Wall clock time and date at job start Tue Mar 31 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50697 * 119.99918 * 2 1 4 4 C 1.32995 * 119.99712 * 179.97438 * 2 1 3 5 5 C 1.47107 * 119.99602 * 179.97438 * 4 2 1 6 6 O 1.21608 * 120.00255 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99677 * 180.02562 * 5 4 2 8 8 C 1.46500 * 119.99560 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.46712 * 179.97438 * 8 7 5 10 10 H 1.08997 * 109.45105 * 294.99457 * 9 8 7 11 11 C 1.54871 * 109.44646 * 175.05215 * 9 8 7 12 12 C 1.47093 * 110.32053 * 168.69203 * 11 9 8 13 13 C 1.52573 * 114.32545 * 62.80040 * 12 11 9 14 14 C 1.50874 * 109.35870 * 274.99004 * 13 12 11 15 15 C 1.53952 * 110.09757 * 91.88734 * 14 13 12 16 16 N 1.44575 * 109.45191 * 54.94983 * 9 8 7 17 17 C 1.36940 * 118.64287 * 30.75985 * 16 9 8 18 18 H 1.08003 * 119.99964 * 27.74707 * 17 16 9 19 19 C 1.38806 * 120.00056 * 207.74526 * 17 16 9 20 20 N 1.31617 * 120.00016 * 14.62825 * 19 17 16 21 21 Si 1.86806 * 119.99816 * 194.62877 * 19 17 16 22 22 H 1.48496 * 109.47099 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47065 * 120.00053 * 21 19 17 24 24 H 1.48503 * 109.46814 * 239.99650 * 21 19 17 25 25 H 1.09002 * 109.46834 * 90.00505 * 1 2 3 26 26 H 1.08999 * 109.46947 * 329.99860 * 1 2 3 27 27 H 1.09000 * 109.47223 * 210.00071 * 1 2 3 28 28 H 1.08998 * 109.47535 * 0.02562 * 3 2 1 29 29 H 1.09005 * 109.46978 * 120.00117 * 3 2 1 30 30 H 1.08999 * 109.46881 * 239.99219 * 3 2 1 31 31 H 1.08000 * 120.00174 * 0.02562 * 4 2 1 32 32 H 0.96995 * 119.99886 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.47504 * 300.00079 * 8 7 5 34 34 H 1.09003 * 109.47339 * 59.99789 * 8 7 5 35 35 H 1.08992 * 109.33172 * 288.95416 * 11 9 8 36 36 H 1.09005 * 109.32655 * 48.60534 * 11 9 8 37 37 H 1.09001 * 108.51164 * 184.06054 * 12 11 9 38 38 H 1.09004 * 108.51293 * 301.70454 * 12 11 9 39 39 H 1.09003 * 109.48258 * 34.95575 * 13 12 11 40 40 H 1.09002 * 109.48670 * 155.01857 * 13 12 11 41 41 H 1.09008 * 109.36097 * 212.07503 * 14 13 12 42 42 H 1.09000 * 109.37208 * 331.68729 * 14 13 12 43 43 H 1.08995 * 108.94567 * 80.11795 * 15 14 13 44 44 H 1.09004 * 108.94276 * 198.74548 * 15 14 13 45 45 H 0.97003 * 119.99492 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 3.6430 -1.1518 -0.0001 6 8 4.2511 -0.0986 -0.0005 7 7 4.3169 -2.3191 -0.0001 8 6 5.7819 -2.3190 -0.0001 9 6 6.2918 -3.7615 0.0006 10 1 6.0034 -4.2481 0.9323 11 6 7.8354 -3.7628 -0.1254 12 6 8.3686 -5.1073 0.1420 13 6 7.9081 -6.1741 -0.8468 14 6 6.5714 -6.7190 -0.4081 15 6 5.4324 -5.9254 -1.0738 16 7 5.7142 -4.4769 -1.1151 17 6 5.4155 -3.7820 -2.2567 18 1 5.9750 -2.8936 -2.5100 19 6 4.3938 -4.2194 -3.0882 20 7 3.5301 -5.1132 -2.6553 21 14 4.2448 -3.5395 -4.8218 22 1 5.3303 -2.5553 -5.0625 23 1 4.3572 -4.6507 -5.8006 24 1 2.9278 -2.8719 -4.9800 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5139 27 1 -0.3634 -0.8900 0.5138 28 1 1.5522 2.1336 0.0005 29 1 2.8872 1.3628 0.8900 30 1 2.8872 1.3627 -0.8899 31 1 1.6319 -2.0871 0.0005 32 1 3.8318 -3.1590 0.0007 33 1 6.1452 -1.8051 -0.8900 34 1 6.1452 -1.8051 0.8899 35 1 8.1154 -3.4576 -1.1335 36 1 8.2566 -3.0607 0.5942 37 1 9.4573 -5.0591 0.1172 38 1 8.0595 -5.4096 1.1426 39 1 7.8133 -5.7333 -1.8392 40 1 8.6387 -6.9826 -0.8759 41 1 6.4969 -7.7680 -0.6952 42 1 6.4849 -6.6357 0.6753 43 1 5.2964 -6.2885 -2.0924 44 1 4.5116 -6.0916 -0.5146 45 1 2.8163 -5.4191 -3.2366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506569752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:36 Heat of formation + Delta-G solvation = -29.130385 kcal Electronic energy + Delta-G solvation = -23455.841049 eV Core-core repulsion = 20280.055225 eV Total energy + Delta-G solvation = -3175.785825 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.77033 -39.62826 -36.59451 -35.73042 -35.16072 -33.24248 -32.46081 -29.56548 -28.60824 -28.13032 -26.95949 -25.20267 -23.77480 -21.82749 -21.18253 -20.78860 -19.66318 -18.10111 -17.66578 -17.26134 -16.42416 -16.21757 -15.97161 -15.71993 -15.22017 -15.07877 -14.95506 -14.61923 -14.47854 -14.11391 -13.68096 -13.38883 -13.27370 -13.24699 -13.08520 -12.86859 -12.83332 -12.70266 -12.60943 -12.38057 -12.34600 -11.99921 -11.54060 -11.40105 -11.31898 -11.19847 -10.99665 -10.45701 -10.35066 -10.15959 -9.55573 -8.54484 -7.79055 -5.21790 0.51837 1.38780 1.45022 1.50371 2.42414 2.52957 2.67172 3.36028 3.60984 3.92268 3.97735 4.04551 4.10329 4.27301 4.36914 4.45000 4.51506 4.60887 4.62310 4.68007 4.70992 4.80004 4.86497 4.93568 5.01191 5.05438 5.08900 5.13899 5.19908 5.26656 5.27250 5.38611 5.43304 5.56191 5.59052 5.67427 5.68270 5.73688 5.78021 5.84659 5.91885 6.48027 6.87416 7.27629 7.49114 8.01569 8.39608 9.24679 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.006350 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.612656 B = 4408.600231 C = 5400.316304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.037 4.037 3 C -0.107 4.107 4 C -0.247 4.247 5 C 0.531 3.469 6 O -0.593 6.593 7 N -0.690 5.690 8 C 0.135 3.865 9 C 0.173 3.827 10 H 0.055 0.945 11 C -0.128 4.128 12 C -0.100 4.100 13 C -0.103 4.103 14 C -0.132 4.132 15 C 0.189 3.811 16 N -0.587 5.587 17 C -0.229 4.229 18 H 0.046 0.954 19 C -0.028 4.028 20 N -0.919 5.919 21 Si 0.931 3.069 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.298 1.298 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.406 0.594 33 H 0.038 0.962 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.039 0.961 44 H 0.002 0.998 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 2.915 8.211 8.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.039 4.039 3 C -0.164 4.164 4 C -0.267 4.267 5 C 0.322 3.678 6 O -0.478 6.478 7 N -0.338 5.338 8 C 0.010 3.990 9 C 0.065 3.935 10 H 0.073 0.927 11 C -0.168 4.168 12 C -0.138 4.138 13 C -0.141 4.141 14 C -0.171 4.171 15 C 0.065 3.935 16 N -0.309 5.309 17 C -0.360 4.360 18 H 0.064 0.936 19 C -0.224 4.224 20 N -0.565 5.565 21 Si 0.762 3.238 22 H -0.209 1.209 23 H -0.219 1.219 24 H -0.226 1.226 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.147 0.853 32 H 0.241 0.759 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.020 0.980 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.067 3.518 8.153 8.880 hybrid contribution -0.375 -0.293 -1.557 1.629 sum -0.443 3.225 6.596 7.355 Atomic orbital electron populations 1.21048 0.88485 1.04465 1.03627 1.22875 0.97668 0.94559 0.88802 1.20916 0.99067 0.93904 1.02466 1.22478 0.92333 0.99964 1.11957 1.18958 0.89230 0.83384 0.76259 1.90664 1.71554 1.31799 1.53799 1.45671 1.07469 1.08480 1.72154 1.21396 0.80120 0.97905 0.99546 1.20681 0.92509 0.89675 0.90649 0.92663 1.21282 0.96669 0.97950 1.00906 1.20279 1.00017 0.94465 0.99000 1.20908 0.96141 0.97838 0.99211 1.21940 0.96026 0.99037 1.00101 1.20788 0.92596 0.81876 0.98273 1.43770 1.72209 1.03528 1.11437 1.18985 1.10019 1.07920 0.99106 0.93607 1.25262 0.96104 1.00253 1.00782 1.70124 1.16208 1.35142 1.35070 0.85766 0.76731 0.77503 0.83770 1.20870 1.21925 1.22607 0.89777 0.88939 0.90384 0.90252 0.91495 0.92662 0.85336 0.75868 0.94396 0.91931 0.94040 0.90965 0.91906 0.92027 0.93993 0.91767 0.92066 0.92230 0.94251 0.98026 0.94507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 9.98 71.24 0.71 -1.66 16 2 C -0.04 -1.06 6.11 -17.62 -0.11 -1.17 16 3 C -0.11 -3.11 8.33 71.23 0.59 -2.51 16 4 C -0.25 -8.49 9.63 23.43 0.23 -8.26 16 5 C 0.53 21.77 7.73 86.57 0.67 22.44 16 6 O -0.59 -26.50 13.07 -4.06 -0.05 -26.56 16 7 N -0.69 -28.29 4.71 -466.69 -2.20 -30.49 16 8 C 0.14 5.34 4.52 86.38 0.39 5.73 16 9 C 0.17 6.44 2.19 45.99 0.10 6.54 16 10 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 11 C -0.13 -4.12 5.06 29.40 0.15 -3.97 16 12 C -0.10 -2.85 5.16 28.62 0.15 -2.70 16 13 C -0.10 -3.29 5.51 29.76 0.16 -3.13 16 14 C -0.13 -4.48 5.71 30.22 0.17 -4.31 16 15 C 0.19 8.30 4.66 86.49 0.40 8.70 16 16 N -0.59 -25.91 1.77 -674.18 -1.20 -27.10 16 17 C -0.23 -11.67 7.65 84.03 0.64 -11.02 16 18 H 0.05 2.49 6.72 -2.91 -0.02 2.47 16 19 C -0.03 -1.48 4.89 84.86 0.41 -1.06 16 20 N -0.92 -49.88 11.03 21.65 0.24 -49.64 16 21 Si 0.93 45.12 29.58 68.60 2.03 47.15 16 22 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.09 1.39 8.05 -2.39 -0.02 1.37 16 27 H 0.08 1.43 8.07 -2.39 -0.02 1.41 16 28 H 0.08 1.71 7.94 -2.39 -0.02 1.69 16 29 H 0.07 2.12 7.22 -2.38 -0.02 2.10 16 30 H 0.05 1.90 7.22 -2.39 -0.02 1.88 16 31 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 32 H 0.41 17.30 8.06 -92.71 -0.75 16.55 16 33 H 0.04 1.70 6.83 -2.39 -0.02 1.69 16 34 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 2.00 8.11 -2.38 -0.02 1.98 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.61 7.35 -2.38 -0.02 1.59 16 39 H 0.04 1.61 7.48 -2.39 -0.02 1.59 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.06 1.85 7.31 -2.39 -0.02 1.83 16 43 H 0.04 1.99 6.39 -2.39 -0.02 1.98 16 44 H 0.00 0.08 8.02 -2.39 -0.02 0.06 16 45 H 0.25 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -59.96 346.68 3.70 -56.26 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.21 Total: 26.77 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 4.68 Total: 3.61 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -3.16 Total: -107.24 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.56 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -59.96 3.70 -56.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506569752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.127 kcal (2) G-P(sol) polarization free energy of solvation -59.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds