Wall clock time and date at job start Tue Mar 31 2020 02:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47258 * 2 1 4 4 H 1.09002 * 115.56086 * 29.30459 * 3 2 1 5 5 C 1.53000 * 117.49931 * 243.62665 * 3 2 1 6 6 C 1.52997 * 117.49919 * 175.00113 * 3 2 1 7 7 H 1.08999 * 117.51655 * 0.02562 * 6 3 2 8 8 C 1.50696 * 117.49703 * 214.97670 * 6 3 2 9 9 O 1.21279 * 120.00159 * 359.97438 * 8 6 3 10 10 N 1.34784 * 120.00058 * 179.97438 * 8 6 3 11 11 C 1.47424 * 125.64641 * 5.14858 * 10 8 6 12 12 C 1.54912 * 104.83239 * 204.16376 * 11 10 8 13 13 C 1.55153 * 101.57848 * 322.98985 * 12 11 10 14 14 C 1.47020 * 125.65066 * 185.19039 * 10 8 6 15 15 H 1.08992 * 109.88414 * 59.32825 * 14 10 8 16 16 C 1.53006 * 109.87871 * 298.32289 * 14 10 8 17 17 N 1.46501 * 109.46874 * 173.82152 * 16 14 10 18 18 C 1.46500 * 120.00020 * 267.61988 * 17 16 14 19 19 C 1.36931 * 120.00085 * 87.62531 * 17 16 14 20 20 H 1.08004 * 120.00229 * 353.58263 * 19 17 16 21 21 C 1.38817 * 120.00300 * 173.86459 * 19 17 16 22 22 N 1.31617 * 119.99676 * 5.00458 * 21 19 17 23 23 Si 1.86797 * 120.00124 * 185.01102 * 21 19 17 24 24 H 1.48501 * 109.47256 * 59.99536 * 23 21 19 25 25 H 1.48499 * 109.46718 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47011 * 299.99362 * 23 21 19 27 27 H 1.08998 * 109.46798 * 300.00162 * 1 2 3 28 28 H 1.09000 * 109.47273 * 60.00115 * 1 2 3 29 29 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46868 * 240.00390 * 2 1 3 31 31 H 1.08993 * 109.47137 * 120.00288 * 2 1 3 32 32 H 1.09001 * 117.50014 * 145.01906 * 5 3 2 33 33 H 1.09000 * 117.51985 * 359.97438 * 5 3 2 34 34 H 1.09000 * 110.36684 * 323.00224 * 11 10 8 35 35 H 1.08995 * 110.36656 * 85.32312 * 11 10 8 36 36 H 1.09004 * 111.00197 * 81.06073 * 12 11 10 37 37 H 1.08995 * 111.00271 * 204.91751 * 12 11 10 38 38 H 1.08998 * 110.72412 * 277.13677 * 13 12 11 39 39 H 1.09001 * 110.72035 * 153.86414 * 13 12 11 40 40 H 1.08998 * 109.47112 * 53.82373 * 16 14 10 41 41 H 1.09003 * 109.46989 * 293.81586 * 16 14 10 42 42 H 1.08997 * 109.47240 * 244.08507 * 18 17 16 43 43 H 1.09007 * 109.47026 * 4.08974 * 18 17 16 44 44 H 1.09002 * 109.46776 * 124.08789 * 18 17 16 45 45 H 0.97005 * 120.00283 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8440 1.9076 -1.2159 6 6 3.5502 1.6578 0.1183 7 1 4.1806 0.7721 0.1956 8 6 4.0228 2.8620 0.8913 9 8 3.2158 3.6169 1.3909 10 7 5.3425 3.0999 1.0275 11 6 6.4248 2.3308 0.3869 12 6 7.6609 2.5551 1.2934 13 6 7.4734 4.0365 1.7146 14 6 5.9411 4.1690 1.8402 15 1 5.6408 4.0551 2.8817 16 6 5.4921 5.5344 1.3158 17 7 5.9716 6.5853 2.2170 18 6 5.1203 7.0553 3.3127 19 6 7.2154 7.1282 2.0351 20 1 7.8831 6.7126 1.2948 21 6 7.6206 8.2091 2.8061 22 7 6.8500 8.6498 3.7779 23 14 9.2591 9.0383 2.4643 24 1 9.2674 9.5649 1.0758 25 1 9.4557 10.1585 3.4192 26 1 10.3567 8.0512 2.6259 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.7212 2.9428 -1.5344 33 1 3.0100 1.1860 -2.0158 34 1 6.1679 1.2721 0.3509 35 1 6.6167 2.7098 -0.6169 36 1 7.6339 1.8957 2.1610 37 1 8.5859 2.4225 0.7324 38 1 7.8568 4.7075 0.9460 39 1 7.9569 4.2292 2.6724 40 1 4.4036 5.5654 1.2683 41 1 5.9041 5.6944 0.3194 42 1 4.8677 8.1035 3.1526 43 1 4.2065 6.4618 3.3432 44 1 5.6535 6.9504 4.2576 45 1 7.1329 9.4054 4.3165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570539926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:58 Heat of formation + Delta-G solvation = 13.167468 kcal Electronic energy + Delta-G solvation = -22761.285406 eV Core-core repulsion = 19587.333753 eV Total energy + Delta-G solvation = -3173.951652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.11490 -38.11695 -36.44478 -35.24559 -32.29994 -31.46658 -31.16580 -28.96102 -25.85774 -25.28406 -24.69621 -23.85868 -22.14624 -21.16345 -20.69058 -19.89777 -18.44260 -17.06989 -16.80894 -16.01531 -15.19647 -14.86954 -14.69877 -14.55609 -14.00351 -13.59970 -13.47476 -13.07232 -12.85732 -12.69057 -12.59698 -12.32228 -12.25876 -11.99864 -11.72602 -11.50693 -11.18588 -11.09535 -10.91544 -10.86793 -10.69655 -10.43689 -10.36237 -10.26256 -10.10627 -10.07761 -9.75570 -9.63405 -9.32101 -8.54149 -8.26819 -6.78721 -5.55492 -2.98493 2.72502 3.19257 3.41700 3.47148 3.48263 3.80118 4.41818 4.56169 4.66344 4.68815 4.81421 4.93046 5.02311 5.11089 5.17054 5.25812 5.29292 5.49847 5.52088 5.58144 5.65183 5.70319 5.74214 5.77133 5.83542 5.85676 5.93122 5.96066 6.00996 6.12530 6.24857 6.38176 6.46163 6.62706 6.69997 6.87598 6.98978 7.07272 7.75036 7.80921 7.88772 8.04682 8.45615 8.51570 9.35651 9.99403 10.44575 11.43563 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028745 B = 0.003948 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.852322 B = 7089.838455 C = 7707.288585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.121 4.121 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.184 4.184 7 H 0.119 0.881 8 C 0.552 3.448 9 O -0.536 6.536 10 N -0.609 5.609 11 C 0.103 3.897 12 C -0.139 4.139 13 C -0.109 4.109 14 C 0.115 3.885 15 H 0.067 0.933 16 C 0.148 3.852 17 N -0.607 5.607 18 C 0.171 3.829 19 C -0.242 4.242 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.918 5.918 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.038 0.962 43 H -0.007 1.007 44 H 0.044 0.956 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.982 -18.683 -8.989 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.139 4.139 4 H 0.136 0.864 5 C -0.187 4.187 6 C -0.206 4.206 7 H 0.136 0.864 8 C 0.340 3.660 9 O -0.413 6.413 10 N -0.343 5.343 11 C -0.021 4.021 12 C -0.177 4.177 13 C -0.147 4.147 14 C 0.010 3.990 15 H 0.086 0.914 16 C 0.019 3.981 17 N -0.330 5.330 18 C 0.027 3.973 19 C -0.371 4.371 20 H 0.092 0.908 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.011 0.989 44 H 0.062 0.938 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.466 -18.099 -8.582 20.763 hybrid contribution 1.195 0.422 -0.077 1.270 sum -4.271 -17.677 -8.659 20.142 Atomic orbital electron populations 1.21740 0.95235 1.01467 1.02245 1.21139 0.96232 0.93780 1.01937 1.22474 0.91714 0.98522 1.01198 0.86393 1.23078 1.02228 1.03119 0.90258 1.22293 0.97230 0.99009 1.02025 0.86358 1.19213 0.80896 0.85463 0.80387 1.90705 1.53015 1.48424 1.49181 1.48644 1.04600 1.32584 1.48483 1.22273 0.87424 0.95641 0.96721 1.22849 0.97015 0.98477 0.99374 1.22581 0.94666 0.94138 1.03286 1.22707 0.92777 0.88720 0.94820 0.91444 1.21043 0.97929 0.86212 0.92897 1.44000 1.16235 1.40526 1.32241 1.21029 0.89400 0.96203 0.90711 1.19277 0.91260 1.09679 1.16873 0.90838 1.24882 0.98472 0.98642 0.98286 1.70235 1.36745 1.27929 1.21663 0.86304 0.83465 0.79216 0.77372 1.21280 1.21711 1.21227 0.92420 0.92528 0.92762 0.91814 0.91537 0.88255 0.88080 0.91352 0.91541 0.91191 0.90338 0.90270 0.89994 0.92678 0.94222 0.94399 0.98858 0.93780 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.87 37.16 0.37 -0.78 16 2 C -0.09 -0.78 6.22 -26.73 -0.17 -0.95 16 3 C -0.12 -1.32 5.25 -90.62 -0.48 -1.80 16 4 H 0.12 1.55 7.60 -51.93 -0.39 1.15 16 5 C -0.15 -1.53 9.88 -26.73 -0.26 -1.79 16 6 C -0.18 -2.20 5.22 -91.77 -0.48 -2.68 16 7 H 0.12 1.16 7.10 -51.93 -0.37 0.79 16 8 C 0.55 9.18 7.45 -10.98 -0.08 9.09 16 9 O -0.54 -11.13 15.04 5.56 0.08 -11.05 16 10 N -0.61 -9.78 3.06 -163.02 -0.50 -10.28 16 11 C 0.10 1.23 6.74 -2.53 -0.02 1.22 16 12 C -0.14 -1.71 7.09 -24.58 -0.17 -1.88 16 13 C -0.11 -1.84 5.49 -24.90 -0.14 -1.97 16 14 C 0.11 2.20 3.14 -66.95 -0.21 1.99 16 15 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 16 C 0.15 3.33 5.17 -4.04 -0.02 3.31 16 17 N -0.61 -15.94 2.90 -181.11 -0.53 -16.47 16 18 C 0.17 4.62 8.98 59.85 0.54 5.15 16 19 C -0.24 -6.62 8.88 -15.06 -0.13 -6.75 16 20 H 0.07 1.91 6.57 -52.48 -0.35 1.56 16 21 C -0.01 -0.19 5.46 -17.43 -0.10 -0.29 16 22 N -0.92 -27.27 9.44 55.49 0.52 -26.75 16 23 Si 0.91 22.07 29.56 -169.99 -5.02 17.05 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.45 7.88 -51.93 -0.41 0.05 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 34 H 0.07 0.65 6.95 -51.93 -0.36 0.29 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.42 6.47 -51.93 -0.34 1.08 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.05 1.32 6.29 -51.93 -0.33 0.99 16 41 H 0.04 0.88 7.91 -51.93 -0.41 0.47 16 42 H 0.04 1.10 7.07 -51.93 -0.37 0.73 16 43 H -0.01 -0.18 7.80 -51.93 -0.40 -0.59 16 44 H 0.04 1.26 7.01 -51.93 -0.36 0.90 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -31.93 352.58 -9.35 -41.28 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.87 Total: -0.96 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.35 Total: 1.87 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.50 Total: -53.50 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.93 -9.35 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570539926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.445 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds