Wall clock time and date at job start Tue Mar 31 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 120.00298 * 2 1 4 4 H 1.08998 * 109.47521 * 359.97438 * 3 2 1 5 5 C 1.53005 * 109.47391 * 119.99999 * 3 2 1 6 6 C 1.53000 * 109.46894 * 295.00121 * 5 3 2 7 7 C 1.52998 * 109.47115 * 239.99496 * 3 2 1 8 8 C 1.50705 * 109.47054 * 65.00112 * 7 3 2 9 9 O 1.21279 * 119.99571 * 0.02562 * 8 7 3 10 10 N 1.34777 * 120.00278 * 179.97438 * 8 7 3 11 11 C 1.46495 * 120.00030 * 180.02562 * 10 8 7 12 12 C 1.53002 * 110.64144 * 303.14318 * 11 10 8 13 13 C 1.55151 * 110.72020 * 180.02562 * 11 10 8 14 14 C 1.54914 * 101.58023 * 277.13513 * 13 11 10 15 15 N 1.47420 * 104.83159 * 322.99181 * 14 13 11 16 16 C 1.36945 * 125.64792 * 204.08975 * 15 14 13 17 17 H 1.07997 * 119.99756 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47020 * 108.70626 * 24.35323 * 15 14 13 25 25 H 1.07995 * 120.00617 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99637 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99637 * 179.97438 * 2 1 3 28 28 H 1.09006 * 109.47142 * 54.99582 * 5 3 2 29 29 H 1.08994 * 109.47355 * 174.99900 * 5 3 2 30 30 H 1.09002 * 109.47595 * 59.99829 * 6 5 3 31 31 H 1.08999 * 109.46892 * 179.97438 * 6 5 3 32 32 H 1.09006 * 109.46785 * 299.99679 * 6 5 3 33 33 H 1.09004 * 109.47758 * 305.00404 * 7 3 2 34 34 H 1.08998 * 109.47229 * 184.99832 * 7 3 2 35 35 H 0.97000 * 119.99444 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47012 * 296.85846 * 12 11 10 37 37 H 1.09000 * 109.47235 * 56.85267 * 12 11 10 38 38 H 1.08999 * 109.47449 * 176.86138 * 12 11 10 39 39 H 1.09002 * 111.00697 * 159.06407 * 13 11 10 40 40 H 1.08994 * 111.00548 * 35.20875 * 13 11 10 41 41 H 1.08999 * 110.37083 * 204.15142 * 14 13 11 42 42 H 1.08998 * 110.45606 * 81.87777 * 14 13 11 43 43 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.88406 * 118.12749 * 24 15 14 45 45 H 1.09001 * 109.88743 * 239.29401 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 1.2493 6 6 2.0565 1.4307 2.4953 7 6 2.9432 1.3860 -1.2492 8 6 2.0699 1.4299 -2.4766 9 8 0.8628 1.3999 -2.3633 10 7 2.6303 1.5035 -3.7001 11 6 1.7813 1.5467 -4.8932 12 6 0.8555 0.3295 -4.9408 13 6 2.6455 1.6291 -6.1792 14 6 2.9450 3.1471 -6.2559 15 7 1.7071 3.7998 -5.7922 16 6 1.3109 5.0729 -6.1046 17 1 0.3826 5.4611 -5.7124 18 6 2.1026 5.8644 -6.9254 19 7 3.2338 5.3911 -7.4038 20 14 1.5618 7.6007 -7.3522 21 1 2.5747 8.2315 -8.2360 22 1 0.2534 7.5535 -8.0529 23 1 1.4276 8.3977 -6.1063 24 6 0.9716 2.8600 -4.9337 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 3.5906 0.5103 1.2952 29 1 3.5541 2.2877 1.2056 30 1 1.4455 0.5290 2.5390 31 1 2.6832 1.4880 3.3853 32 1 1.4091 2.3064 2.4493 33 1 3.5907 0.5102 -1.2951 34 1 3.5541 2.2876 -1.2055 35 1 3.5958 1.5278 -3.7907 36 1 1.4530 -0.5784 -5.0226 37 1 0.2590 0.2909 -4.0293 38 1 0.1950 0.4089 -5.8043 39 1 2.0813 1.2977 -7.0510 40 1 3.5651 1.0545 -6.0693 41 1 3.1660 3.4388 -7.2826 42 1 3.7777 3.4046 -5.6015 43 1 3.7867 5.9441 -7.9776 44 1 0.8782 3.2713 -3.9285 45 1 -0.0169 2.6711 -5.3524 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569646377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:48 Heat of formation + Delta-G solvation = -23.737516 kcal Electronic energy + Delta-G solvation = -22942.363210 eV Core-core repulsion = 19766.811238 eV Total energy + Delta-G solvation = -3175.551973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26048 -39.20714 -37.43831 -35.61823 -33.66282 -32.56871 -32.04389 -30.74230 -30.19449 -27.55090 -25.89693 -25.16062 -22.54077 -22.26920 -21.74131 -20.38435 -20.32909 -18.97538 -17.80728 -17.12969 -16.69149 -16.42654 -15.74120 -15.67816 -15.45203 -15.11236 -14.64594 -14.42727 -14.33676 -14.03328 -13.92923 -13.54802 -13.30092 -13.15008 -12.97714 -12.85817 -12.76350 -12.69184 -12.19132 -12.07619 -12.02192 -11.98327 -11.95217 -11.68110 -11.64471 -11.49633 -11.30681 -10.75427 -10.53127 -9.98595 -9.81778 -8.89352 -7.79502 -5.23228 1.44363 1.47206 1.53874 1.60293 1.87625 2.35290 2.48056 3.29625 3.63066 3.72261 3.87448 3.91475 3.98636 4.04782 4.20354 4.39719 4.46002 4.49224 4.60426 4.64798 4.67721 4.70363 4.82732 4.86177 4.90742 4.96072 5.02428 5.05092 5.10118 5.11371 5.12313 5.20625 5.37517 5.41536 5.42061 5.48854 5.62040 5.76046 5.82685 5.87886 6.13186 6.30404 6.78252 7.10493 7.48952 7.76674 8.40243 9.21551 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.004211 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.611170 B = 6648.290909 C = 7199.715213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C -0.044 4.044 4 H 0.051 0.949 5 C -0.110 4.110 6 C -0.151 4.151 7 C -0.128 4.128 8 C 0.504 3.496 9 O -0.562 6.562 10 N -0.710 5.710 11 C 0.173 3.827 12 C -0.140 4.140 13 C -0.128 4.128 14 C 0.156 3.844 15 N -0.624 5.624 16 C -0.246 4.246 17 H 0.068 0.932 18 C -0.059 4.059 19 N -0.943 5.943 20 Si 0.978 3.022 21 H -0.287 1.287 22 H -0.278 1.278 23 H -0.282 1.282 24 C 0.139 3.861 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.408 0.592 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.074 0.926 42 H -0.006 1.006 43 H 0.249 0.751 44 H 0.006 0.994 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.016 -13.624 14.026 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.160 4.160 3 C -0.063 4.063 4 H 0.069 0.931 5 C -0.148 4.148 6 C -0.208 4.208 7 C -0.167 4.167 8 C 0.292 3.708 9 O -0.441 6.441 10 N -0.362 5.362 11 C 0.085 3.915 12 C -0.199 4.199 13 C -0.167 4.167 14 C 0.031 3.969 15 N -0.350 5.350 16 C -0.375 4.375 17 H 0.086 0.914 18 C -0.252 4.252 19 N -0.593 5.593 20 Si 0.806 3.194 21 H -0.212 1.212 22 H -0.205 1.205 23 H -0.209 1.209 24 C 0.013 3.987 25 H 0.116 0.884 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.244 0.756 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.012 0.988 43 H 0.059 0.941 44 H 0.024 0.976 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.217 -13.467 13.990 19.544 hybrid contribution -0.126 1.423 -0.507 1.516 sum 2.092 -12.044 13.483 18.199 Atomic orbital electron populations 1.23665 0.96550 1.00738 1.00917 1.22791 0.95712 0.97754 0.99748 1.20126 0.96481 0.95933 0.93711 0.93051 1.21515 0.97584 1.03019 0.92669 1.21760 0.99880 1.01460 0.97742 1.21752 0.98331 1.06010 0.90616 1.21261 0.89362 0.74936 0.85213 1.90647 1.16270 1.50232 1.86929 1.45990 1.10350 1.74825 1.05045 1.21069 0.91245 0.93661 0.85482 1.21951 0.99204 0.96032 1.02669 1.23190 1.00159 0.97547 0.95787 1.21744 0.86547 0.88515 1.00065 1.44789 1.22576 1.11806 1.55799 1.19338 1.04124 0.89486 1.24572 0.91386 1.25538 0.97066 1.02322 1.00232 1.70009 1.14187 1.36662 1.38399 0.85167 0.77202 0.79433 0.77603 1.21240 1.20454 1.20851 1.21655 0.94200 0.90396 0.92451 0.88387 0.90752 0.86357 0.90118 0.91246 0.92784 0.91628 0.93929 0.86053 0.87892 0.75618 0.90639 0.91753 0.92076 0.90302 0.88118 0.90755 0.98769 0.94126 0.97645 0.96665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.43 13.22 67.78 0.90 -3.53 16 2 C -0.14 -3.05 6.76 25.65 0.17 -2.87 16 3 C -0.04 -0.92 1.82 -11.54 -0.02 -0.94 16 4 H 0.05 1.40 7.60 -2.39 -0.02 1.38 16 5 C -0.11 -1.72 5.39 30.60 0.16 -1.56 16 6 C -0.15 -2.40 9.73 71.98 0.70 -1.70 16 7 C -0.13 -2.59 5.16 29.85 0.15 -2.44 16 8 C 0.50 14.92 6.79 87.66 0.59 15.51 16 9 O -0.56 -20.46 11.14 -3.03 -0.03 -20.49 16 10 N -0.71 -21.04 5.14 -417.55 -2.14 -23.18 16 11 C 0.17 6.04 0.81 4.80 0.00 6.04 16 12 C -0.14 -4.30 8.44 71.98 0.61 -3.69 16 13 C -0.13 -4.49 6.07 31.99 0.19 -4.30 16 14 C 0.16 7.50 5.87 86.86 0.51 8.01 16 15 N -0.62 -33.46 3.39 -691.97 -2.35 -35.81 16 16 C -0.25 -14.48 10.27 84.03 0.86 -13.62 16 17 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.06 -3.38 5.49 84.86 0.47 -2.91 16 19 N -0.94 -55.77 10.09 21.65 0.22 -55.55 16 20 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 24 C 0.14 6.46 6.20 86.73 0.54 6.99 16 25 H 0.10 2.10 8.06 -2.91 -0.02 2.08 16 26 H 0.07 2.10 7.83 -2.91 -0.02 2.08 16 27 H 0.12 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.88 7.38 -2.39 -0.02 0.87 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.41 10.03 8.49 -92.71 -0.79 9.25 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 2.19 5.97 -2.39 -0.01 2.17 16 38 H 0.06 1.85 8.08 -2.39 -0.02 1.84 16 39 H 0.08 2.73 8.05 -2.39 -0.02 2.71 16 40 H 0.10 2.77 8.07 -2.39 -0.02 2.75 16 41 H 0.07 4.08 5.87 -2.39 -0.01 4.07 16 42 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.01 0.28 6.90 -2.39 -0.02 0.26 16 45 H 0.02 0.74 7.78 -2.39 -0.02 0.72 16 Total: -1.00 -70.14 352.05 3.72 -66.42 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.16 Total: 21.08 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 5.84 Total: -1.01 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -4.27 Total: -114.54 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.03 Total: -20.49 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -70.14 3.72 -66.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569646377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.682 kcal (2) G-P(sol) polarization free energy of solvation -70.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds