Wall clock time and date at job start Tue Mar 31 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50697 * 119.99918 * 2 1 4 4 C 1.32995 * 119.99712 * 179.97438 * 2 1 3 5 5 C 1.47107 * 119.99602 * 179.97438 * 4 2 1 6 6 O 1.21608 * 120.00255 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99677 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99560 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46712 * 179.97438 * 8 7 5 10 10 H 1.08997 * 109.45105 * 294.99457 * 9 8 7 11 11 C 1.54871 * 109.44646 * 175.05215 * 9 8 7 12 12 C 1.47093 * 110.32053 * 168.69203 * 11 9 8 13 13 C 1.52573 * 114.32545 * 62.80040 * 12 11 9 14 14 C 1.50874 * 109.35870 * 274.99004 * 13 12 11 15 15 C 1.53952 * 110.09757 * 91.88734 * 14 13 12 16 16 N 1.44575 * 109.45191 * 54.94983 * 9 8 7 17 17 C 1.36940 * 118.64287 * 30.75985 * 16 9 8 18 18 H 1.08003 * 119.99964 * 27.74707 * 17 16 9 19 19 C 1.38806 * 120.00056 * 207.74526 * 17 16 9 20 20 N 1.31617 * 120.00016 * 14.62825 * 19 17 16 21 21 Si 1.86806 * 119.99816 * 194.62877 * 19 17 16 22 22 H 1.48496 * 109.47099 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47065 * 120.00053 * 21 19 17 24 24 H 1.48503 * 109.46814 * 239.99650 * 21 19 17 25 25 H 1.09002 * 109.46834 * 90.00505 * 1 2 3 26 26 H 1.08999 * 109.46947 * 329.99860 * 1 2 3 27 27 H 1.09000 * 109.47223 * 210.00071 * 1 2 3 28 28 H 1.08998 * 109.47535 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.46978 * 120.00117 * 3 2 1 30 30 H 1.08999 * 109.46881 * 239.99219 * 3 2 1 31 31 H 1.08000 * 120.00174 * 0.02562 * 4 2 1 32 32 H 0.96995 * 119.99886 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.47504 * 300.00079 * 8 7 5 34 34 H 1.09003 * 109.47339 * 59.99789 * 8 7 5 35 35 H 1.08992 * 109.33172 * 288.95416 * 11 9 8 36 36 H 1.09005 * 109.32655 * 48.60534 * 11 9 8 37 37 H 1.09001 * 108.51164 * 184.06054 * 12 11 9 38 38 H 1.09004 * 108.51293 * 301.70454 * 12 11 9 39 39 H 1.09003 * 109.48258 * 34.95575 * 13 12 11 40 40 H 1.09002 * 109.48670 * 155.01857 * 13 12 11 41 41 H 1.09008 * 109.36097 * 212.07503 * 14 13 12 42 42 H 1.09000 * 109.37208 * 331.68729 * 14 13 12 43 43 H 1.08995 * 108.94567 * 80.11795 * 15 14 13 44 44 H 1.09004 * 108.94276 * 198.74548 * 15 14 13 45 45 H 0.97003 * 119.99492 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 3.6430 -1.1518 -0.0001 6 8 4.2511 -0.0986 -0.0005 7 7 4.3169 -2.3191 -0.0001 8 6 5.7819 -2.3190 -0.0001 9 6 6.2918 -3.7615 0.0006 10 1 6.0034 -4.2481 0.9323 11 6 7.8354 -3.7628 -0.1254 12 6 8.3686 -5.1073 0.1420 13 6 7.9081 -6.1741 -0.8468 14 6 6.5714 -6.7190 -0.4081 15 6 5.4324 -5.9254 -1.0738 16 7 5.7142 -4.4769 -1.1151 17 6 5.4155 -3.7820 -2.2567 18 1 5.9750 -2.8936 -2.5100 19 6 4.3938 -4.2194 -3.0882 20 7 3.5301 -5.1132 -2.6553 21 14 4.2448 -3.5395 -4.8218 22 1 5.3303 -2.5553 -5.0625 23 1 4.3572 -4.6507 -5.8006 24 1 2.9278 -2.8719 -4.9800 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3634 -0.8900 0.5138 28 1 1.5522 2.1336 0.0005 29 1 2.8872 1.3628 0.8900 30 1 2.8872 1.3627 -0.8899 31 1 1.6319 -2.0871 0.0005 32 1 3.8318 -3.1590 0.0007 33 1 6.1452 -1.8051 -0.8900 34 1 6.1452 -1.8051 0.8899 35 1 8.1154 -3.4576 -1.1335 36 1 8.2566 -3.0607 0.5942 37 1 9.4573 -5.0591 0.1172 38 1 8.0595 -5.4096 1.1426 39 1 7.8133 -5.7333 -1.8392 40 1 8.6387 -6.9826 -0.8759 41 1 6.4969 -7.7680 -0.6952 42 1 6.4849 -6.6357 0.6753 43 1 5.2964 -6.2885 -2.0924 44 1 4.5116 -6.0916 -0.5146 45 1 2.8163 -5.4191 -3.2366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506569752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:37 Heat of formation + Delta-G solvation = -15.363189 kcal Electronic energy + Delta-G solvation = -23455.244059 eV Core-core repulsion = 20280.055225 eV Total energy + Delta-G solvation = -3175.188834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.20918 -38.07679 -35.28591 -34.21551 -33.40981 -31.69984 -30.66928 -28.17740 -27.50134 -26.52542 -25.38923 -23.45026 -22.27108 -20.30384 -19.72301 -19.17208 -18.23047 -16.48443 -16.02383 -15.55881 -14.86612 -14.61213 -14.44903 -14.06085 -13.80445 -13.58177 -13.50832 -13.34432 -12.95067 -12.69504 -12.17851 -12.07020 -11.95142 -11.90431 -11.48261 -11.39716 -11.25724 -11.17163 -11.05328 -10.84567 -10.55505 -10.17942 -10.00630 -9.96613 -9.68365 -9.55575 -9.49718 -8.91700 -8.80360 -8.40683 -7.98741 -6.68341 -5.80632 -3.24481 1.84704 3.35848 3.45039 3.47732 3.95233 4.16073 4.49307 5.08995 5.16229 5.22773 5.36973 5.45470 5.51279 5.57017 5.62907 5.66865 5.82549 5.90842 5.93435 5.98243 6.04398 6.11762 6.15908 6.17883 6.34510 6.39425 6.44892 6.59222 6.65104 6.67102 6.72255 6.77891 6.83274 6.85914 6.91037 7.02092 7.12961 7.38452 7.43453 7.68633 7.84367 8.44126 8.48732 9.08070 9.22401 9.86938 10.31842 11.26270 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.006350 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.612656 B = 4408.600231 C = 5400.316304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.059 4.059 3 C -0.108 4.108 4 C -0.212 4.212 5 C 0.539 3.461 6 O -0.568 6.568 7 N -0.686 5.686 8 C 0.131 3.869 9 C 0.173 3.827 10 H 0.044 0.956 11 C -0.136 4.136 12 C -0.101 4.101 13 C -0.106 4.106 14 C -0.143 4.143 15 C 0.180 3.820 16 N -0.583 5.583 17 C -0.246 4.246 18 H 0.063 0.937 19 C 0.011 3.989 20 N -0.903 5.903 21 Si 0.892 3.108 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.292 1.292 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.410 0.590 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.023 0.977 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 2.750 6.765 7.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.061 4.061 3 C -0.164 4.164 4 C -0.233 4.233 5 C 0.328 3.672 6 O -0.451 6.451 7 N -0.335 5.335 8 C 0.006 3.994 9 C 0.064 3.936 10 H 0.062 0.938 11 C -0.177 4.177 12 C -0.138 4.138 13 C -0.144 4.144 14 C -0.182 4.182 15 C 0.056 3.944 16 N -0.305 5.305 17 C -0.375 4.375 18 H 0.081 0.919 19 C -0.187 4.187 20 N -0.548 5.548 21 Si 0.722 3.278 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.219 1.219 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.247 0.753 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.042 0.958 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.175 3.353 6.695 7.490 hybrid contribution -0.353 -0.336 -1.135 1.235 sum -0.528 3.017 5.560 6.348 Atomic orbital electron populations 1.20946 0.91697 1.02602 1.02535 1.22408 0.95474 0.95510 0.92746 1.20940 0.98676 0.92483 1.04287 1.22512 0.93968 0.98618 1.08214 1.18419 0.87892 0.83875 0.77009 1.90687 1.70724 1.31220 1.52459 1.45600 1.07319 1.08570 1.71983 1.21431 0.80118 0.97615 1.00264 1.20512 0.91225 0.90484 0.91386 0.93836 1.21374 0.98685 0.96190 1.01434 1.20294 0.98691 0.96014 0.98826 1.20946 0.96029 0.96775 1.00652 1.22069 0.97310 0.99152 0.99656 1.21007 0.91551 0.81619 1.00258 1.43729 1.72160 1.03293 1.11344 1.19075 1.11267 1.08860 0.98330 0.91911 1.24906 0.95572 0.99289 0.98981 1.70036 1.15794 1.34106 1.34864 0.86378 0.77533 0.78271 0.85574 1.20433 1.21769 1.21871 0.90787 0.91545 0.91414 0.93788 0.90312 0.90193 0.85944 0.75347 0.91585 0.93425 0.91847 0.93363 0.94126 0.93560 0.90790 0.94238 0.93301 0.93849 0.90741 0.95850 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.98 36.01 0.36 -1.02 16 2 C -0.06 -0.89 6.11 -101.17 -0.62 -1.51 16 3 C -0.11 -1.62 8.33 36.00 0.30 -1.32 16 4 C -0.21 -3.66 9.63 -37.80 -0.36 -4.02 16 5 C 0.54 10.83 7.73 -12.66 -0.10 10.73 16 6 O -0.57 -12.40 13.07 5.27 0.07 -12.33 16 7 N -0.69 -13.78 4.71 -61.49 -0.29 -14.07 16 8 C 0.13 2.56 4.52 -4.04 -0.02 2.54 16 9 C 0.17 3.28 2.19 -67.97 -0.15 3.14 16 10 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 11 C -0.14 -2.32 5.06 -28.58 -0.14 -2.46 16 12 C -0.10 -1.59 5.16 -29.79 -0.15 -1.75 16 13 C -0.11 -1.81 5.51 -28.02 -0.15 -1.97 16 14 C -0.14 -2.55 5.71 -27.30 -0.16 -2.70 16 15 C 0.18 3.92 4.66 -2.93 -0.01 3.90 16 16 N -0.58 -12.73 1.77 -164.45 -0.29 -13.02 16 17 C -0.25 -6.08 7.65 -15.06 -0.12 -6.20 16 18 H 0.06 1.64 6.72 -52.48 -0.35 1.29 16 19 C 0.01 0.28 4.89 -17.43 -0.09 0.20 16 20 N -0.90 -23.87 11.03 55.49 0.61 -23.26 16 21 Si 0.89 21.45 29.58 -169.99 -5.03 16.42 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 27 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 28 H 0.04 0.53 7.94 -51.93 -0.41 0.12 16 29 H 0.08 1.26 7.22 -51.93 -0.37 0.89 16 30 H 0.08 1.37 7.22 -51.93 -0.37 1.00 16 31 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.41 8.54 8.06 -40.82 -0.33 8.21 16 33 H 0.07 1.44 6.83 -51.93 -0.35 1.08 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 39 H 0.07 1.45 7.48 -51.93 -0.39 1.06 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 42 H 0.04 0.74 7.31 -51.93 -0.38 0.36 16 43 H 0.07 1.84 6.39 -51.93 -0.33 1.51 16 44 H 0.02 0.55 8.02 -51.93 -0.42 0.13 16 45 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -26.94 346.68 -8.98 -35.92 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.87 Total: 7.55 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.41 Total: -2.44 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.03 Total: -50.35 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.07 Total: -12.33 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -26.94 -8.98 -35.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506569752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.559 kcal (2) G-P(sol) polarization free energy of solvation -26.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds