Wall clock time and date at job start Tue Mar 31 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00298 * 2 1 4 4 H 1.08998 * 109.47521 * 359.97438 * 3 2 1 5 5 C 1.53005 * 109.47391 * 119.99999 * 3 2 1 6 6 C 1.53000 * 109.46894 * 295.00121 * 5 3 2 7 7 C 1.52998 * 109.47115 * 239.99496 * 3 2 1 8 8 C 1.50705 * 109.47054 * 65.00112 * 7 3 2 9 9 O 1.21279 * 119.99571 * 0.02562 * 8 7 3 10 10 N 1.34777 * 120.00278 * 179.97438 * 8 7 3 11 11 C 1.46495 * 120.00030 * 180.02562 * 10 8 7 12 12 C 1.53002 * 110.64144 * 303.14318 * 11 10 8 13 13 C 1.55151 * 110.72020 * 180.02562 * 11 10 8 14 14 C 1.54914 * 101.58023 * 277.13513 * 13 11 10 15 15 N 1.47420 * 104.83159 * 322.99181 * 14 13 11 16 16 C 1.36945 * 125.64792 * 204.08975 * 15 14 13 17 17 H 1.07997 * 119.99756 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47020 * 108.70626 * 24.35323 * 15 14 13 25 25 H 1.07995 * 120.00617 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99637 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99637 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47142 * 54.99582 * 5 3 2 29 29 H 1.08994 * 109.47355 * 174.99900 * 5 3 2 30 30 H 1.09002 * 109.47595 * 59.99829 * 6 5 3 31 31 H 1.08999 * 109.46892 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.46785 * 299.99679 * 6 5 3 33 33 H 1.09004 * 109.47758 * 305.00404 * 7 3 2 34 34 H 1.08998 * 109.47229 * 184.99832 * 7 3 2 35 35 H 0.97000 * 119.99444 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47012 * 296.85846 * 12 11 10 37 37 H 1.09000 * 109.47235 * 56.85267 * 12 11 10 38 38 H 1.08999 * 109.47449 * 176.86138 * 12 11 10 39 39 H 1.09002 * 111.00697 * 159.06407 * 13 11 10 40 40 H 1.08994 * 111.00548 * 35.20875 * 13 11 10 41 41 H 1.08999 * 110.37083 * 204.15142 * 14 13 11 42 42 H 1.08998 * 110.45606 * 81.87777 * 14 13 11 43 43 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.88406 * 118.12749 * 24 15 14 45 45 H 1.09001 * 109.88743 * 239.29401 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 1.2493 6 6 2.0565 1.4307 2.4953 7 6 2.9432 1.3860 -1.2492 8 6 2.0699 1.4299 -2.4766 9 8 0.8628 1.3999 -2.3633 10 7 2.6303 1.5035 -3.7001 11 6 1.7813 1.5467 -4.8932 12 6 0.8555 0.3295 -4.9408 13 6 2.6455 1.6291 -6.1792 14 6 2.9450 3.1471 -6.2559 15 7 1.7071 3.7998 -5.7922 16 6 1.3109 5.0729 -6.1046 17 1 0.3826 5.4611 -5.7124 18 6 2.1026 5.8644 -6.9254 19 7 3.2338 5.3911 -7.4038 20 14 1.5618 7.6007 -7.3522 21 1 2.5747 8.2315 -8.2360 22 1 0.2534 7.5535 -8.0529 23 1 1.4276 8.3977 -6.1063 24 6 0.9716 2.8600 -4.9337 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.5906 0.5103 1.2952 29 1 3.5541 2.2877 1.2056 30 1 1.4455 0.5290 2.5390 31 1 2.6832 1.4880 3.3853 32 1 1.4091 2.3064 2.4493 33 1 3.5907 0.5102 -1.2951 34 1 3.5541 2.2876 -1.2055 35 1 3.5958 1.5278 -3.7907 36 1 1.4530 -0.5784 -5.0226 37 1 0.2590 0.2909 -4.0293 38 1 0.1950 0.4089 -5.8043 39 1 2.0813 1.2977 -7.0510 40 1 3.5651 1.0545 -6.0693 41 1 3.1660 3.4388 -7.2826 42 1 3.7777 3.4046 -5.6015 43 1 3.7867 5.9441 -7.9776 44 1 0.8782 3.2713 -3.9285 45 1 -0.0169 2.6711 -5.3524 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569646377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:48 Heat of formation + Delta-G solvation = -4.677371 kcal Electronic energy + Delta-G solvation = -22941.536700 eV Core-core repulsion = 19766.811238 eV Total energy + Delta-G solvation = -3174.725463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.93998 -37.80587 -36.31303 -33.89509 -32.01539 -31.72738 -30.53184 -29.42297 -28.59765 -25.65970 -24.82323 -23.50170 -21.71021 -20.66213 -20.22446 -19.45135 -18.89344 -17.07818 -16.46601 -15.56316 -15.42145 -14.71840 -14.63033 -14.52465 -14.06713 -13.70739 -13.45470 -13.16029 -13.00606 -12.68656 -12.28149 -12.18672 -12.06519 -11.72224 -11.64468 -11.52083 -11.31570 -11.22795 -10.91670 -10.83750 -10.82237 -10.48759 -10.34368 -10.28828 -10.09581 -9.87491 -9.62240 -9.33597 -8.88002 -8.62596 -8.49176 -6.78584 -5.62906 -3.03221 2.52511 3.07454 3.42676 3.46499 3.48049 3.56828 4.51916 4.72757 4.77496 4.91006 5.14457 5.19970 5.29627 5.35962 5.42511 5.46116 5.49518 5.55714 5.62697 5.73058 5.78267 5.82526 5.84627 5.88801 6.04246 6.11856 6.14924 6.22762 6.27212 6.29233 6.42697 6.51435 6.58156 6.77715 6.80600 6.87390 7.02570 7.23092 7.47829 7.65581 7.84111 7.99283 8.38060 8.68981 9.25658 9.86528 10.51716 11.41317 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.004211 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.611170 B = 6648.290909 C = 7199.715213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.149 4.149 3 C -0.043 4.043 4 H 0.082 0.918 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.136 4.136 8 C 0.512 3.488 9 O -0.531 6.531 10 N -0.712 5.712 11 C 0.161 3.839 12 C -0.151 4.151 13 C -0.147 4.147 14 C 0.153 3.847 15 N -0.604 5.604 16 C -0.218 4.218 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.925 5.925 20 Si 0.914 3.086 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.286 1.286 24 C 0.139 3.861 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.396 0.604 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.010 0.990 43 H 0.251 0.749 44 H 0.030 0.970 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -12.178 13.396 18.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C -0.062 4.062 4 H 0.100 0.900 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.298 3.702 9 O -0.408 6.408 10 N -0.363 5.363 11 C 0.075 3.925 12 C -0.209 4.209 13 C -0.186 4.186 14 C 0.028 3.972 15 N -0.330 5.330 16 C -0.347 4.347 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.574 5.574 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.212 1.212 23 H -0.213 1.213 24 C 0.012 3.988 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.229 0.771 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.028 0.972 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.787 -12.002 13.343 17.964 hybrid contribution 0.344 0.930 -0.333 1.046 sum 1.131 -11.073 13.009 17.121 Atomic orbital electron populations 1.23671 0.95933 1.01188 0.99308 1.22590 0.95939 0.96949 1.01235 1.20134 0.96596 0.97060 0.92438 0.90002 1.21543 0.97871 1.01855 0.94109 1.21758 0.99819 1.02125 0.97089 1.21720 0.98770 1.03987 0.93100 1.20486 0.89224 0.76067 0.84396 1.90645 1.14592 1.49061 1.86486 1.46037 1.09906 1.74811 1.05567 1.21301 0.91246 0.95474 0.84503 1.22052 0.99467 0.96055 1.03325 1.23345 0.98350 1.01406 0.95499 1.21920 0.87709 0.84936 1.02608 1.44506 1.21539 1.11847 1.55141 1.19055 1.03907 0.87796 1.23896 0.90649 1.24751 0.96917 0.98670 1.00400 1.69772 1.13600 1.35708 1.38363 0.86153 0.77447 0.84023 0.77910 1.21589 1.21170 1.21300 1.21583 0.93976 0.88573 0.94627 0.89469 0.88579 0.88376 0.92011 0.91818 0.92481 0.93081 0.92768 0.89362 0.88979 0.77079 0.93441 0.90404 0.92097 0.90709 0.92006 0.87531 0.97244 0.93789 0.95213 0.95435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 13.22 29.01 0.38 -1.62 16 2 C -0.15 -1.71 6.76 -36.03 -0.24 -1.96 16 3 C -0.04 -0.49 1.82 -91.77 -0.17 -0.66 16 4 H 0.08 1.09 7.60 -51.93 -0.39 0.70 16 5 C -0.12 -1.05 5.39 -26.73 -0.14 -1.19 16 6 C -0.15 -1.31 9.73 37.16 0.36 -0.94 16 7 C -0.14 -1.55 5.16 -27.88 -0.14 -1.69 16 8 C 0.51 7.90 6.79 -10.98 -0.07 7.83 16 9 O -0.53 -9.65 11.14 5.56 0.06 -9.58 16 10 N -0.71 -11.20 5.14 -45.91 -0.24 -11.44 16 11 C 0.16 2.91 0.81 -129.98 -0.10 2.81 16 12 C -0.15 -2.45 8.44 37.16 0.31 -2.14 16 13 C -0.15 -2.71 6.07 -24.58 -0.15 -2.86 16 14 C 0.15 3.66 5.87 -2.53 -0.01 3.65 16 15 N -0.60 -15.85 3.39 -170.07 -0.58 -16.43 16 16 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.93 -26.96 10.09 55.49 0.56 -26.40 16 20 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.14 3.15 6.20 -3.06 -0.02 3.14 16 25 H 0.09 0.95 8.06 -52.49 -0.42 0.53 16 26 H 0.10 1.28 7.83 -52.48 -0.41 0.87 16 27 H 0.10 1.02 8.06 -52.48 -0.42 0.59 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.40 5.40 8.49 -40.82 -0.35 5.06 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 38 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 40 H 0.06 0.97 8.07 -51.93 -0.42 0.55 16 41 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 42 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 45 H 0.03 0.64 7.78 -51.93 -0.40 0.24 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -31.40 352.05 -8.11 -39.50 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.94 Total: 4.14 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.25 Total: -2.49 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.25 Total: -54.27 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.06 Total: -9.58 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.40 -8.11 -39.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569646377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.826 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds