Wall clock time and date at job start Tue Mar 31 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00290 * 2 1 4 4 C 1.53001 * 109.46702 * 359.97438 * 3 2 1 5 5 C 1.52993 * 109.46870 * 239.99810 * 3 2 1 6 6 C 1.50699 * 109.47236 * 119.99387 * 3 2 1 7 7 O 1.21278 * 120.00359 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99883 * 180.02562 * 6 3 2 9 9 C 1.46497 * 120.00041 * 180.02562 * 8 6 3 10 10 H 1.09005 * 110.64311 * 328.13777 * 9 8 6 11 11 C 1.55275 * 110.91052 * 91.28635 * 9 8 6 12 12 C 1.54906 * 101.52873 * 153.85092 * 11 9 8 13 13 N 1.47428 * 104.92843 * 323.12419 * 12 11 9 14 14 C 1.36934 * 125.65050 * 204.05310 * 13 12 11 15 15 H 1.08000 * 120.00220 * 154.99437 * 14 13 12 16 16 C 1.38816 * 119.99944 * 334.98754 * 14 13 12 17 17 N 1.31621 * 119.99619 * 159.50700 * 16 14 13 18 18 Si 1.86799 * 120.00104 * 339.51642 * 16 14 13 19 19 H 1.48495 * 109.47349 * 84.72212 * 18 16 14 20 20 H 1.48500 * 109.46876 * 204.72590 * 18 16 14 21 21 H 1.48502 * 109.46858 * 324.71860 * 18 16 14 22 22 C 1.47019 * 108.70100 * 24.07752 * 13 12 11 23 23 H 1.08998 * 109.88134 * 239.52063 * 22 13 12 24 24 C 1.52999 * 109.88405 * 118.35724 * 22 13 12 25 25 C 1.52997 * 109.47397 * 66.39930 * 24 22 13 26 26 H 1.07996 * 120.00273 * 180.02562 * 1 2 3 27 27 H 1.08006 * 120.00256 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99963 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46951 * 180.02562 * 4 3 2 30 30 H 1.08998 * 109.47122 * 299.99805 * 4 3 2 31 31 H 1.08999 * 109.47757 * 60.00229 * 4 3 2 32 32 H 1.09004 * 109.46759 * 299.99127 * 5 3 2 33 33 H 1.08998 * 109.47566 * 59.99820 * 5 3 2 34 34 H 1.09007 * 109.46804 * 179.97438 * 5 3 2 35 35 H 0.96995 * 119.99728 * 359.97438 * 8 6 3 36 36 H 1.09001 * 110.95957 * 35.82358 * 11 9 8 37 37 H 1.09002 * 111.10252 * 271.93633 * 11 9 8 38 38 H 1.09002 * 110.36649 * 204.23710 * 12 11 9 39 39 H 1.08992 * 110.37342 * 82.02218 * 12 11 9 40 40 H 0.96996 * 119.99607 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.47128 * 186.40273 * 24 22 13 42 42 H 1.09000 * 109.46842 * 306.39814 * 24 22 13 43 43 H 1.09003 * 109.46886 * 292.25636 * 25 24 22 44 44 H 1.08997 * 109.47027 * 52.25111 * 25 24 22 45 45 H 1.08995 * 109.47053 * 172.25929 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9431 1.3860 -1.2492 6 6 2.9298 1.3850 1.2305 7 8 2.9345 0.4723 2.0292 8 7 3.6987 2.4712 1.4440 9 6 4.5412 2.5486 2.6399 10 1 4.0754 2.0220 3.4730 11 6 5.9582 1.9801 2.3573 12 6 6.8117 2.7428 3.4010 13 7 6.2248 4.0941 3.4571 14 6 6.8753 5.2308 3.8567 15 1 6.5425 6.1958 3.5040 16 6 7.9625 5.1429 4.7153 17 7 8.8260 6.1337 4.7873 18 14 8.2003 3.6184 5.7682 19 1 8.9114 2.5792 4.9812 20 1 9.0028 3.9660 6.9684 21 1 6.8756 3.0982 6.1923 22 6 4.8251 4.0188 3.0136 23 1 4.6772 4.6578 2.1430 24 6 3.8957 4.4563 4.1475 25 6 4.1115 5.9426 4.4393 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5401 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.6143 3.4119 -0.0011 30 1 0.4430 2.4101 -0.8909 31 1 0.4423 2.4106 0.8891 32 1 3.6515 0.5575 -1.2490 33 1 2.3166 1.3282 -2.1392 34 1 3.4879 2.3302 -1.2494 35 1 3.6946 3.2013 0.8055 36 1 6.2782 2.2170 1.3426 37 1 5.9924 0.9052 2.5351 38 1 7.8511 2.7940 3.0767 39 1 6.7424 2.2584 4.3749 40 1 9.5855 6.0725 5.3875 41 1 2.8596 4.2906 3.8524 42 1 4.1159 3.8745 5.0427 43 1 5.1043 6.0888 4.8649 44 1 4.0260 6.5108 3.5131 45 1 3.3582 6.2869 5.1478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656731227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:16 Heat of formation + Delta-G solvation = -20.868985 kcal Electronic energy + Delta-G solvation = -23267.231607 eV Core-core repulsion = 20091.804023 eV Total energy + Delta-G solvation = -3175.427584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.44816 -39.78738 -37.23656 -35.68090 -34.20346 -33.90549 -31.94319 -30.79658 -28.63630 -28.26216 -26.30355 -24.85595 -23.87185 -22.66817 -21.63243 -21.19019 -19.43013 -18.91089 -17.86841 -17.69638 -17.03046 -16.54186 -16.14835 -15.61673 -15.39193 -15.19515 -14.87555 -14.75930 -14.52483 -14.07254 -13.85422 -13.57196 -13.33940 -13.28292 -13.07760 -13.03061 -12.95356 -12.66794 -12.59811 -12.36685 -12.12092 -12.04218 -12.00793 -11.71078 -11.63373 -11.53600 -11.31315 -10.79451 -10.68938 -10.25593 -10.02264 -8.96926 -8.14485 -5.42727 1.29935 1.32837 1.38956 1.46097 1.64689 2.22815 2.43155 3.08227 3.30761 3.62291 3.65321 3.73976 3.83322 4.02729 4.12023 4.15226 4.22513 4.39628 4.45726 4.49055 4.58549 4.65541 4.73532 4.80831 4.84243 4.88942 4.89974 4.92623 4.99279 5.07085 5.10263 5.13793 5.19184 5.28513 5.32428 5.37002 5.59091 5.68159 5.73176 5.81154 5.85685 6.17061 6.57637 6.79427 7.26353 7.56928 8.14941 9.05163 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028637 B = 0.004568 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.534638 B = 6128.056831 C = 6444.242831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.146 4.146 3 C -0.049 4.049 4 C -0.143 4.143 5 C -0.135 4.135 6 C 0.524 3.476 7 O -0.583 6.583 8 N -0.701 5.701 9 C 0.146 3.854 10 H 0.080 0.920 11 C -0.127 4.127 12 C 0.109 3.891 13 N -0.613 5.613 14 C -0.204 4.204 15 H 0.074 0.926 16 C -0.028 4.028 17 N -0.954 5.954 18 Si 0.928 3.072 19 H -0.276 1.276 20 H -0.312 1.312 21 H -0.276 1.276 22 C 0.156 3.844 23 H 0.062 0.938 24 C -0.121 4.121 25 C -0.147 4.147 26 H 0.107 0.893 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.414 0.586 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.073 0.927 42 H 0.036 0.964 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.949 -8.649 -13.435 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.165 4.165 3 C -0.052 4.052 4 C -0.201 4.201 5 C -0.193 4.193 6 C 0.311 3.689 7 O -0.462 6.462 8 N -0.353 5.353 9 C 0.040 3.960 10 H 0.098 0.902 11 C -0.166 4.166 12 C -0.017 4.017 13 N -0.339 5.339 14 C -0.333 4.333 15 H 0.092 0.908 16 C -0.223 4.223 17 N -0.601 5.601 18 Si 0.759 3.241 19 H -0.203 1.203 20 H -0.240 1.240 21 H -0.202 1.202 22 C 0.050 3.950 23 H 0.079 0.921 24 C -0.160 4.160 25 C -0.204 4.204 26 H 0.125 0.875 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.251 0.749 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.773 -9.150 -12.783 22.989 hybrid contribution 0.873 -0.352 1.051 1.410 sum -15.901 -9.502 -11.732 21.926 Atomic orbital electron populations 1.24162 0.95426 1.03312 0.99204 1.22542 0.96263 0.96516 1.01139 1.19913 0.95701 0.96574 0.92988 1.21997 0.98546 0.95912 1.03601 1.21845 0.99135 1.02945 0.95340 1.21104 0.79210 0.81078 0.87471 1.90673 1.67615 1.39293 1.48612 1.45834 1.43691 1.21279 1.24475 1.21737 0.90245 0.95744 0.88243 0.90153 1.23046 0.94576 0.99341 0.99659 1.21943 0.97340 0.86114 0.96258 1.44860 1.07705 1.03619 1.77732 1.18479 1.08552 0.85939 1.20291 0.90819 1.25577 0.97883 0.98620 1.00191 1.69905 1.14180 1.34955 1.41067 0.86174 0.77160 0.81435 0.79362 1.20278 1.24033 1.20198 1.21354 0.84133 0.93349 0.96138 0.92081 1.21847 0.98810 0.96958 0.98392 1.21806 1.01890 0.95669 1.01010 0.87512 0.86461 0.88341 0.90503 0.88961 0.92479 0.92879 0.89395 0.90548 0.74864 0.89432 0.90535 0.93613 0.96885 0.93085 0.90804 0.94493 0.93008 0.93006 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.85 13.70 67.78 0.93 -1.92 16 2 C -0.15 -2.80 8.00 25.65 0.21 -2.60 16 3 C -0.05 -0.85 0.84 -53.68 -0.05 -0.90 16 4 C -0.14 -1.82 7.02 71.98 0.51 -1.32 16 5 C -0.14 -1.82 8.35 71.98 0.60 -1.22 16 6 C 0.52 13.41 6.47 87.66 0.57 13.98 16 7 O -0.58 -20.28 15.68 -3.02 -0.05 -20.33 16 8 N -0.70 -16.78 4.97 -436.72 -2.17 -18.95 16 9 C 0.15 4.60 2.84 46.22 0.13 4.73 16 10 H 0.08 2.85 7.26 -2.38 -0.02 2.83 16 11 C -0.13 -4.19 6.79 32.03 0.22 -3.97 16 12 C 0.11 4.58 4.75 86.85 0.41 5.00 16 13 N -0.61 -27.59 2.85 -668.27 -1.91 -29.50 16 14 C -0.20 -10.93 7.86 84.03 0.66 -10.27 16 15 H 0.07 4.21 7.27 -2.91 -0.02 4.19 16 16 C -0.03 -1.61 5.44 84.86 0.46 -1.15 16 17 N -0.95 -58.85 13.97 21.65 0.30 -58.54 16 18 Si 0.93 47.23 24.35 68.60 1.67 48.91 16 19 H -0.28 -13.47 6.73 99.48 0.67 -12.80 16 20 H -0.31 -16.17 7.11 99.48 0.71 -15.47 16 21 H -0.28 -13.90 6.79 99.48 0.68 -13.22 16 22 C 0.16 5.53 3.00 45.34 0.14 5.66 16 23 H 0.06 2.01 7.72 -2.39 -0.02 1.99 16 24 C -0.12 -4.17 5.46 30.59 0.17 -4.01 16 25 C -0.15 -5.29 9.01 71.98 0.65 -4.65 16 26 H 0.11 1.44 8.06 -2.91 -0.02 1.41 16 27 H 0.12 1.45 5.69 -2.91 -0.02 1.43 16 28 H 0.10 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.08 0.81 7.56 -2.39 -0.02 0.79 16 30 H 0.09 0.80 7.50 -2.39 -0.02 0.79 16 31 H 0.06 0.84 7.50 -2.39 -0.02 0.82 16 32 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.85 7.57 -2.38 -0.02 0.84 16 35 H 0.41 7.56 7.21 -92.71 -0.67 6.89 16 36 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 2.05 7.29 -2.39 -0.02 2.03 16 39 H 0.01 0.60 5.44 -2.39 -0.01 0.59 16 40 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 2.32 5.47 -2.39 -0.01 2.31 16 44 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -68.97 344.99 3.67 -65.30 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.22 Total: 15.74 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.60 Total: -2.63 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -3.78 Total: -106.99 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.67 Total: 48.91 kcal Total: -68.97 3.67 -65.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656731227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.432 kcal (2) G-P(sol) polarization free energy of solvation -68.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds