Wall clock time and date at job start Tue Mar 31 2020 02:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47258 * 2 1 4 4 H 1.09002 * 115.56086 * 29.30459 * 3 2 1 5 5 C 1.53000 * 117.49931 * 243.62665 * 3 2 1 6 6 C 1.52997 * 117.49919 * 175.00113 * 3 2 1 7 7 H 1.08999 * 117.51655 * 0.02562 * 6 3 2 8 8 C 1.50696 * 117.49703 * 214.97670 * 6 3 2 9 9 O 1.21279 * 120.00159 * 359.97438 * 8 6 3 10 10 N 1.34784 * 120.00058 * 179.97438 * 8 6 3 11 11 C 1.47424 * 125.64641 * 5.14858 * 10 8 6 12 12 C 1.54912 * 104.83239 * 204.16376 * 11 10 8 13 13 C 1.55153 * 101.57848 * 322.98985 * 12 11 10 14 14 C 1.47020 * 125.65066 * 185.19039 * 10 8 6 15 15 H 1.08992 * 109.88414 * 59.32825 * 14 10 8 16 16 C 1.53006 * 109.87871 * 298.32289 * 14 10 8 17 17 N 1.46501 * 109.46874 * 173.82152 * 16 14 10 18 18 C 1.46500 * 120.00020 * 267.61988 * 17 16 14 19 19 C 1.36931 * 120.00085 * 87.62531 * 17 16 14 20 20 H 1.08004 * 120.00229 * 353.58263 * 19 17 16 21 21 C 1.38817 * 120.00300 * 173.86459 * 19 17 16 22 22 N 1.31617 * 119.99676 * 5.00458 * 21 19 17 23 23 Si 1.86797 * 120.00124 * 185.01102 * 21 19 17 24 24 H 1.48501 * 109.47256 * 59.99536 * 23 21 19 25 25 H 1.48499 * 109.46718 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47011 * 299.99362 * 23 21 19 27 27 H 1.08998 * 109.46798 * 300.00162 * 1 2 3 28 28 H 1.09000 * 109.47273 * 60.00115 * 1 2 3 29 29 H 1.08998 * 109.47278 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46868 * 240.00390 * 2 1 3 31 31 H 1.08993 * 109.47137 * 120.00288 * 2 1 3 32 32 H 1.09001 * 117.50014 * 145.01906 * 5 3 2 33 33 H 1.09000 * 117.51985 * 359.97438 * 5 3 2 34 34 H 1.09000 * 110.36684 * 323.00224 * 11 10 8 35 35 H 1.08995 * 110.36656 * 85.32312 * 11 10 8 36 36 H 1.09004 * 111.00197 * 81.06073 * 12 11 10 37 37 H 1.08995 * 111.00271 * 204.91751 * 12 11 10 38 38 H 1.08998 * 110.72412 * 277.13677 * 13 12 11 39 39 H 1.09001 * 110.72035 * 153.86414 * 13 12 11 40 40 H 1.08998 * 109.47112 * 53.82373 * 16 14 10 41 41 H 1.09003 * 109.46989 * 293.81586 * 16 14 10 42 42 H 1.08997 * 109.47240 * 244.08507 * 18 17 16 43 43 H 1.09007 * 109.47026 * 4.08974 * 18 17 16 44 44 H 1.09002 * 109.46776 * 124.08789 * 18 17 16 45 45 H 0.97005 * 120.00283 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8440 1.9076 -1.2159 6 6 3.5502 1.6578 0.1183 7 1 4.1806 0.7721 0.1956 8 6 4.0228 2.8620 0.8913 9 8 3.2158 3.6169 1.3909 10 7 5.3425 3.0999 1.0275 11 6 6.4248 2.3308 0.3869 12 6 7.6609 2.5551 1.2934 13 6 7.4734 4.0365 1.7146 14 6 5.9411 4.1690 1.8402 15 1 5.6408 4.0551 2.8817 16 6 5.4921 5.5344 1.3158 17 7 5.9716 6.5853 2.2170 18 6 5.1203 7.0553 3.3127 19 6 7.2154 7.1282 2.0351 20 1 7.8831 6.7126 1.2948 21 6 7.6206 8.2091 2.8061 22 7 6.8500 8.6498 3.7779 23 14 9.2591 9.0383 2.4643 24 1 9.2674 9.5649 1.0758 25 1 9.4557 10.1585 3.4192 26 1 10.3567 8.0512 2.6259 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.7212 2.9428 -1.5344 33 1 3.0100 1.1860 -2.0158 34 1 6.1679 1.2721 0.3509 35 1 6.6167 2.7098 -0.6169 36 1 7.6339 1.8957 2.1610 37 1 8.5859 2.4225 0.7324 38 1 7.8568 4.7075 0.9460 39 1 7.9569 4.2292 2.6724 40 1 4.4036 5.5654 1.2683 41 1 5.9041 5.6944 0.3194 42 1 4.8677 8.1035 3.1526 43 1 4.2065 6.4618 3.3432 44 1 5.6535 6.9504 4.2576 45 1 7.1329 9.4054 4.3165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570539926.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:57 Heat of formation + Delta-G solvation = -5.213769 kcal Electronic energy + Delta-G solvation = -22762.082476 eV Core-core repulsion = 19587.333753 eV Total energy + Delta-G solvation = -3174.748723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37893 -39.30427 -37.65763 -37.16775 -33.56767 -32.97951 -32.35039 -30.61952 -28.05498 -26.79677 -25.97059 -24.63247 -23.43182 -22.84064 -21.73428 -21.12990 -19.70478 -18.88566 -18.23544 -17.40422 -16.78021 -16.33149 -15.77203 -15.51091 -15.34581 -15.19396 -15.05178 -14.59740 -14.26579 -14.04600 -13.83788 -13.54708 -13.33337 -13.23873 -12.97051 -12.85404 -12.76526 -12.62814 -12.33248 -12.21597 -12.11505 -12.00338 -11.90028 -11.88544 -11.52143 -11.48600 -11.21444 -10.93310 -10.69131 -10.64466 -9.73719 -8.90040 -7.72863 -5.19070 1.46902 1.50260 1.51928 1.56967 1.96542 2.53010 2.87923 3.35382 3.44614 3.65706 3.75893 3.82601 3.85730 3.91910 4.05409 4.17795 4.29341 4.34984 4.46484 4.49396 4.51162 4.59165 4.73104 4.74638 4.79503 4.86865 4.94579 4.95589 5.03382 5.09352 5.12563 5.16798 5.18924 5.25503 5.31822 5.39805 5.44469 5.50912 5.52043 5.61813 5.76645 6.27841 6.63970 7.15327 7.21394 7.85869 8.30283 9.26809 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028745 B = 0.003948 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.852322 B = 7089.838455 C = 7707.288585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 C -0.126 4.126 4 H 0.084 0.916 5 C -0.132 4.132 6 C -0.185 4.185 7 H 0.153 0.847 8 C 0.541 3.459 9 O -0.592 6.592 10 N -0.610 5.610 11 C 0.100 3.900 12 C -0.124 4.124 13 C -0.107 4.107 14 C 0.124 3.876 15 H 0.033 0.967 16 C 0.154 3.846 17 N -0.621 5.621 18 C 0.193 3.807 19 C -0.244 4.244 20 H 0.089 0.911 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.977 3.023 24 H -0.279 1.279 25 H -0.299 1.299 26 H -0.270 1.270 27 H 0.042 0.958 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.032 0.968 41 H 0.044 0.956 42 H 0.012 0.988 43 H 0.000 1.000 44 H 0.022 0.978 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 -21.918 -11.539 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.145 4.145 4 H 0.102 0.898 5 C -0.170 4.170 6 C -0.206 4.206 7 H 0.170 0.830 8 C 0.331 3.669 9 O -0.474 6.474 10 N -0.343 5.343 11 C -0.022 4.022 12 C -0.161 4.161 13 C -0.145 4.145 14 C 0.018 3.982 15 H 0.051 0.949 16 C 0.027 3.973 17 N -0.346 5.346 18 C 0.048 3.952 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.805 3.195 24 H -0.205 1.205 25 H -0.226 1.226 26 H -0.196 1.196 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.018 0.982 44 H 0.040 0.960 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.707 -21.401 -11.183 24.429 hybrid contribution 0.561 1.429 0.701 1.687 sum -3.146 -19.971 -10.482 22.773 Atomic orbital electron populations 1.21754 0.95163 1.02301 1.01621 1.21141 0.96270 0.91759 1.03184 1.22501 0.90766 0.99649 1.01554 0.89754 1.23187 1.00332 1.03088 0.90356 1.22299 0.98113 0.97644 1.02511 0.82955 1.20198 0.80509 0.86268 0.79899 1.90680 1.54511 1.50660 1.51510 1.48719 1.05573 1.31978 1.48024 1.22605 0.85538 0.97295 0.96734 1.22848 0.98693 0.94461 1.00131 1.22446 0.92079 0.97903 1.02082 1.22182 0.94782 0.87997 0.93269 0.94911 1.21044 0.96480 0.87311 0.92500 1.44188 1.16105 1.41871 1.32408 1.20635 0.89486 0.94779 0.90296 1.19680 0.91580 1.09447 1.16638 0.89314 1.25769 1.02369 0.99562 0.98373 1.70448 1.38727 1.28300 1.22801 0.85180 0.79443 0.77876 0.77010 1.20466 1.22587 1.19582 0.93873 0.92459 0.91134 0.89382 0.91311 0.90185 0.84281 0.87471 0.90035 0.90339 0.87161 0.91142 0.92020 0.94957 0.93786 0.96937 0.98196 0.95964 0.94725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.87 71.98 0.71 -1.36 16 2 C -0.09 -1.20 6.22 30.60 0.19 -1.01 16 3 C -0.13 -2.59 5.25 -10.79 -0.06 -2.64 16 4 H 0.08 2.32 7.60 -2.39 -0.02 2.30 16 5 C -0.13 -2.35 9.88 30.60 0.30 -2.05 16 6 C -0.19 -3.94 5.22 -11.54 -0.06 -4.00 16 7 H 0.15 2.21 7.10 -2.39 -0.02 2.19 16 8 C 0.54 17.84 7.45 87.65 0.65 18.49 16 9 O -0.59 -25.90 15.04 -3.02 -0.05 -25.94 16 10 N -0.61 -18.92 3.06 -788.07 -2.42 -21.34 16 11 C 0.10 1.98 6.74 86.86 0.59 2.57 16 12 C -0.12 -2.58 7.09 31.99 0.23 -2.35 16 13 C -0.11 -3.51 5.49 31.78 0.17 -3.34 16 14 C 0.12 4.83 3.14 45.34 0.14 4.98 16 15 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 16 C 0.15 7.18 5.17 86.38 0.45 7.63 16 17 N -0.62 -33.91 2.90 -726.91 -2.11 -36.02 16 18 C 0.19 11.05 8.98 127.77 1.15 12.20 16 19 C -0.24 -13.56 8.88 84.04 0.75 -12.82 16 20 H 0.09 4.56 6.57 -2.91 -0.02 4.54 16 21 C -0.07 -3.93 5.46 84.86 0.46 -3.47 16 22 N -0.95 -58.69 9.44 21.65 0.20 -58.49 16 23 Si 0.98 45.71 29.56 68.60 2.03 47.74 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.83 7.88 -2.39 -0.02 0.81 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.14 1.45 8.03 -2.39 -0.02 1.43 16 34 H 0.11 1.39 6.95 -2.39 -0.02 1.38 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 2.43 6.47 -2.39 -0.02 2.42 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.03 1.63 6.29 -2.39 -0.02 1.62 16 41 H 0.04 1.98 7.91 -2.39 -0.02 1.96 16 42 H 0.01 0.75 7.07 -2.39 -0.02 0.74 16 43 H 0.00 -0.03 7.80 -2.38 -0.02 -0.05 16 44 H 0.02 1.34 7.01 -2.39 -0.02 1.32 16 45 H 0.24 14.61 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -74.52 352.58 4.28 -70.24 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.95 Total: 10.99 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 5.67 Total: 12.82 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -4.32 Total: -115.85 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.94 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -74.52 4.28 -70.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570539926.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.029 kcal (2) G-P(sol) polarization free energy of solvation -74.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds