Wall clock time and date at job start Tue Mar 31 2020 02:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00034 * 2 1 4 4 C 1.53001 * 109.47194 * 89.99752 * 3 2 1 5 5 C 1.52991 * 109.47158 * 299.99820 * 4 3 2 6 6 C 1.52996 * 109.47019 * 60.00060 * 4 3 2 7 7 C 1.53001 * 109.46915 * 180.02562 * 4 3 2 8 8 N 1.46499 * 109.46907 * 179.97438 * 7 4 3 9 9 C 1.36935 * 119.99864 * 179.97438 * 8 7 4 10 10 H 1.07998 * 120.00371 * 0.02562 * 9 8 7 11 11 C 1.38820 * 120.00072 * 180.02562 * 9 8 7 12 12 N 1.31616 * 119.99747 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 119.99967 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47307 * 59.99927 * 13 11 9 15 15 H 1.48501 * 109.47002 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47278 * 299.99444 * 13 11 9 17 17 C 1.34784 * 119.99930 * 180.27048 * 2 1 3 18 18 O 1.21279 * 119.99772 * 183.43363 * 17 2 1 19 19 C 1.50700 * 119.99598 * 3.43624 * 17 2 1 20 20 C 1.54636 * 111.03492 * 259.18373 * 19 17 2 21 21 C 1.51108 * 104.72467 * 217.33720 * 20 19 17 22 22 C 1.30530 * 111.10502 * 16.43826 * 21 20 19 23 23 C 1.51099 * 111.10303 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.46758 * 93.14587 * 1 2 3 25 25 H 1.08997 * 109.47057 * 213.14766 * 1 2 3 26 26 H 1.08997 * 109.47130 * 333.14713 * 1 2 3 27 27 H 1.09001 * 109.47237 * 209.99444 * 3 2 1 28 28 H 1.09000 * 109.47047 * 329.99195 * 3 2 1 29 29 H 1.09003 * 109.47146 * 60.00204 * 5 4 3 30 30 H 1.09000 * 109.47383 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.47288 * 300.00230 * 5 4 3 32 32 H 1.08998 * 109.47731 * 59.99891 * 6 4 3 33 33 H 1.09008 * 109.47039 * 180.02562 * 6 4 3 34 34 H 1.09003 * 109.47132 * 299.99702 * 6 4 3 35 35 H 1.09001 * 109.47313 * 299.99568 * 7 4 3 36 36 H 1.08992 * 109.47481 * 59.99727 * 7 4 3 37 37 H 0.97000 * 120.00120 * 0.02562 * 8 7 4 38 38 H 0.97001 * 120.00158 * 179.97438 * 12 11 9 39 39 H 1.09000 * 110.91925 * 23.19834 * 19 17 2 40 40 H 1.08997 * 110.38630 * 336.14969 * 20 19 17 41 41 H 1.08997 * 110.38388 * 98.53189 * 20 19 17 42 42 H 1.08000 * 124.44508 * 196.45929 * 21 20 19 43 43 H 1.07991 * 124.44688 * 180.02562 * 22 21 20 44 44 H 1.09002 * 110.38531 * 224.75170 * 23 22 21 45 45 H 1.09003 * 110.48924 * 102.42009 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 6 1.1157 1.8934 2.1637 6 6 3.2793 0.6442 2.1638 7 6 3.2169 3.0358 1.4424 8 7 3.4605 3.4590 2.8236 9 6 4.1336 4.6250 3.0738 10 1 4.4845 5.2328 2.2529 11 6 4.3649 5.0259 4.3826 12 7 3.9368 4.2854 5.3830 13 14 5.2824 6.6167 4.7238 14 1 4.5390 7.7549 4.1261 15 1 5.3973 6.8170 6.1908 16 1 6.6397 6.5434 4.1260 17 6 2.1389 -1.1673 -0.0055 18 8 3.3501 -1.1685 0.0574 19 6 1.3873 -2.4707 -0.0899 20 6 1.2713 -3.1356 1.3014 21 6 1.4170 -4.6155 1.0332 22 6 1.9238 -4.8311 -0.1502 23 6 2.2010 -3.5309 -0.8684 24 1 -0.3633 -0.0564 -1.0262 25 1 -0.3633 -0.8604 0.5619 26 1 -0.3633 0.9168 0.4642 27 1 3.1500 1.1384 -0.5137 28 1 1.6085 2.0283 -0.5140 29 1 0.5706 0.9495 2.1637 30 1 1.2972 2.2086 3.1912 31 1 0.5266 2.6531 1.6497 32 1 4.2317 0.5137 1.6500 33 1 3.4606 0.9587 3.1916 34 1 2.7343 -0.2998 2.1638 35 1 4.1694 2.9058 0.9285 36 1 2.6276 3.7952 0.9287 37 1 3.1457 2.9130 3.5609 38 1 4.0987 4.5653 6.2975 39 1 0.4044 -2.3249 -0.5378 40 1 2.0702 -2.7879 1.9562 41 1 0.2977 -2.9239 1.7433 42 1 1.1382 -5.3928 1.7293 43 1 2.1192 -5.8101 -0.5620 44 1 1.8592 -3.5876 -1.9018 45 1 3.2646 -3.2950 -0.8334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570671485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:54 Heat of formation + Delta-G solvation = -8.359210 kcal Electronic energy + Delta-G solvation = -22953.351090 eV Core-core repulsion = 19778.465971 eV Total energy + Delta-G solvation = -3174.885119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.60296 -38.34259 -36.84861 -35.07231 -33.06383 -30.40742 -29.64794 -28.41788 -27.82839 -26.63343 -25.78605 -25.22902 -22.82262 -21.57396 -19.09855 -18.92411 -18.32209 -17.40000 -17.16555 -16.49148 -15.69060 -15.46255 -14.59354 -14.33821 -13.86007 -13.69192 -13.35054 -13.19806 -12.95531 -12.76492 -12.56442 -12.48901 -12.36389 -12.25064 -12.13779 -11.72595 -11.41683 -11.32693 -11.18315 -11.04022 -10.92963 -10.76165 -10.65855 -10.22590 -10.19927 -9.92753 -9.63724 -9.54298 -9.09712 -8.80345 -8.49965 -6.83399 -5.70351 -2.97632 2.03778 2.63548 3.02489 3.48037 3.52103 3.53313 4.27883 4.44302 4.55602 4.65484 4.90200 5.01852 5.03625 5.16904 5.22464 5.32728 5.38921 5.44037 5.46963 5.53871 5.58969 5.61765 5.67878 5.72911 5.78144 5.95555 5.98338 6.01792 6.17846 6.21427 6.29072 6.35441 6.49803 6.59906 6.65474 6.68370 6.79916 6.84133 7.00422 7.05437 7.42093 7.75396 8.24887 8.49302 9.60183 10.19927 10.54812 11.52790 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032640 B = 0.003553 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.626457 B = 7878.738333 C = 8086.882789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.609 5.609 3 C 0.127 3.873 4 C -0.085 4.085 5 C -0.135 4.135 6 C -0.121 4.121 7 C 0.165 3.835 8 N -0.727 5.727 9 C -0.236 4.236 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.287 1.287 17 C 0.521 3.479 18 O -0.527 6.527 19 C -0.117 4.117 20 C -0.085 4.085 21 C -0.166 4.166 22 C -0.163 4.163 23 C -0.088 4.088 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.038 0.962 35 H 0.019 0.981 36 H 0.017 0.983 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.071 0.929 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 -16.401 -12.831 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C 0.004 3.996 4 C -0.087 4.087 5 C -0.193 4.193 6 C -0.179 4.179 7 C 0.037 3.963 8 N -0.373 5.373 9 C -0.368 4.368 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.213 1.213 17 C 0.309 3.691 18 O -0.403 6.403 19 C -0.138 4.138 20 C -0.123 4.123 21 C -0.184 4.184 22 C -0.181 4.181 23 C -0.126 4.126 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.220 0.780 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.090 0.910 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.180 -16.220 -12.817 23.043 hybrid contribution 0.252 0.740 0.552 0.957 sum -9.928 -15.480 -12.265 22.105 Atomic orbital electron populations 1.21938 0.79947 1.03721 1.01417 1.47785 1.06735 1.06214 1.73401 1.21563 0.97252 0.83612 0.97133 1.21100 0.96384 0.96932 0.94258 1.21878 0.95819 0.99789 1.01792 1.21711 0.99279 0.96212 1.00670 1.20582 0.95670 0.91223 0.88825 1.42379 1.68156 1.25726 1.00996 1.19205 1.27689 0.98179 0.91714 0.91344 1.24715 1.01833 0.98969 0.95577 1.69648 1.51665 1.38971 0.98122 0.86267 0.79728 0.83417 0.76780 1.21379 1.21761 1.21335 1.20280 0.87940 0.84862 0.76057 1.90717 1.13919 1.86925 1.48751 1.22212 1.00088 0.92979 0.98561 1.21273 1.02768 0.92759 0.95489 1.23223 1.00937 0.96716 0.97520 1.23252 0.99826 0.98316 0.96732 1.21338 1.01737 0.91061 0.98431 0.92868 0.91331 0.90018 0.89948 0.90705 0.93621 0.91506 0.93306 0.92552 0.92339 0.94340 0.96351 0.96560 0.78011 0.93563 0.88493 0.89784 0.90607 0.85593 0.85665 0.91039 0.88736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 8.50 59.85 0.51 1.12 16 2 N -0.61 -7.31 2.39 -181.57 -0.43 -7.74 16 3 C 0.13 1.79 4.58 -4.04 -0.02 1.77 16 4 C -0.09 -1.45 0.60 -154.51 -0.09 -1.54 16 5 C -0.14 -2.16 7.06 37.15 0.26 -1.89 16 6 C -0.12 -2.27 6.92 37.16 0.26 -2.01 16 7 C 0.17 3.45 5.15 -4.04 -0.02 3.43 16 8 N -0.73 -18.84 5.00 -59.91 -0.30 -19.14 16 9 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 11 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 12 N -0.94 -28.78 13.06 55.49 0.72 -28.06 16 13 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 C 0.52 6.89 5.22 -10.98 -0.06 6.83 16 18 O -0.53 -8.99 13.40 5.56 0.07 -8.91 16 19 C -0.12 -1.17 2.63 -90.04 -0.24 -1.41 16 20 C -0.09 -0.84 6.37 -26.82 -0.17 -1.01 16 21 C -0.17 -1.47 10.78 -35.70 -0.38 -1.85 16 22 C -0.16 -1.43 10.77 -35.70 -0.38 -1.82 16 23 C -0.09 -0.87 6.33 -26.81 -0.17 -1.04 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.48 6.78 -51.93 -0.35 0.13 16 26 H 0.08 0.69 6.19 -51.93 -0.32 0.37 16 27 H 0.08 1.28 7.47 -51.93 -0.39 0.89 16 28 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 29 H 0.04 0.62 6.04 -51.93 -0.31 0.30 16 30 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 31 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.06 1.14 7.67 -51.93 -0.40 0.74 16 33 H 0.06 1.23 6.86 -51.92 -0.36 0.87 16 34 H 0.04 0.67 6.11 -51.93 -0.32 0.35 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.43 5.36 -40.82 -0.22 10.21 16 38 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.10 0.76 6.59 -51.93 -0.34 0.42 16 40 H 0.08 1.01 7.88 -51.93 -0.41 0.60 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.14 7.01 -51.93 -0.36 0.78 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -32.88 345.06 -7.99 -40.87 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.48 Total: 6.82 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.75 Total: -6.91 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.01 Total: -54.94 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.88 -7.99 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570671485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.512 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds