Wall clock time and date at job start Tue Mar 31 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00034 * 2 1 4 4 C 1.53001 * 109.47194 * 89.99752 * 3 2 1 5 5 C 1.52991 * 109.47158 * 299.99820 * 4 3 2 6 6 C 1.52996 * 109.47019 * 60.00060 * 4 3 2 7 7 C 1.53001 * 109.46915 * 180.02562 * 4 3 2 8 8 N 1.46499 * 109.46907 * 179.97438 * 7 4 3 9 9 C 1.36935 * 119.99864 * 179.97438 * 8 7 4 10 10 H 1.07998 * 120.00371 * 0.02562 * 9 8 7 11 11 C 1.38820 * 120.00072 * 180.02562 * 9 8 7 12 12 N 1.31616 * 119.99747 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 119.99967 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47307 * 59.99927 * 13 11 9 15 15 H 1.48501 * 109.47002 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47278 * 299.99444 * 13 11 9 17 17 C 1.34784 * 119.99930 * 180.27048 * 2 1 3 18 18 O 1.21279 * 119.99772 * 183.43363 * 17 2 1 19 19 C 1.50700 * 119.99598 * 3.43624 * 17 2 1 20 20 C 1.54636 * 111.03492 * 259.18373 * 19 17 2 21 21 C 1.51108 * 104.72467 * 217.33720 * 20 19 17 22 22 C 1.30530 * 111.10502 * 16.43826 * 21 20 19 23 23 C 1.51099 * 111.10303 * 0.02562 * 22 21 20 24 24 H 1.09002 * 109.46758 * 93.14587 * 1 2 3 25 25 H 1.08997 * 109.47057 * 213.14766 * 1 2 3 26 26 H 1.08997 * 109.47130 * 333.14713 * 1 2 3 27 27 H 1.09001 * 109.47237 * 209.99444 * 3 2 1 28 28 H 1.09000 * 109.47047 * 329.99195 * 3 2 1 29 29 H 1.09003 * 109.47146 * 60.00204 * 5 4 3 30 30 H 1.09000 * 109.47383 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.47288 * 300.00230 * 5 4 3 32 32 H 1.08998 * 109.47731 * 59.99891 * 6 4 3 33 33 H 1.09008 * 109.47039 * 180.02562 * 6 4 3 34 34 H 1.09003 * 109.47132 * 299.99702 * 6 4 3 35 35 H 1.09001 * 109.47313 * 299.99568 * 7 4 3 36 36 H 1.08992 * 109.47481 * 59.99727 * 7 4 3 37 37 H 0.97000 * 120.00120 * 0.02562 * 8 7 4 38 38 H 0.97001 * 120.00158 * 179.97438 * 12 11 9 39 39 H 1.09000 * 110.91925 * 23.19834 * 19 17 2 40 40 H 1.08997 * 110.38630 * 336.14969 * 20 19 17 41 41 H 1.08997 * 110.38388 * 98.53189 * 20 19 17 42 42 H 1.08000 * 124.44508 * 196.45929 * 21 20 19 43 43 H 1.07991 * 124.44688 * 180.02562 * 22 21 20 44 44 H 1.09002 * 110.38531 * 224.75170 * 23 22 21 45 45 H 1.09003 * 110.48924 * 102.42009 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 6 1.1157 1.8934 2.1637 6 6 3.2793 0.6442 2.1638 7 6 3.2169 3.0358 1.4424 8 7 3.4605 3.4590 2.8236 9 6 4.1336 4.6250 3.0738 10 1 4.4845 5.2328 2.2529 11 6 4.3649 5.0259 4.3826 12 7 3.9368 4.2854 5.3830 13 14 5.2824 6.6167 4.7238 14 1 4.5390 7.7549 4.1261 15 1 5.3973 6.8170 6.1908 16 1 6.6397 6.5434 4.1260 17 6 2.1389 -1.1673 -0.0055 18 8 3.3501 -1.1685 0.0574 19 6 1.3873 -2.4707 -0.0899 20 6 1.2713 -3.1356 1.3014 21 6 1.4170 -4.6155 1.0332 22 6 1.9238 -4.8311 -0.1502 23 6 2.2010 -3.5309 -0.8684 24 1 -0.3633 -0.0564 -1.0262 25 1 -0.3633 -0.8604 0.5619 26 1 -0.3633 0.9168 0.4642 27 1 3.1500 1.1384 -0.5137 28 1 1.6085 2.0283 -0.5140 29 1 0.5706 0.9495 2.1637 30 1 1.2972 2.2086 3.1912 31 1 0.5266 2.6531 1.6497 32 1 4.2317 0.5137 1.6500 33 1 3.4606 0.9587 3.1916 34 1 2.7343 -0.2998 2.1638 35 1 4.1694 2.9058 0.9285 36 1 2.6276 3.7952 0.9287 37 1 3.1457 2.9130 3.5609 38 1 4.0987 4.5653 6.2975 39 1 0.4044 -2.3249 -0.5378 40 1 2.0702 -2.7879 1.9562 41 1 0.2977 -2.9239 1.7433 42 1 1.1382 -5.3928 1.7293 43 1 2.1192 -5.8101 -0.5620 44 1 1.8592 -3.5876 -1.9018 45 1 3.2646 -3.2950 -0.8334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570671485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:53 Heat of formation + Delta-G solvation = -28.237525 kcal Electronic energy + Delta-G solvation = -22954.213079 eV Core-core repulsion = 19778.465971 eV Total energy + Delta-G solvation = -3175.747108 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.60273 -39.40104 -38.05433 -36.40454 -34.87311 -32.27941 -30.63844 -29.16188 -28.82921 -28.06430 -27.30794 -26.59336 -24.58934 -22.64882 -20.10395 -19.77373 -19.67191 -19.10275 -18.32457 -17.35425 -16.76729 -16.73444 -16.34359 -15.66204 -15.38392 -15.22782 -14.79108 -14.33458 -14.20099 -13.91879 -13.79193 -13.64964 -13.42744 -13.24970 -13.03122 -12.96689 -12.78612 -12.62718 -12.50947 -12.39024 -12.26390 -12.14174 -12.09578 -12.03911 -11.65723 -11.62892 -11.48714 -10.93099 -10.67082 -9.79786 -9.54481 -8.97793 -7.94548 -5.22552 1.35579 1.45651 1.49409 1.55353 1.64863 2.07433 2.56529 3.38283 3.47247 3.69115 3.77376 3.85655 3.93510 3.99083 4.20949 4.27177 4.37146 4.39229 4.48205 4.55649 4.58968 4.66473 4.76826 4.79280 4.82855 4.84201 4.88472 4.91109 4.93469 4.99216 5.08273 5.12977 5.16578 5.19271 5.20160 5.44011 5.48241 5.54643 5.60680 5.63222 6.00215 6.27643 6.47534 7.25612 7.34027 8.11268 8.35345 9.29066 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032640 B = 0.003553 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.626457 B = 7878.738333 C = 8086.882789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.606 5.606 3 C 0.135 3.865 4 C -0.076 4.076 5 C -0.126 4.126 6 C -0.106 4.106 7 C 0.163 3.837 8 N -0.739 5.739 9 C -0.247 4.247 10 H 0.074 0.926 11 C -0.076 4.076 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.275 1.275 15 H -0.295 1.295 16 H -0.281 1.281 17 C 0.514 3.486 18 O -0.576 6.576 19 C -0.111 4.111 20 C -0.088 4.088 21 C -0.170 4.170 22 C -0.166 4.166 23 C -0.092 4.092 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.026 0.974 34 H 0.050 0.950 35 H 0.007 0.993 36 H 0.030 0.970 37 H 0.375 0.625 38 H 0.251 0.749 39 H 0.129 0.871 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.088 0.912 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 -16.832 -14.347 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.338 5.338 3 C 0.011 3.989 4 C -0.078 4.078 5 C -0.183 4.183 6 C -0.163 4.163 7 C 0.036 3.964 8 N -0.382 5.382 9 C -0.379 4.379 10 H 0.092 0.908 11 C -0.268 4.268 12 N -0.621 5.621 13 Si 0.804 3.196 14 H -0.201 1.201 15 H -0.221 1.221 16 H -0.207 1.207 17 C 0.303 3.697 18 O -0.455 6.455 19 C -0.132 4.132 20 C -0.125 4.125 21 C -0.188 4.188 22 C -0.183 4.183 23 C -0.129 4.129 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.047 0.953 37 H 0.209 0.791 38 H 0.060 0.940 39 H 0.147 0.853 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.162 0.838 43 H 0.162 0.838 44 H 0.107 0.893 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.416 -16.651 -14.380 25.263 hybrid contribution 0.943 0.835 0.967 1.588 sum -11.473 -15.816 -13.413 23.700 Atomic orbital electron populations 1.22248 0.77140 1.04828 1.03610 1.47873 1.08379 1.04984 1.72531 1.21341 0.97549 0.85446 0.94522 1.21007 0.96120 0.94128 0.96511 1.21789 0.95365 1.01688 0.99449 1.21539 0.98825 0.97423 0.98546 1.20735 0.95843 0.93577 0.86253 1.42568 1.67894 1.25044 1.02739 1.19631 1.27251 0.98931 0.92052 0.90816 1.25567 1.03310 1.02499 0.95452 1.69818 1.53280 1.40801 0.98202 0.85189 0.78556 0.79635 0.76239 1.20118 1.22080 1.20710 1.20931 0.87593 0.86149 0.75017 1.90704 1.16229 1.87671 1.50920 1.22261 1.00947 0.90955 0.98996 1.21299 1.02796 0.93513 0.94924 1.23389 1.01063 0.96463 0.97873 1.23414 0.99578 0.98584 0.96756 1.21352 1.00056 0.91776 0.99765 0.90236 0.89502 0.89604 0.91885 0.87893 0.90857 0.95120 0.91601 0.94819 0.95516 0.93131 0.97534 0.95261 0.79102 0.94038 0.85319 0.92771 0.88498 0.83844 0.83824 0.89320 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 8.50 127.77 1.09 1.88 16 2 N -0.61 -13.25 2.39 -846.75 -2.03 -15.27 16 3 C 0.14 3.62 4.58 86.38 0.40 4.01 16 4 C -0.08 -2.58 0.60 -52.19 -0.03 -2.61 16 5 C -0.13 -3.85 7.06 71.98 0.51 -3.34 16 6 C -0.11 -4.13 6.92 71.98 0.50 -3.63 16 7 C 0.16 6.88 5.15 86.38 0.44 7.32 16 8 N -0.74 -39.22 5.00 -343.46 -1.72 -40.94 16 9 C -0.25 -14.33 9.99 84.04 0.84 -13.49 16 10 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 11 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 12 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 13 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 15 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 17 C 0.51 13.11 5.22 87.66 0.46 13.57 16 18 O -0.58 -20.23 13.40 -3.02 -0.04 -20.27 16 19 C -0.11 -1.98 2.63 -10.42 -0.03 -2.00 16 20 C -0.09 -1.57 6.37 30.53 0.19 -1.38 16 21 C -0.17 -2.66 10.78 26.26 0.28 -2.37 16 22 C -0.17 -2.58 10.77 26.26 0.28 -2.30 16 23 C -0.09 -1.70 6.33 30.54 0.19 -1.51 16 24 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.09 0.82 6.78 -2.39 -0.02 0.80 16 26 H 0.09 1.06 6.19 -2.39 -0.01 1.05 16 27 H 0.06 1.96 7.47 -2.39 -0.02 1.94 16 28 H 0.10 2.20 8.07 -2.39 -0.02 2.18 16 29 H 0.07 1.81 6.04 -2.39 -0.01 1.80 16 30 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 31 H 0.07 1.79 8.07 -2.38 -0.02 1.77 16 32 H 0.03 1.43 7.67 -2.39 -0.02 1.41 16 33 H 0.03 1.17 6.86 -2.38 -0.02 1.16 16 34 H 0.05 1.81 6.11 -2.39 -0.01 1.79 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.38 21.18 5.36 -92.71 -0.50 20.68 16 38 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.13 1.48 6.59 -2.39 -0.02 1.47 16 40 H 0.05 1.30 7.88 -2.39 -0.02 1.28 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 43 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 1.61 7.01 -2.39 -0.02 1.59 16 Total: -1.00 -73.97 345.06 4.58 -69.39 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.47 Total: 28.31 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.59 Total: -9.90 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -3.46 Total: -117.03 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.04 Total: -20.27 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -73.97 4.58 -69.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570671485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.152 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds