Wall clock time and date at job start Tue Mar 31 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00290 * 2 1 4 4 C 1.53001 * 109.46702 * 359.97438 * 3 2 1 5 5 C 1.52993 * 109.46870 * 239.99810 * 3 2 1 6 6 C 1.50699 * 109.47236 * 119.99387 * 3 2 1 7 7 O 1.21278 * 120.00359 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99883 * 180.02562 * 6 3 2 9 9 C 1.46497 * 120.00041 * 180.02562 * 8 6 3 10 10 H 1.09005 * 110.64311 * 328.13777 * 9 8 6 11 11 C 1.55275 * 110.91052 * 91.28635 * 9 8 6 12 12 C 1.54906 * 101.52873 * 153.85092 * 11 9 8 13 13 N 1.47428 * 104.92843 * 323.12419 * 12 11 9 14 14 C 1.36934 * 125.65050 * 204.05310 * 13 12 11 15 15 H 1.08000 * 120.00220 * 154.99437 * 14 13 12 16 16 C 1.38816 * 119.99944 * 334.98754 * 14 13 12 17 17 N 1.31621 * 119.99619 * 159.50700 * 16 14 13 18 18 Si 1.86799 * 120.00104 * 339.51642 * 16 14 13 19 19 H 1.48495 * 109.47349 * 84.72212 * 18 16 14 20 20 H 1.48500 * 109.46876 * 204.72590 * 18 16 14 21 21 H 1.48502 * 109.46858 * 324.71860 * 18 16 14 22 22 C 1.47019 * 108.70100 * 24.07752 * 13 12 11 23 23 H 1.08998 * 109.88134 * 239.52063 * 22 13 12 24 24 C 1.52999 * 109.88405 * 118.35724 * 22 13 12 25 25 C 1.52997 * 109.47397 * 66.39930 * 24 22 13 26 26 H 1.07996 * 120.00273 * 180.02562 * 1 2 3 27 27 H 1.08006 * 120.00256 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99963 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46951 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.47122 * 299.99805 * 4 3 2 31 31 H 1.08999 * 109.47757 * 60.00229 * 4 3 2 32 32 H 1.09004 * 109.46759 * 299.99127 * 5 3 2 33 33 H 1.08998 * 109.47566 * 59.99820 * 5 3 2 34 34 H 1.09007 * 109.46804 * 179.97438 * 5 3 2 35 35 H 0.96995 * 119.99728 * 359.97438 * 8 6 3 36 36 H 1.09001 * 110.95957 * 35.82358 * 11 9 8 37 37 H 1.09002 * 111.10252 * 271.93633 * 11 9 8 38 38 H 1.09002 * 110.36649 * 204.23710 * 12 11 9 39 39 H 1.08992 * 110.37342 * 82.02218 * 12 11 9 40 40 H 0.96996 * 119.99607 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.47128 * 186.40273 * 24 22 13 42 42 H 1.09000 * 109.46842 * 306.39814 * 24 22 13 43 43 H 1.09003 * 109.46886 * 292.25636 * 25 24 22 44 44 H 1.08997 * 109.47027 * 52.25111 * 25 24 22 45 45 H 1.08995 * 109.47053 * 172.25929 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3860 -1.2492 6 6 2.9298 1.3850 1.2305 7 8 2.9345 0.4723 2.0292 8 7 3.6987 2.4712 1.4440 9 6 4.5412 2.5486 2.6399 10 1 4.0754 2.0220 3.4730 11 6 5.9582 1.9801 2.3573 12 6 6.8117 2.7428 3.4010 13 7 6.2248 4.0941 3.4571 14 6 6.8753 5.2308 3.8567 15 1 6.5425 6.1958 3.5040 16 6 7.9625 5.1429 4.7153 17 7 8.8260 6.1337 4.7873 18 14 8.2003 3.6184 5.7682 19 1 8.9114 2.5792 4.9812 20 1 9.0028 3.9660 6.9684 21 1 6.8756 3.0982 6.1923 22 6 4.8251 4.0188 3.0136 23 1 4.6772 4.6578 2.1430 24 6 3.8957 4.4563 4.1475 25 6 4.1115 5.9426 4.4393 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.6143 3.4119 -0.0011 30 1 0.4430 2.4101 -0.8909 31 1 0.4423 2.4106 0.8891 32 1 3.6515 0.5575 -1.2490 33 1 2.3166 1.3282 -2.1392 34 1 3.4879 2.3302 -1.2494 35 1 3.6946 3.2013 0.8055 36 1 6.2782 2.2170 1.3426 37 1 5.9924 0.9052 2.5351 38 1 7.8511 2.7940 3.0767 39 1 6.7424 2.2584 4.3749 40 1 9.5855 6.0725 5.3875 41 1 2.8596 4.2906 3.8524 42 1 4.1159 3.8745 5.0427 43 1 5.1043 6.0888 4.8649 44 1 4.0260 6.5108 3.5131 45 1 3.3582 6.2869 5.1478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656731227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:17 Heat of formation + Delta-G solvation = -0.529040 kcal Electronic energy + Delta-G solvation = -23266.349601 eV Core-core repulsion = 20091.804023 eV Total energy + Delta-G solvation = -3174.545577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.32261 -38.31820 -36.29484 -34.23954 -32.52980 -32.18216 -30.96055 -29.21600 -27.64536 -27.10704 -24.71151 -23.77398 -22.17534 -21.43182 -20.35799 -19.69658 -18.42253 -17.11231 -16.83573 -16.36185 -15.44405 -15.08900 -15.04560 -14.45348 -14.12280 -13.88278 -13.57989 -13.14809 -12.90586 -12.61608 -12.52776 -12.45739 -12.32622 -12.17346 -12.04303 -11.87163 -11.42630 -11.40443 -11.10095 -10.92043 -10.88358 -10.64273 -10.39474 -10.31248 -10.06276 -9.91624 -9.79249 -9.42507 -9.33504 -8.79852 -8.58757 -7.02110 -5.97807 -3.31612 2.09401 2.72097 3.33169 3.35655 3.48891 3.52434 4.37820 4.53551 4.56043 4.73860 4.84901 4.99710 5.16985 5.19969 5.21716 5.29366 5.30835 5.43363 5.49722 5.53789 5.62435 5.73014 5.80076 5.87909 5.90519 5.93836 5.96701 6.09429 6.17425 6.32869 6.42248 6.45125 6.53543 6.58863 6.61394 6.62744 6.75246 6.77419 7.03496 7.32092 7.63586 7.75648 8.29020 8.33838 8.80856 9.65680 10.16556 11.17770 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.004568 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.534638 B = 6128.056831 C = 6444.242831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.057 4.057 4 C -0.144 4.144 5 C -0.137 4.137 6 C 0.525 3.475 7 O -0.539 6.539 8 N -0.713 5.713 9 C 0.133 3.867 10 H 0.096 0.904 11 C -0.140 4.140 12 C 0.115 3.885 13 N -0.599 5.599 14 C -0.235 4.235 15 H 0.094 0.906 16 C 0.026 3.974 17 N -0.907 5.907 18 Si 0.880 3.120 19 H -0.285 1.285 20 H -0.303 1.303 21 H -0.275 1.275 22 C 0.158 3.842 23 H 0.045 0.955 24 C -0.124 4.124 25 C -0.152 4.152 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.399 0.601 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.025 0.975 40 H 0.264 0.736 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.041 0.959 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.483 -7.979 -11.467 20.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.138 4.138 3 C -0.060 4.060 4 C -0.201 4.201 5 C -0.194 4.194 6 C 0.310 3.690 7 O -0.416 6.416 8 N -0.364 5.364 9 C 0.028 3.972 10 H 0.114 0.886 11 C -0.179 4.179 12 C -0.011 4.011 13 N -0.325 5.325 14 C -0.362 4.362 15 H 0.112 0.888 16 C -0.173 4.173 17 N -0.551 5.551 18 Si 0.710 3.290 19 H -0.212 1.212 20 H -0.231 1.231 21 H -0.200 1.200 22 C 0.051 3.949 23 H 0.063 0.937 24 C -0.164 4.164 25 C -0.209 4.209 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.060 0.940 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -14.268 -8.465 -10.773 19.780 hybrid contribution 0.247 -0.551 0.505 0.787 sum -14.021 -9.015 -10.268 19.577 Atomic orbital electron populations 1.23939 0.95874 1.02138 1.01494 1.22508 0.95598 0.96695 0.99004 1.19917 0.95776 0.95874 0.94447 1.21954 0.98790 0.96472 1.02911 1.21812 0.99210 1.02808 0.95589 1.20356 0.79604 0.82102 0.86888 1.90688 1.66280 1.37768 1.46823 1.46017 1.44396 1.20604 1.25356 1.22129 0.90217 0.97637 0.87255 0.88647 1.23143 0.95115 0.99424 1.00268 1.21919 0.97253 0.86353 0.95526 1.44759 1.05484 1.04089 1.78141 1.18552 1.09775 0.85368 1.22489 0.88838 1.25131 0.97196 0.96588 0.98362 1.69809 1.13009 1.32880 1.39356 0.86969 0.77584 0.83609 0.80819 1.21209 1.23062 1.20047 1.21202 0.86445 0.91641 0.95637 0.93697 1.21895 0.97229 0.97822 0.99451 1.21926 1.03777 0.94954 1.00282 0.88367 0.87929 0.86934 0.91646 0.91131 0.91678 0.91829 0.91327 0.91630 0.76646 0.91000 0.91402 0.92145 0.95744 0.92661 0.93919 0.92517 0.88828 0.93993 0.95011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.80 13.70 29.02 0.40 -1.40 16 2 C -0.12 -1.27 8.00 -36.02 -0.29 -1.56 16 3 C -0.06 -0.58 0.84 -156.81 -0.13 -0.71 16 4 C -0.14 -1.19 7.02 37.16 0.26 -0.93 16 5 C -0.14 -1.14 8.35 37.15 0.31 -0.83 16 6 C 0.53 7.32 6.47 -10.99 -0.07 7.25 16 7 O -0.54 -9.71 15.68 5.56 0.09 -9.62 16 8 N -0.71 -9.58 4.97 -51.97 -0.26 -9.84 16 9 C 0.13 2.22 2.84 -66.03 -0.19 2.04 16 10 H 0.10 1.77 7.26 -51.93 -0.38 1.39 16 11 C -0.14 -2.45 6.79 -24.52 -0.17 -2.61 16 12 C 0.11 2.47 4.75 -2.53 -0.01 2.45 16 13 N -0.60 -13.66 2.85 -162.58 -0.46 -14.13 16 14 C -0.23 -6.23 7.86 -15.06 -0.12 -6.35 16 15 H 0.09 2.62 7.27 -52.49 -0.38 2.24 16 16 C 0.03 0.74 5.44 -17.43 -0.09 0.65 16 17 N -0.91 -27.17 13.97 55.49 0.78 -26.40 16 18 Si 0.88 22.38 24.35 -169.99 -4.14 18.24 16 19 H -0.29 -7.06 6.73 56.52 0.38 -6.68 16 20 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 21 H -0.27 -6.97 6.79 56.52 0.38 -6.58 16 22 C 0.16 2.95 3.00 -66.95 -0.20 2.75 16 23 H 0.05 0.81 7.72 -51.93 -0.40 0.41 16 24 C -0.12 -2.27 5.46 -26.73 -0.15 -2.42 16 25 C -0.15 -2.86 9.01 37.16 0.33 -2.52 16 26 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 27 H 0.10 0.82 5.69 -52.48 -0.30 0.52 16 28 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 30 H 0.07 0.47 7.50 -51.93 -0.39 0.08 16 31 H 0.06 0.59 7.50 -51.93 -0.39 0.20 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.49 7.57 -51.93 -0.39 0.10 16 35 H 0.40 4.42 7.21 -40.82 -0.29 4.12 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.37 7.29 -51.93 -0.38 0.99 16 39 H 0.03 0.56 5.44 -51.93 -0.28 0.28 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 2.09 5.47 -51.93 -0.28 1.81 16 44 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -31.15 344.99 -6.58 -37.72 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.66 Total: 3.01 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.11 Total: -4.19 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.05 Total: -50.36 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.24 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.15 -6.58 -37.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656731227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.193 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds