 3 2 1 28 28 H 1.08997 * 109.46900 * 210.00162 * 3 2 1 29 29 H 1.08997 * 109.47037 * 330.00346 * 3 2 1 30 30 H 1.08004 * 120.00363 * 179.97438 * 4 2 1 31 31 H 0.97008 * 119.99957 * 359.97438 * 7 5 4 32 32 H 1.08998 * 109.47129 * 299.99607 * 8 7 5 33 33 H 1.09002 * 109.46979 * 60.00023 * 8 7 5 34 34 H 1.09001 * 109.47264 * 60.00124 * 10 9 8 35 35 H 1.09000 * 109.47091 * 180.02562 * 10 9 8 36 36 H 1.09009 * 109.46923 * 300.00390 * 10 9 8 37 37 H 1.08996 * 109.46260 * 298.70290 * 11 9 8 38 38 H 1.08999 * 109.46310 * 58.66428 * 11 9 8 39 39 H 1.08993 * 109.49761 * 301.41526 * 12 11 9 40 40 H 1.09004 * 109.49602 * 181.31703 * 12 11 9 41 41 H 1.09000 * 109.58787 * 185.57736 * 13 12 11 42 42 H 1.09002 * 109.70249 * 65.21784 * 13 12 11 43 43 H 0.97005 * 120.00216 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.59074 * 186.60073 * 23 14 13 45 45 H 1.09000 * 109.58552 * 66.18274 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4364 -2.4257 -0.0005 6 8 0.2204 -2.4257 -0.0005 7 7 2.1103 -3.5929 -0.0005 8 6 1.3778 -4.8617 -0.0011 9 6 2.3721 -6.0245 -0.0016 10 6 3.2510 -5.9445 -1.2514 11 6 1.6075 -7.3503 0.0019 12 6 2.6008 -8.5141 -0.0317 13 6 3.4844 -8.4623 1.2187 14 7 4.1114 -7.1360 1.3000 15 6 5.4698 -7.0127 1.4205 16 1 6.1189 -7.7802 1.0253 17 6 6.0127 -5.9012 2.0504 18 7 5.2579 -5.1480 2.8220 19 14 7.8145 -5.4746 1.8033 20 1 8.4392 -6.4711 0.8967 21 1 7.9248 -4.1213 1.2020 22 1 8.5116 -5.4921 3.1144 23 6 3.2532 -5.9446 1.2490 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3634 -0.5138 -0.8899 26 1 -0.3633 1.0276 0.0005 27 1 2.4423 1.6197 1.0277 28 1 3.2129 1.1747 -0.5138 29 1 1.6714 2.0647 -0.5138 30 1 3.2520 -1.1518 -0.0009 31 1 3.0804 -3.5929 -0.0009 32 1 0.7509 -4.9197 0.8887 33 1 0.7515 -4.9192 -0.8913 34 1 3.7962 -5.0006 -1.2523 35 1 3.9589 -6.7734 -1.2514 36 1 2.6238 -6.0026 -2.1410 37 1 1.0004 -7.4170 0.9047 38 1 0.9611 -7.3991 -0.8744 39 1 3.2248 -8.4342 -0.9217 40 1 2.0552 -9.4575 -0.0528 41 1 4.2571 -9.2283 1.1521 42 1 2.8755 -8.6336 2.1064 43 1 5.6371 -4.3711 3.2620 44 1 3.8731 -5.0493 1.2026 45 1 2.6234 -5.9096 2.1380 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500472420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:49 Heat of formation + Delta-G solvation = -33.886138 kcal Electronic energy + Delta-G solvation = -23126.749837 eV Core-core repulsion = 19950.757788 eV Total energy + Delta-G solvation = -3175.992050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05858 -39.86939 -36.75901 -35.92704 -34.86166 -32.99360 -31.63818 -29.29523 -28.60655 -27.92797 -27.24130 -26.49537 -23.92876 -22.50228 -21.67509 -20.06549 -19.22777 -18.51523 -17.90813 -16.97125 -16.52226 -16.28964 -15.77205 -15.44826 -15.33587 -15.12247 -14.84521 -14.71312 -14.56837 -14.25149 -13.78612 -13.73167 -13.31647 -13.25812 -13.04611 -12.99718 -12.72621 -12.65486 -12.58908 -12.40597 -12.26873 -12.10887 -11.84311 -11.72208 -11.40791 -11.17584 -10.96732 -10.57261 -10.51183 -10.26395 -9.76129 -8.62445 -7.83138 -5.27961 0.44137 1.46331 1.50039 1.59234 2.32932 2.42369 2.53373 3.29408 3.61742 3.83531 3.94231 3.96147 4.04740 4.04951 4.30678 4.37072 4.52462 4.56102 4.57988 4.70380 4.73502 4.75154 4.81200 4.83218 4.92300 4.99576 5.03521 5.05452 5.11536 5.17238 5.18374 5.30671 5.34451 5.41609 5.48642 5.53518 5.59534 5.64165 5.65831 5.73556 5.79083 6.42441 6.63955 7.18764 7.30547 7.89924 8.42611 9.22279 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.005692 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.679701 B = 4918.093916 C = 6428.435677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.027 4.027 3 C -0.123 4.123 4 C -0.255 4.255 5 C 0.535 3.465 6 O -0.582 6.582 7 N -0.716 5.716 8 C 0.145 3.855 9 C -0.091 4.091 10 C -0.117 4.117 11 C -0.095 4.095 12 C -0.123 4.123 13 C 0.136 3.864 14 N -0.605 5.605 15 C -0.255 4.255 16 H 0.064 0.936 17 C -0.045 4.045 18 N -0.932 5.932 19 Si 0.958 3.042 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.298 1.298 23 C 0.198 3.802 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.405 0.595 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.006 0.994 43 H 0.249 0.751 44 H 0.066 0.934 45 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 6.919 -8.880 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.029 4.029 3 C -0.180 4.180 4 C -0.276 4.276 5 C 0.327 3.673 6 O -0.465 6.465 7 N -0.366 5.366 8 C 0.020 3.980 9 C -0.093 4.093 10 C -0.175 4.175 11 C -0.133 4.133 12 C -0.162 4.162 13 C 0.010 3.990 14 N -0.328 5.328 15 C -0.386 4.386 16 H 0.082 0.918 17 C -0.240 4.240 18 N -0.578 5.578 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.225 1.225 23 C 0.072 3.928 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.154 0.846 31 H 0.241 0.759 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.024 0.976 43 H 0.058 0.942 44 H 0.084 0.916 45 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -7.125 6.983 -8.793 13.299 hybrid contribution 1.486 0.014 0.654 1.624 sum -5.639 6.997 -8.139 12.124 Atomic orbital electron populations 1.20971 0.91255 1.01960 1.02631 1.22900 0.96852 0.95399 0.87754 1.21083 1.00283 0.92694 1.03898 1.22481 1.00771 0.91421 1.12894 1.19023 0.87218 0.85264 0.75845 1.90704 1.14825 1.88357 1.52661 1.46030 1.10815 1.05661 1.74132 1.21223 0.93811 0.82168 1.00774 1.21340 0.95602 0.94406 0.97953 1.21625 0.98957 1.01320 0.95563 1.21375 0.97125 0.93130 1.01648 1.21919 0.97597 0.98099 0.98540 1.21108 0.95092 0.87429 0.95333 1.44252 1.02718 1.00811 1.84980 1.19487 0.83088 1.06409 1.29591 0.91803 1.25658 1.00954 1.00448 0.96951 1.70204 1.36687 1.18834 1.32082 0.85349 0.81078 0.77918 0.76965 1.19361 1.21288 1.22513 1.20543 0.90635 0.90885 0.90786 0.92155 0.91495 0.90294 0.89316 0.90316 0.89135 0.84605 0.75929 0.93712 0.91133 0.94198 0.92507 0.91938 0.93171 0.90349 0.91664 0.90163 0.92981 0.97578 0.94225 0.91607 1.00330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 8.33 71.24 0.59 -2.11 16 2 C -0.03 -0.63 6.11 -17.62 -0.11 -0.74 16 3 C -0.12 -1.88 9.98 71.23 0.71 -1.17 16 4 C -0.25 -7.12 9.63 23.43 0.23 -6.89 16 5 C 0.54 18.40 7.73 86.57 0.67 19.07 16 6 O -0.58 -22.42 13.07 -4.06 -0.05 -22.48 16 7 N -0.72 -24.61 4.99 -466.70 -2.33 -26.94 16 8 C 0.14 4.96 4.57 86.38 0.39 5.35 16 9 C -0.09 -3.22 0.53 -52.10 -0.03 -3.25 16 10 C -0.12 -3.89 7.82 71.98 0.56 -3.33 16 11 C -0.09 -2.96 4.71 30.62 0.14 -2.81 16 12 C -0.12 -3.88 5.74 30.67 0.18 -3.70 16 13 C 0.14 5.52 6.52 86.36 0.56 6.08 16 14 N -0.60 -29.30 2.43 -699.09 -1.70 -31.00 16 15 C -0.26 -13.57 9.58 84.03 0.81 -12.76 16 16 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 17 C -0.04 -2.40 4.91 84.86 0.42 -1.99 16 18 N -0.93 -53.38 11.19 21.65 0.24 -53.14 16 19 Si 0.96 43.44 29.59 68.60 2.03 45.47 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 23 C 0.20 9.12 3.73 86.36 0.32 9.44 16 24 H 0.06 1.74 7.22 -2.39 -0.02 1.72 16 25 H 0.07 1.82 7.22 -2.39 -0.02 1.81 16 26 H 0.08 1.38 7.94 -2.39 -0.02 1.36 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.11 8.07 -2.39 -0.02 1.09 16 29 H 0.09 1.04 8.05 -2.39 -0.02 1.02 16 30 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 31 H 0.40 14.02 6.20 -92.70 -0.58 13.44 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 34 H 0.04 1.34 6.87 -2.39 -0.02 1.33 16 35 H 0.06 2.06 5.97 -2.39 -0.01 2.05 16 36 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 2.06 6.34 -2.39 -0.02 2.04 16 40 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 44 H 0.07 3.34 4.94 -2.39 -0.01 3.32 16 45 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 Total: -1.00 -64.39 346.75 4.02 -60.37 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.39 Total: 26.51 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.45 Total: 1.20 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -3.79 Total: -111.08 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.48 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -64.39 4.02 -60.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500472420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.488 kcal (2) G-P(sol) polarization free energy of solvation -64.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds