Wall clock time and date at job start Tue Mar 31 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47225 * 2 1 4 4 H 1.08997 * 115.54970 * 29.32917 * 3 2 1 5 5 C 1.53004 * 117.49800 * 243.62548 * 3 2 1 6 6 C 1.53002 * 117.50175 * 175.00182 * 3 2 1 7 7 H 1.08998 * 117.49578 * 359.97006 * 6 3 2 8 8 C 1.50702 * 117.49834 * 214.98131 * 6 3 2 9 9 O 1.21284 * 119.99791 * 359.97438 * 8 6 3 10 10 N 1.34779 * 120.00001 * 179.97438 * 8 6 3 11 11 C 1.47422 * 125.64691 * 4.71950 * 10 8 6 12 12 C 1.54910 * 104.83135 * 155.90632 * 11 10 8 13 13 C 1.55405 * 101.66176 * 36.92906 * 12 11 10 14 14 C 1.47019 * 125.64684 * 184.76811 * 10 8 6 15 15 H 1.08999 * 109.87897 * 300.58983 * 14 10 8 16 16 C 1.53000 * 109.88539 * 61.60295 * 14 10 8 17 17 N 1.46499 * 109.46908 * 185.43381 * 16 14 10 18 18 C 1.46499 * 120.00054 * 84.70837 * 17 16 14 19 19 C 1.36938 * 119.99809 * 264.70525 * 17 16 14 20 20 H 1.08000 * 119.99925 * 353.73282 * 19 17 16 21 21 C 1.38815 * 120.00069 * 173.73134 * 19 17 16 22 22 N 1.31615 * 119.99574 * 5.21969 * 21 19 17 23 23 Si 1.86799 * 119.99914 * 185.21802 * 21 19 17 24 24 H 1.48491 * 109.46832 * 90.00329 * 23 21 19 25 25 H 1.48501 * 109.46759 * 209.99972 * 23 21 19 26 26 H 1.48492 * 109.47232 * 329.99821 * 23 21 19 27 27 H 1.08998 * 109.47000 * 60.00082 * 1 2 3 28 28 H 1.08994 * 109.46691 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46911 * 300.00124 * 1 2 3 30 30 H 1.08997 * 109.47198 * 240.00152 * 2 1 3 31 31 H 1.08995 * 109.47617 * 119.99513 * 2 1 3 32 32 H 1.08993 * 117.49751 * 145.02012 * 5 3 2 33 33 H 1.08996 * 117.50144 * 359.97438 * 5 3 2 34 34 H 1.08997 * 110.37086 * 274.74632 * 11 10 8 35 35 H 1.09009 * 110.36479 * 36.96501 * 11 10 8 36 36 H 1.09000 * 111.00290 * 155.08335 * 12 11 10 37 37 H 1.08992 * 111.00665 * 278.90412 * 12 11 10 38 38 H 1.09004 * 110.85444 * 206.29770 * 13 12 11 39 39 H 1.09001 * 110.69835 * 82.95268 * 13 12 11 40 40 H 1.09002 * 109.46840 * 65.43216 * 16 14 10 41 41 H 1.09005 * 109.46937 * 305.42967 * 16 14 10 42 42 H 1.08999 * 109.46883 * 4.46151 * 18 17 16 43 43 H 1.09004 * 109.46681 * 124.45810 * 18 17 16 44 44 H 1.08996 * 109.47391 * 244.45826 * 18 17 16 45 45 H 0.97006 * 120.00117 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8440 1.9076 -1.2159 6 6 3.5502 1.6580 0.1182 7 1 4.1803 0.7720 0.1965 8 6 4.0229 2.8621 0.8914 9 8 3.2157 3.6170 1.3911 10 7 5.3425 3.1001 1.0276 11 6 6.4250 2.3255 0.3940 12 6 7.6262 3.3017 0.3303 13 6 7.4720 4.0772 1.6682 14 6 5.9407 4.1745 1.8334 15 1 5.5903 5.1434 1.4778 16 6 5.5634 3.9929 3.3050 17 7 6.0538 5.1358 4.0793 18 6 5.2540 6.3603 4.1645 19 6 7.2597 5.0595 4.7235 20 1 7.8019 4.1257 4.7459 21 6 7.7854 6.1824 5.3479 22 7 7.0799 7.2917 5.4098 23 14 9.4940 6.1188 6.1002 24 1 10.4981 6.5205 5.0826 25 1 9.5609 7.0490 7.2558 26 1 9.7812 4.7364 6.5603 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.7213 2.9427 -1.5344 33 1 3.0099 1.1858 -2.0156 34 1 6.6749 1.4557 1.0014 35 1 6.1326 2.0155 -0.6093 36 1 8.5704 2.7579 0.2999 37 1 7.5378 3.9750 -0.5222 38 1 7.9157 5.0701 1.5946 39 1 7.9138 3.5163 2.4918 40 1 6.0141 3.0762 3.6851 41 1 4.4791 3.9301 3.3970 42 1 4.3001 6.2070 3.6598 43 1 5.0758 6.6057 5.2114 44 1 5.7910 7.1790 3.6856 45 1 7.4470 8.0763 5.8464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570539927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:02 Heat of formation + Delta-G solvation = 11.887174 kcal Electronic energy + Delta-G solvation = -22768.910527 eV Core-core repulsion = 19594.903357 eV Total energy + Delta-G solvation = -3174.007170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.09928 -38.10543 -36.43717 -35.25634 -32.29162 -31.47585 -31.15141 -28.94775 -25.87918 -25.25993 -24.71379 -23.86962 -22.15161 -21.19251 -20.67656 -19.81244 -18.47718 -16.99985 -16.82583 -16.02542 -15.30796 -14.84865 -14.67796 -14.53789 -13.99099 -13.64166 -13.46608 -13.00474 -12.81242 -12.69334 -12.65127 -12.33875 -12.25418 -11.99879 -11.70218 -11.49336 -11.17952 -11.09252 -10.91883 -10.86066 -10.73049 -10.38513 -10.37016 -10.24180 -10.09747 -10.07063 -9.76478 -9.70777 -9.39307 -8.54367 -8.27380 -6.81033 -5.57046 -2.99875 2.71295 3.21029 3.40966 3.46265 3.48397 3.79328 4.41539 4.55275 4.66550 4.69368 4.82859 4.94213 5.04860 5.16570 5.18022 5.23955 5.29899 5.48263 5.50267 5.57244 5.65038 5.71633 5.74718 5.76671 5.83963 5.86611 5.93174 5.96945 6.01483 6.12865 6.25154 6.38092 6.46905 6.61852 6.70470 6.88179 6.96725 7.05355 7.74057 7.79220 7.89392 8.03226 8.44308 8.51614 9.33916 9.97492 10.42622 11.41913 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.003998 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.661743 B = 7002.252954 C = 7565.833519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.119 4.119 4 H 0.118 0.882 5 C -0.151 4.151 6 C -0.184 4.184 7 H 0.119 0.881 8 C 0.553 3.447 9 O -0.537 6.537 10 N -0.609 5.609 11 C 0.102 3.898 12 C -0.138 4.138 13 C -0.106 4.106 14 C 0.114 3.886 15 H 0.067 0.933 16 C 0.150 3.850 17 N -0.606 5.606 18 C 0.170 3.830 19 C -0.240 4.240 20 H 0.073 0.927 21 C -0.006 4.006 22 N -0.917 5.917 23 Si 0.905 3.095 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.046 0.954 42 H -0.007 1.007 43 H 0.046 0.954 44 H 0.036 0.964 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.390 -14.131 -14.621 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.138 4.138 4 H 0.136 0.864 5 C -0.188 4.188 6 C -0.205 4.205 7 H 0.137 0.863 8 C 0.341 3.659 9 O -0.415 6.415 10 N -0.343 5.343 11 C -0.021 4.021 12 C -0.176 4.176 13 C -0.144 4.144 14 C 0.009 3.991 15 H 0.085 0.915 16 C 0.021 3.979 17 N -0.329 5.329 18 C 0.026 3.974 19 C -0.370 4.370 20 H 0.090 0.910 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.736 3.264 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.012 0.988 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.861 -13.553 -14.229 20.505 hybrid contribution 1.228 0.059 0.366 1.283 sum -4.633 -13.494 -13.863 19.893 Atomic orbital electron populations 1.21739 0.95243 1.01490 1.02210 1.21143 0.96224 0.93751 1.02008 1.22473 0.91743 0.98575 1.01001 0.86399 1.23070 1.02491 1.02965 0.90323 1.22301 0.97313 0.99043 1.01815 0.86290 1.19213 0.80892 0.85469 0.80340 1.90707 1.53024 1.48509 1.49217 1.48650 1.04560 1.32587 1.48521 1.22263 0.87649 0.94897 0.97312 1.22876 0.97225 0.98233 0.99287 1.22559 0.94602 1.01466 0.95802 1.22698 0.92829 0.89475 0.94098 0.91459 1.21028 0.97579 0.91025 0.88227 1.43997 1.21025 1.12084 1.55813 1.21018 0.89378 0.87149 0.99815 1.19299 0.95346 0.95399 1.26929 0.90951 1.24875 0.98379 0.95959 1.01008 1.70248 1.35572 1.02295 1.48340 0.86223 0.84603 0.77121 0.78467 1.21637 1.21825 1.20768 0.92584 0.92741 0.92394 0.91825 0.91419 0.88418 0.88087 0.91711 0.91218 0.90336 0.91217 0.90069 0.90227 0.93783 0.93559 0.98842 0.93533 0.94580 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.87 37.16 0.37 -0.81 16 2 C -0.09 -0.80 6.22 -26.73 -0.17 -0.97 16 3 C -0.12 -1.32 5.25 -90.61 -0.48 -1.79 16 4 H 0.12 1.55 7.60 -51.93 -0.39 1.16 16 5 C -0.15 -1.51 9.88 -26.73 -0.26 -1.78 16 6 C -0.18 -2.21 5.00 -91.77 -0.46 -2.66 16 7 H 0.12 1.20 7.87 -51.93 -0.41 0.79 16 8 C 0.55 9.23 7.36 -10.98 -0.08 9.15 16 9 O -0.54 -11.21 15.42 5.55 0.09 -11.13 16 10 N -0.61 -9.84 3.07 -163.02 -0.50 -10.34 16 11 C 0.10 1.23 6.48 -2.53 -0.02 1.22 16 12 C -0.14 -1.72 7.09 -24.45 -0.17 -1.89 16 13 C -0.11 -1.82 5.78 -24.76 -0.14 -1.96 16 14 C 0.11 2.20 3.08 -66.95 -0.21 1.99 16 15 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 16 C 0.15 3.37 5.09 -4.04 -0.02 3.35 16 17 N -0.61 -15.85 2.83 -181.12 -0.51 -16.36 16 18 C 0.17 4.59 9.00 59.85 0.54 5.13 16 19 C -0.24 -6.58 8.88 -15.06 -0.13 -6.72 16 20 H 0.07 1.90 7.58 -52.49 -0.40 1.51 16 21 C -0.01 -0.17 5.46 -17.43 -0.10 -0.27 16 22 N -0.92 -27.09 9.45 55.49 0.52 -26.56 16 23 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.68 7.78 -51.92 -0.40 0.28 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.08 1.44 7.24 -51.93 -0.38 1.06 16 40 H 0.04 0.96 7.83 -51.93 -0.41 0.56 16 41 H 0.05 1.11 6.72 -51.93 -0.35 0.76 16 42 H -0.01 -0.18 7.84 -51.93 -0.41 -0.59 16 43 H 0.05 1.34 6.99 -51.93 -0.36 0.98 16 44 H 0.04 1.02 7.10 -51.93 -0.37 0.66 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -31.82 356.25 -9.45 -41.27 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -8.06 Total: -1.18 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.33 Total: 1.99 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.49 Total: -53.26 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.82 -9.45 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570539927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.159 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds