Wall clock time and date at job start Tue Mar 31 2020 01:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47222 * 2 1 4 4 C 1.52995 * 109.46898 * 119.99608 * 2 1 3 5 5 H 1.09002 * 109.47544 * 299.99985 * 4 2 1 6 6 C 1.53004 * 109.46864 * 60.00173 * 4 2 1 7 7 N 1.46507 * 109.46980 * 174.99955 * 6 4 2 8 8 C 1.34775 * 119.99612 * 180.02562 * 7 6 4 9 9 O 1.21276 * 120.00577 * 359.97438 * 8 7 6 10 10 C 1.50709 * 119.99676 * 179.97438 * 8 7 6 11 11 H 1.09004 * 115.52299 * 325.49563 * 10 8 7 12 12 C 1.52996 * 117.46211 * 110.95586 * 10 8 7 13 13 H 1.09002 * 119.29799 * 356.28763 * 12 10 8 14 14 C 1.54259 * 118.19926 * 201.21386 * 12 10 8 15 15 C 1.54891 * 104.19788 * 272.21021 * 14 12 10 16 16 C 1.54889 * 102.74465 * 37.94031 * 15 14 12 17 17 C 1.52995 * 117.46004 * 179.97438 * 10 8 7 18 18 H 1.09004 * 119.29890 * 3.71151 * 17 10 8 19 19 N 1.46499 * 109.47258 * 179.97438 * 4 2 1 20 20 C 1.36935 * 119.99926 * 85.00376 * 19 4 2 21 21 H 1.08005 * 119.99877 * 359.97438 * 20 19 4 22 22 C 1.38811 * 120.00369 * 179.73019 * 20 19 4 23 23 N 1.31617 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47154 * 89.99247 * 24 22 20 26 26 H 1.48496 * 109.47375 * 209.99772 * 24 22 20 27 27 H 1.48502 * 109.46736 * 329.99467 * 24 22 20 28 28 H 1.08997 * 109.47105 * 300.00537 * 1 2 3 29 29 H 1.09008 * 109.46672 * 59.99647 * 1 2 3 30 30 H 1.08988 * 109.47526 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47010 * 239.99919 * 2 1 3 32 32 H 1.08998 * 109.47319 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47012 * 299.99975 * 3 2 1 34 34 H 1.08997 * 109.47519 * 59.99716 * 3 2 1 35 35 H 1.08996 * 109.47116 * 294.99243 * 6 4 2 36 36 H 1.08992 * 109.47265 * 54.99911 * 6 4 2 37 37 H 0.96995 * 119.99766 * 359.97438 * 7 6 4 38 38 H 1.08998 * 110.48920 * 30.88985 * 14 12 10 39 39 H 1.09003 * 110.48701 * 153.52997 * 14 12 10 40 40 H 1.08996 * 110.75421 * 156.25785 * 15 14 12 41 41 H 1.09001 * 110.75718 * 279.62782 * 15 14 12 42 42 H 1.08994 * 110.48562 * 203.37571 * 16 15 14 43 43 H 1.09008 * 110.48338 * 80.73551 * 16 15 14 44 44 H 0.97005 * 120.00261 * 265.00500 * 19 4 2 45 45 H 0.97004 * 120.00382 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 1.5299 -2.1637 1.2493 7 7 2.1140 -2.8881 2.3808 8 6 1.8058 -4.1846 2.5822 9 8 1.0447 -4.7515 1.8271 10 6 2.4071 -4.9301 3.7458 11 1 3.4256 -4.6454 4.0102 12 6 1.4696 -5.3340 4.8854 13 1 0.4254 -5.0228 4.8528 14 6 2.0876 -5.6319 6.2670 15 6 2.4502 -7.1365 6.2045 16 6 2.9494 -7.3075 4.7482 17 6 2.0171 -6.3992 3.9201 18 1 1.3763 -6.8728 3.1762 19 7 3.5049 -0.7217 1.2490 20 6 4.1901 0.3529 1.7499 21 1 3.6504 1.2010 2.1448 22 6 5.5782 0.3500 1.7549 23 7 6.2358 -0.6858 1.2786 24 14 6.5129 1.8156 2.4389 25 1 6.7546 1.6150 3.8902 26 1 7.8132 1.9463 1.7338 27 1 5.7136 3.0507 2.2363 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.4436 -2.1650 1.3389 36 1 1.8182 -2.6510 0.3180 37 1 2.7230 -2.4349 2.9845 38 1 2.9829 -5.0299 6.4223 39 1 1.3607 -5.4472 7.0580 40 1 3.2425 -7.3727 6.9148 41 1 1.5704 -7.7538 6.3862 42 1 2.8515 -8.3456 4.4309 43 1 3.9839 -6.9760 4.6582 44 1 3.9896 -1.4833 0.8940 45 1 7.2058 -0.6880 1.2823 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568447182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:24 Heat of formation + Delta-G solvation = -39.396977 kcal Electronic energy + Delta-G solvation = -22387.301277 eV Core-core repulsion = 19211.070259 eV Total energy + Delta-G solvation = -3176.231018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39526 -39.66523 -38.55448 -35.26601 -34.91968 -32.76252 -32.13793 -29.68321 -29.13518 -27.50514 -26.07797 -24.73587 -23.07054 -21.64693 -21.22453 -20.68405 -20.58900 -19.23130 -18.33796 -17.20542 -16.92702 -16.26184 -16.10213 -15.75001 -15.50690 -15.11198 -14.88092 -14.78338 -14.24105 -14.04119 -13.85151 -13.69417 -13.43883 -12.91478 -12.85745 -12.71361 -12.48287 -12.43989 -12.29409 -12.25849 -12.01659 -11.97987 -11.76461 -11.69011 -11.46060 -11.29474 -11.11661 -11.01150 -10.83849 -10.59182 -10.01974 -8.96531 -7.87572 -5.15004 1.44624 1.50171 1.51676 1.58620 2.19349 2.59772 2.71324 3.44668 3.53928 3.72857 3.76885 3.85234 3.91771 4.11643 4.20912 4.26115 4.28999 4.30830 4.43584 4.49185 4.52318 4.63584 4.69774 4.75392 4.81758 4.91827 4.96808 4.98833 5.05806 5.14745 5.16519 5.20929 5.21984 5.25459 5.29506 5.32241 5.50032 5.53210 5.60434 5.64373 5.76750 6.32296 6.58156 7.22483 7.40257 8.11093 8.36648 9.35409 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.004659 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.834052 B = 6008.545968 C = 7456.190566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.134 4.134 4 C 0.173 3.827 5 H 0.057 0.943 6 C 0.122 3.878 7 N -0.706 5.706 8 C 0.537 3.463 9 O -0.589 6.589 10 C -0.176 4.176 11 H 0.125 0.875 12 C -0.127 4.127 13 H 0.108 0.892 14 C -0.095 4.095 15 C -0.116 4.116 16 C -0.096 4.096 17 C -0.135 4.135 18 H 0.103 0.897 19 N -0.728 5.728 20 C -0.215 4.215 21 H 0.080 0.920 22 C -0.071 4.071 23 N -0.968 5.968 24 Si 0.959 3.041 25 H -0.289 1.289 26 H -0.305 1.305 27 H -0.271 1.271 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.486 -7.894 8.561 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.192 4.192 4 C 0.065 3.935 5 H 0.075 0.925 6 C -0.003 4.003 7 N -0.356 5.356 8 C 0.325 3.675 9 O -0.471 6.471 10 C -0.196 4.196 11 H 0.143 0.857 12 C -0.146 4.146 13 H 0.126 0.874 14 C -0.132 4.132 15 C -0.153 4.153 16 C -0.134 4.134 17 C -0.154 4.154 18 H 0.122 0.878 19 N -0.367 5.367 20 C -0.347 4.347 21 H 0.097 0.903 22 C -0.263 4.263 23 N -0.620 5.620 24 Si 0.790 3.210 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.196 1.196 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.247 0.753 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.204 0.796 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.995 -8.086 8.118 15.880 hybrid contribution 1.401 0.905 -0.197 1.679 sum -9.594 -7.181 7.921 14.365 Atomic orbital electron populations 1.21849 0.93948 1.01804 1.02230 1.21626 0.95919 0.96849 0.98403 1.21729 1.01682 0.95421 1.00332 1.20674 0.83984 0.92084 0.96801 0.92502 1.21632 0.97936 0.92246 0.88439 1.45938 1.48299 1.10866 1.30486 1.20055 0.80280 0.81746 0.85401 1.90617 1.38732 1.68675 1.49040 1.22357 1.01304 0.98828 0.97159 0.85687 1.23334 0.97914 1.02138 0.91193 0.87353 1.22068 1.00872 0.96913 0.93360 1.22688 1.01720 0.95344 0.95556 1.22060 0.97958 0.98955 0.94378 1.23302 1.02402 0.88382 1.01266 0.87843 1.42576 1.00485 1.20158 1.73518 1.19478 0.88828 0.96499 1.29915 0.90256 1.25362 0.97554 0.99894 1.03534 1.69810 1.06395 1.31659 1.54109 0.85344 0.77937 0.80215 0.77520 1.21676 1.23183 1.19607 0.92149 0.92013 0.92470 0.93239 0.93207 0.93006 0.93404 0.90176 0.93551 0.75317 0.90940 0.89385 0.89553 0.90347 0.89864 0.91246 0.79642 0.94425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.84 71.98 0.64 -2.98 16 2 C -0.11 -3.51 2.69 -10.79 -0.03 -3.54 16 3 C -0.13 -4.64 8.26 71.98 0.59 -4.05 16 4 C 0.17 6.28 2.18 44.99 0.10 6.38 16 5 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 6 C 0.12 4.20 4.73 86.38 0.41 4.60 16 7 N -0.71 -24.30 5.39 -463.05 -2.49 -26.79 16 8 C 0.54 18.69 7.61 87.66 0.67 19.36 16 9 O -0.59 -23.95 16.32 -3.02 -0.05 -24.00 16 10 C -0.18 -4.90 5.73 -11.54 -0.07 -4.97 16 11 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 12 C -0.13 -2.88 6.64 -10.09 -0.07 -2.94 16 13 H 0.11 2.52 8.14 -2.39 -0.02 2.51 16 14 C -0.09 -1.59 6.62 31.67 0.21 -1.38 16 15 C -0.12 -1.67 6.91 31.89 0.22 -1.45 16 16 C -0.10 -1.76 6.63 31.67 0.21 -1.55 16 17 C -0.13 -3.31 6.39 -10.08 -0.06 -3.37 16 18 H 0.10 2.88 7.78 -2.39 -0.02 2.86 16 19 N -0.73 -33.20 4.44 -322.94 -1.43 -34.64 16 20 C -0.22 -10.81 7.57 84.03 0.64 -10.17 16 21 H 0.08 3.83 7.39 -2.91 -0.02 3.81 16 22 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 23 N -0.97 -56.75 13.06 21.65 0.28 -56.47 16 24 Si 0.96 44.23 29.55 68.60 2.03 46.26 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.06 1.41 6.55 -2.39 -0.02 1.40 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 2.09 6.01 -2.39 -0.01 2.08 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 2.53 6.71 -2.39 -0.02 2.52 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.41 14.28 8.14 -92.71 -0.75 13.53 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.37 19.01 7.80 -92.70 -0.72 18.29 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -61.99 357.14 1.75 -60.24 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -0.50 Total: 44.83 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 3.92 Total: -9.43 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -3.65 Total: -117.90 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -61.99 1.75 -60.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568447182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.846 kcal (2) G-P(sol) polarization free energy of solvation -61.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds