Wall clock time and date at job start Tue Mar 31 2020 01:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47326 * 2 1 4 4 C 1.52998 * 109.47302 * 120.00055 * 2 1 3 5 5 H 1.09000 * 109.47321 * 184.99703 * 4 2 1 6 6 C 1.53004 * 109.47023 * 64.99921 * 4 2 1 7 7 N 1.46499 * 109.47198 * 185.00121 * 6 4 2 8 8 C 1.34777 * 119.99665 * 180.27868 * 7 6 4 9 9 O 1.21283 * 119.99990 * 359.71991 * 8 7 6 10 10 C 1.50698 * 119.99538 * 179.72653 * 8 7 6 11 11 H 1.09001 * 115.53256 * 34.49966 * 10 8 7 12 12 C 1.53002 * 117.46045 * 179.97438 * 10 8 7 13 13 H 1.09005 * 119.29622 * 356.28611 * 12 10 8 14 14 C 1.54265 * 118.19992 * 201.21305 * 12 10 8 15 15 C 1.54888 * 104.19486 * 272.20877 * 14 12 10 16 16 C 1.54884 * 102.75084 * 37.93910 * 15 14 12 17 17 C 1.53010 * 117.45628 * 249.03627 * 10 8 7 18 18 H 1.08998 * 119.29909 * 3.71285 * 17 10 8 19 19 N 1.46494 * 109.47389 * 305.00136 * 4 2 1 20 20 C 1.36939 * 119.99807 * 275.00196 * 19 4 2 21 21 H 1.07997 * 120.00301 * 359.97438 * 20 19 4 22 22 C 1.38816 * 119.99803 * 180.02562 * 20 19 4 23 23 N 1.31619 * 120.00011 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99981 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47498 * 59.99534 * 24 22 20 26 26 H 1.48501 * 109.47231 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46834 * 299.99495 * 24 22 20 28 28 H 1.08998 * 109.47167 * 300.00267 * 1 2 3 29 29 H 1.09000 * 109.47019 * 59.99790 * 1 2 3 30 30 H 1.08997 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47135 * 240.00289 * 2 1 3 32 32 H 1.08998 * 109.46778 * 60.00070 * 3 2 1 33 33 H 1.08995 * 109.47319 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47243 * 300.00072 * 3 2 1 35 35 H 1.09009 * 109.46730 * 64.99908 * 6 4 2 36 36 H 1.08998 * 109.46846 * 305.00453 * 6 4 2 37 37 H 0.97001 * 119.99790 * 359.97438 * 7 6 4 38 38 H 1.09000 * 110.48695 * 30.88806 * 14 12 10 39 39 H 1.09003 * 110.48507 * 153.53198 * 14 12 10 40 40 H 1.09001 * 110.75607 * 279.62663 * 15 14 12 41 41 H 1.09000 * 110.91449 * 156.33187 * 15 14 12 42 42 H 1.08999 * 110.49123 * 203.37666 * 16 15 14 43 43 H 1.09003 * 110.59497 * 80.78919 * 16 15 14 44 44 H 0.97000 * 120.00254 * 94.99110 * 19 4 2 45 45 H 0.97001 * 120.00421 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1263 -0.6444 1.2951 6 6 1.6352 -2.1955 1.1879 7 7 2.0183 -2.8594 2.4363 8 6 1.7641 -4.1720 2.6070 9 8 1.2137 -4.8022 1.7291 10 6 2.1638 -4.8563 3.8888 11 1 2.0932 -4.2458 4.7891 12 6 1.8469 -6.3473 4.0211 13 1 1.2960 -6.8482 3.2250 14 6 1.7734 -6.9540 5.4375 15 6 3.2329 -7.3684 5.7494 16 6 4.0569 -6.2191 5.1179 17 6 3.2992 -5.8796 3.8179 18 1 3.8181 -6.0358 2.8722 19 7 1.4559 -0.1038 2.4423 20 6 2.0442 1.0001 2.9996 21 1 2.9389 1.4153 2.5599 22 6 1.4910 1.5849 4.1306 23 7 0.4008 1.0787 4.6669 24 14 2.2938 3.0903 4.8913 25 1 2.3235 4.1918 3.8958 26 1 1.5153 3.5185 6.0811 27 1 3.6814 2.7569 5.3021 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 2.1408 -2.6765 0.3505 36 1 0.5563 -2.2707 1.0526 37 1 2.4589 -2.3554 3.1383 38 1 1.4268 -6.2093 6.1541 39 1 1.1193 -7.8259 5.4456 40 1 3.4733 -8.3209 5.2771 41 1 3.4016 -7.4189 6.8251 42 1 5.0693 -6.5545 4.8927 43 1 4.0812 -5.3549 5.7818 44 1 0.6524 -0.4767 2.8375 45 1 0.0140 1.4876 5.4569 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568447179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:21 Heat of formation + Delta-G solvation = -21.246935 kcal Electronic energy + Delta-G solvation = -22477.539006 eV Core-core repulsion = 19302.095033 eV Total energy + Delta-G solvation = -3175.443973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22623 -38.42674 -37.11741 -33.79056 -32.90982 -31.82170 -30.17870 -28.33795 -28.05488 -26.37179 -24.49568 -23.29089 -21.84851 -20.69312 -19.89335 -19.69475 -18.73669 -17.47922 -16.98435 -15.83199 -15.24640 -15.11644 -14.81604 -14.37180 -14.18107 -13.61308 -13.42527 -13.24529 -13.09661 -12.93749 -12.72698 -12.21279 -11.91636 -11.55055 -11.36571 -11.30791 -11.24941 -11.00478 -10.96724 -10.94126 -10.81449 -10.54635 -10.27974 -10.16151 -10.09155 -9.90832 -9.85958 -9.48917 -9.40404 -8.92916 -8.56288 -7.02874 -5.82193 -3.10982 2.74144 3.38913 3.44543 3.45545 3.48045 3.77761 4.51872 4.54514 4.65573 4.69192 5.09874 5.14697 5.26102 5.33974 5.37257 5.40842 5.43950 5.52383 5.54795 5.63165 5.71804 5.74314 5.85211 5.89339 5.91158 5.95148 6.04225 6.14228 6.19908 6.24464 6.31918 6.34368 6.44026 6.56013 6.65760 6.71985 6.83311 6.97759 7.08344 7.30203 7.65494 7.99436 8.35162 8.62272 9.47245 10.02330 10.38641 11.39539 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.004579 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.580904 B = 6113.485995 C = 7358.644881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.168 3.832 5 H 0.053 0.947 6 C 0.112 3.888 7 N -0.706 5.706 8 C 0.540 3.460 9 O -0.557 6.557 10 C -0.158 4.158 11 H 0.122 0.878 12 C -0.132 4.132 13 H 0.120 0.880 14 C -0.097 4.097 15 C -0.122 4.122 16 C -0.097 4.097 17 C -0.140 4.140 18 H 0.112 0.888 19 N -0.717 5.717 20 C -0.237 4.237 21 H 0.072 0.928 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.902 3.098 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.386 0.614 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 -12.446 -1.272 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.071 0.929 6 C -0.012 4.012 7 N -0.357 5.357 8 C 0.326 3.674 9 O -0.436 6.436 10 C -0.179 4.179 11 H 0.140 0.860 12 C -0.150 4.150 13 H 0.138 0.862 14 C -0.135 4.135 15 C -0.160 4.160 16 C -0.134 4.134 17 C -0.159 4.159 18 H 0.130 0.870 19 N -0.359 5.359 20 C -0.368 4.368 21 H 0.090 0.910 22 C -0.206 4.206 23 N -0.578 5.578 24 Si 0.733 3.267 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.214 1.214 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.220 0.780 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.139 -12.726 -1.828 13.845 hybrid contribution 0.272 1.221 0.788 1.479 sum 5.411 -11.505 -1.039 12.756 Atomic orbital electron populations 1.21768 0.95691 1.00618 1.01691 1.21611 0.96193 0.97144 0.97936 1.21841 0.99527 0.96398 1.02135 1.20543 0.96828 0.88425 0.88466 0.92926 1.21737 1.00536 0.93448 0.85479 1.45904 1.60563 1.09099 1.20084 1.19522 0.78497 0.82142 0.87224 1.90646 1.43438 1.65430 1.44080 1.22390 1.04441 0.92799 0.98297 0.86032 1.23226 0.99011 0.93808 0.99001 0.86205 1.22000 0.96858 1.00288 0.94348 1.22683 0.94467 0.98459 1.00385 1.21997 0.98411 0.98449 0.94564 1.23214 0.90795 1.02027 0.99869 0.87008 1.42412 1.31893 1.33154 1.28448 1.19155 1.07070 1.03909 1.06650 0.91016 1.24707 0.97808 0.99478 0.98621 1.69647 1.21921 1.42307 1.23886 0.86355 0.78409 0.83221 0.78694 1.21312 1.21835 1.21366 0.90972 0.94434 0.93810 0.93302 0.89569 0.94172 0.94857 0.92122 0.91475 0.75242 0.91071 0.91010 0.91330 0.91261 0.91056 0.90958 0.78017 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.74 37.16 0.32 -2.12 16 2 C -0.11 -1.83 2.74 -90.62 -0.25 -2.08 16 3 C -0.14 -2.51 8.46 37.16 0.31 -2.20 16 4 C 0.17 3.08 2.28 -67.93 -0.16 2.92 16 5 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 6 C 0.11 1.94 5.10 -4.04 -0.02 1.92 16 7 N -0.71 -12.02 5.39 -60.29 -0.32 -12.34 16 8 C 0.54 9.26 7.61 -10.99 -0.08 9.18 16 9 O -0.56 -11.14 16.32 5.55 0.09 -11.05 16 10 C -0.16 -2.21 5.73 -91.77 -0.53 -2.74 16 11 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 12 C -0.13 -1.65 6.39 -89.48 -0.57 -2.22 16 13 H 0.12 1.65 7.78 -51.93 -0.40 1.24 16 14 C -0.10 -0.97 6.63 -25.07 -0.17 -1.14 16 15 C -0.12 -1.05 6.91 -24.74 -0.17 -1.22 16 16 C -0.10 -0.93 6.62 -25.08 -0.17 -1.09 16 17 C -0.14 -1.67 6.64 -89.48 -0.59 -2.26 16 18 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 19 N -0.72 -15.91 3.53 -53.43 -0.19 -16.10 16 20 C -0.24 -5.88 7.75 -15.06 -0.12 -6.00 16 21 H 0.07 1.75 7.32 -52.49 -0.38 1.37 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -26.36 13.06 55.49 0.72 -25.63 16 24 Si 0.90 21.27 29.55 -169.99 -5.02 16.25 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 28 H 0.07 1.47 7.47 -51.93 -0.39 1.08 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.73 6.46 -51.93 -0.34 0.39 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.80 5.99 -51.93 -0.31 1.49 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.07 1.24 6.34 -51.93 -0.33 0.91 16 37 H 0.41 7.05 8.14 -40.82 -0.33 6.72 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.39 9.44 7.80 -40.82 -0.32 9.12 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -28.23 355.84 -9.49 -37.72 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -7.85 Total: 15.19 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -2.28 Total: -9.40 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: 0.21 Total: -54.07 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.23 -9.49 -37.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568447179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.476 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds