Wall clock time and date at job start Tue Mar 31 2020 02:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47225 * 2 1 4 4 H 1.08997 * 115.54970 * 29.32917 * 3 2 1 5 5 C 1.53004 * 117.49800 * 243.62548 * 3 2 1 6 6 C 1.53002 * 117.50175 * 175.00182 * 3 2 1 7 7 H 1.08998 * 117.49578 * 359.97006 * 6 3 2 8 8 C 1.50702 * 117.49834 * 214.98131 * 6 3 2 9 9 O 1.21284 * 119.99791 * 359.97438 * 8 6 3 10 10 N 1.34779 * 120.00001 * 179.97438 * 8 6 3 11 11 C 1.47422 * 125.64691 * 4.71950 * 10 8 6 12 12 C 1.54910 * 104.83135 * 155.90632 * 11 10 8 13 13 C 1.55405 * 101.66176 * 36.92906 * 12 11 10 14 14 C 1.47019 * 125.64684 * 184.76811 * 10 8 6 15 15 H 1.08999 * 109.87897 * 300.58983 * 14 10 8 16 16 C 1.53000 * 109.88539 * 61.60295 * 14 10 8 17 17 N 1.46499 * 109.46908 * 185.43381 * 16 14 10 18 18 C 1.46499 * 120.00054 * 84.70837 * 17 16 14 19 19 C 1.36938 * 119.99809 * 264.70525 * 17 16 14 20 20 H 1.08000 * 119.99925 * 353.73282 * 19 17 16 21 21 C 1.38815 * 120.00069 * 173.73134 * 19 17 16 22 22 N 1.31615 * 119.99574 * 5.21969 * 21 19 17 23 23 Si 1.86799 * 119.99914 * 185.21802 * 21 19 17 24 24 H 1.48491 * 109.46832 * 90.00329 * 23 21 19 25 25 H 1.48501 * 109.46759 * 209.99972 * 23 21 19 26 26 H 1.48492 * 109.47232 * 329.99821 * 23 21 19 27 27 H 1.08998 * 109.47000 * 60.00082 * 1 2 3 28 28 H 1.08994 * 109.46691 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46911 * 300.00124 * 1 2 3 30 30 H 1.08997 * 109.47198 * 240.00152 * 2 1 3 31 31 H 1.08995 * 109.47617 * 119.99513 * 2 1 3 32 32 H 1.08993 * 117.49751 * 145.02012 * 5 3 2 33 33 H 1.08996 * 117.50144 * 359.97438 * 5 3 2 34 34 H 1.08997 * 110.37086 * 274.74632 * 11 10 8 35 35 H 1.09009 * 110.36479 * 36.96501 * 11 10 8 36 36 H 1.09000 * 111.00290 * 155.08335 * 12 11 10 37 37 H 1.08992 * 111.00665 * 278.90412 * 12 11 10 38 38 H 1.09004 * 110.85444 * 206.29770 * 13 12 11 39 39 H 1.09001 * 110.69835 * 82.95268 * 13 12 11 40 40 H 1.09002 * 109.46840 * 65.43216 * 16 14 10 41 41 H 1.09005 * 109.46937 * 305.42967 * 16 14 10 42 42 H 1.08999 * 109.46883 * 4.46151 * 18 17 16 43 43 H 1.09004 * 109.46681 * 124.45810 * 18 17 16 44 44 H 1.08996 * 109.47391 * 244.45826 * 18 17 16 45 45 H 0.97006 * 120.00117 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8440 1.9076 -1.2159 6 6 3.5502 1.6580 0.1182 7 1 4.1803 0.7720 0.1965 8 6 4.0229 2.8621 0.8914 9 8 3.2157 3.6170 1.3911 10 7 5.3425 3.1001 1.0276 11 6 6.4250 2.3255 0.3940 12 6 7.6262 3.3017 0.3303 13 6 7.4720 4.0772 1.6682 14 6 5.9407 4.1745 1.8334 15 1 5.5903 5.1434 1.4778 16 6 5.5634 3.9929 3.3050 17 7 6.0538 5.1358 4.0793 18 6 5.2540 6.3603 4.1645 19 6 7.2597 5.0595 4.7235 20 1 7.8019 4.1257 4.7459 21 6 7.7854 6.1824 5.3479 22 7 7.0799 7.2917 5.4098 23 14 9.4940 6.1188 6.1002 24 1 10.4981 6.5205 5.0826 25 1 9.5609 7.0490 7.2558 26 1 9.7812 4.7364 6.5603 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 2.7213 2.9427 -1.5344 33 1 3.0099 1.1858 -2.0156 34 1 6.6749 1.4557 1.0014 35 1 6.1326 2.0155 -0.6093 36 1 8.5704 2.7579 0.2999 37 1 7.5378 3.9750 -0.5222 38 1 7.9157 5.0701 1.5946 39 1 7.9138 3.5163 2.4918 40 1 6.0141 3.0762 3.6851 41 1 4.4791 3.9301 3.3970 42 1 4.3001 6.2070 3.6598 43 1 5.0758 6.6057 5.2114 44 1 5.7910 7.1790 3.6856 45 1 7.4470 8.0763 5.8464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570539927.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:01 Heat of formation + Delta-G solvation = -6.248207 kcal Electronic energy + Delta-G solvation = -22769.696936 eV Core-core repulsion = 19594.903357 eV Total energy + Delta-G solvation = -3174.793579 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36749 -39.29822 -37.65953 -37.17182 -33.57271 -32.98232 -32.34354 -30.60638 -28.08022 -26.77950 -25.98849 -24.63574 -23.47050 -22.84018 -21.67494 -21.09191 -19.74564 -18.91943 -18.14194 -17.49430 -16.78200 -16.33000 -15.74638 -15.54316 -15.39337 -15.19254 -15.05568 -14.61190 -14.22650 -14.00734 -13.80508 -13.56346 -13.34615 -13.25687 -12.96733 -12.84436 -12.74742 -12.67037 -12.32221 -12.18476 -12.06345 -12.02183 -11.90816 -11.89061 -11.56505 -11.52814 -11.20736 -10.96254 -10.71822 -10.66617 -9.73104 -8.92129 -7.73643 -5.19817 1.47380 1.48744 1.50984 1.58199 1.97517 2.52541 2.87182 3.34315 3.45014 3.65550 3.75479 3.82746 3.83909 3.92875 4.05794 4.22271 4.29710 4.32840 4.47401 4.47593 4.51164 4.58737 4.72450 4.74163 4.78623 4.84924 4.95206 4.96498 4.99474 5.08617 5.11349 5.16891 5.19250 5.25442 5.31668 5.40677 5.46989 5.47622 5.51801 5.60359 5.75880 6.26921 6.63947 7.14287 7.21137 7.84687 8.28952 9.25995 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026797 B = 0.003998 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.661743 B = 7002.252954 C = 7565.833519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.127 4.127 4 H 0.084 0.916 5 C -0.129 4.129 6 C -0.186 4.186 7 H 0.151 0.849 8 C 0.541 3.459 9 O -0.594 6.594 10 N -0.610 5.610 11 C 0.099 3.901 12 C -0.123 4.123 13 C -0.104 4.104 14 C 0.124 3.876 15 H 0.030 0.970 16 C 0.157 3.843 17 N -0.620 5.620 18 C 0.193 3.807 19 C -0.244 4.244 20 H 0.085 0.915 21 C -0.065 4.065 22 N -0.951 5.951 23 Si 0.977 3.023 24 H -0.283 1.283 25 H -0.300 1.300 26 H -0.266 1.266 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.023 0.977 42 H -0.001 1.001 43 H 0.021 0.979 44 H 0.014 0.986 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 -17.582 -16.866 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.146 4.146 4 H 0.103 0.897 5 C -0.166 4.166 6 C -0.207 4.207 7 H 0.168 0.832 8 C 0.332 3.668 9 O -0.475 6.475 10 N -0.343 5.343 11 C -0.022 4.022 12 C -0.161 4.161 13 C -0.142 4.142 14 C 0.017 3.983 15 H 0.048 0.952 16 C 0.029 3.971 17 N -0.344 5.344 18 C 0.048 3.952 19 C -0.373 4.373 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.601 5.601 23 Si 0.805 3.195 24 H -0.210 1.210 25 H -0.227 1.227 26 H -0.191 1.191 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.158 0.842 34 H 0.103 0.897 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.017 0.983 43 H 0.039 0.961 44 H 0.033 0.967 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.199 -17.070 -16.519 24.123 hybrid contribution 0.618 1.133 1.066 1.674 sum -3.581 -15.937 -15.454 22.487 Atomic orbital electron populations 1.21751 0.95123 1.02294 1.01637 1.21145 0.96309 0.91838 1.03141 1.22501 0.90759 0.99624 1.01676 0.89744 1.23193 1.00077 1.03163 0.90216 1.22298 0.98164 0.97600 1.02655 0.83174 1.20196 0.80489 0.86239 0.79862 1.90681 1.54523 1.50755 1.51563 1.48718 1.05541 1.32055 1.47996 1.22598 0.85759 0.94591 0.99238 1.22876 0.99107 0.97921 0.96185 1.22423 0.92086 1.01000 0.98735 1.22166 0.94753 0.89196 0.92151 0.95205 1.21014 0.96031 0.89940 0.90098 1.44169 1.20948 1.12435 1.56882 1.20618 0.89433 0.87292 0.97809 1.19654 0.95427 0.95867 1.26374 0.89713 1.25737 1.02251 0.95705 1.02088 1.70453 1.37239 1.02863 1.49549 0.85106 0.79736 0.77501 0.77179 1.20962 1.22682 1.19083 0.92306 0.91183 0.93947 0.89311 0.91516 0.89955 0.84208 0.89744 0.87634 0.87076 0.90622 0.92373 0.90979 0.92993 0.95867 0.98283 0.96054 0.96742 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.87 71.98 0.71 -1.41 16 2 C -0.09 -1.25 6.22 30.60 0.19 -1.06 16 3 C -0.13 -2.62 5.25 -10.79 -0.06 -2.68 16 4 H 0.08 2.33 7.60 -2.39 -0.02 2.31 16 5 C -0.13 -2.20 9.88 30.60 0.30 -1.90 16 6 C -0.19 -4.02 5.00 -11.54 -0.06 -4.08 16 7 H 0.15 2.31 7.87 -2.39 -0.02 2.29 16 8 C 0.54 17.98 7.36 87.66 0.64 18.63 16 9 O -0.59 -26.09 15.42 -3.04 -0.05 -26.14 16 10 N -0.61 -19.08 3.07 -788.05 -2.42 -21.49 16 11 C 0.10 2.00 6.48 86.86 0.56 2.56 16 12 C -0.12 -2.64 7.09 32.07 0.23 -2.42 16 13 C -0.10 -3.49 5.78 31.87 0.18 -3.30 16 14 C 0.12 4.86 3.08 45.34 0.14 5.00 16 15 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 16 C 0.16 7.25 5.09 86.38 0.44 7.69 16 17 N -0.62 -33.67 2.83 -726.93 -2.06 -35.73 16 18 C 0.19 11.03 9.00 127.77 1.15 12.18 16 19 C -0.24 -13.53 8.88 84.03 0.75 -12.78 16 20 H 0.09 4.41 7.58 -2.91 -0.02 4.38 16 21 C -0.07 -3.73 5.46 84.86 0.46 -3.26 16 22 N -0.95 -58.21 9.45 21.65 0.20 -58.01 16 23 Si 0.98 45.47 29.56 68.60 2.03 47.49 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.86 7.87 -2.39 -0.02 0.85 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 33 H 0.14 1.35 8.03 -2.39 -0.02 1.33 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.47 7.78 -2.38 -0.02 1.45 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.07 2.51 7.24 -2.39 -0.02 2.50 16 40 H 0.05 2.29 7.83 -2.39 -0.02 2.27 16 41 H 0.02 1.16 6.72 -2.38 -0.02 1.15 16 42 H 0.00 -0.07 7.84 -2.39 -0.02 -0.09 16 43 H 0.02 1.29 6.99 -2.38 -0.02 1.28 16 44 H 0.01 0.86 7.10 -2.39 -0.02 0.85 16 45 H 0.24 14.51 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -74.20 356.25 4.29 -69.90 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.94 Total: 10.80 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: 5.65 Total: 13.17 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -4.27 Total: -115.23 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.14 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.20 4.29 -69.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570539927.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.657 kcal (2) G-P(sol) polarization free energy of solvation -74.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds