Wall clock time and date at job start Tue Mar 31 2020 03:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47454 * 2 1 4 4 H 1.09005 * 109.47028 * 305.00623 * 3 2 1 5 5 C 1.53002 * 109.46773 * 64.99611 * 3 2 1 6 6 C 1.52991 * 109.47521 * 184.99967 * 3 2 1 7 7 H 1.09005 * 109.47505 * 300.00363 * 6 3 2 8 8 C 1.53000 * 109.47228 * 180.02562 * 6 3 2 9 9 C 1.50707 * 109.47140 * 60.00125 * 6 3 2 10 10 O 1.21276 * 119.99798 * 0.02562 * 9 6 3 11 11 N 1.34777 * 120.00017 * 179.97438 * 9 6 3 12 12 C 1.46494 * 120.00142 * 179.97438 * 11 9 6 13 13 H 1.09005 * 115.51606 * 350.58863 * 12 11 9 14 14 C 1.52996 * 117.44694 * 205.16777 * 12 11 9 15 15 H 1.09000 * 119.53895 * 4.12792 * 14 12 11 16 16 C 1.54394 * 118.12347 * 160.80842 * 14 12 11 17 17 N 1.48011 * 104.64679 * 87.21815 * 16 14 12 18 18 C 1.36937 * 127.84002 * 140.39876 * 17 16 14 19 19 H 1.08002 * 120.00079 * 195.62462 * 18 17 16 20 20 C 1.38816 * 119.99716 * 15.63224 * 18 17 16 21 21 N 1.31618 * 120.00092 * 8.99586 * 20 18 17 22 22 Si 1.86798 * 119.99603 * 188.99965 * 20 18 17 23 23 H 1.48503 * 109.47198 * 94.44947 * 22 20 18 24 24 H 1.48504 * 109.46858 * 214.44324 * 22 20 18 25 25 H 1.48492 * 109.47537 * 334.44359 * 22 20 18 26 26 C 1.48144 * 104.32177 * 320.46333 * 17 16 14 27 27 C 1.53000 * 117.44457 * 135.99838 * 12 11 9 28 28 H 1.09004 * 119.53476 * 355.88468 * 27 12 11 29 29 H 1.09007 * 109.47280 * 59.99813 * 1 2 3 30 30 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46876 * 300.00345 * 1 2 3 32 32 H 1.09001 * 109.47229 * 240.00539 * 2 1 3 33 33 H 1.08997 * 109.47187 * 120.00049 * 2 1 3 34 34 H 1.09007 * 109.46905 * 60.00335 * 5 3 2 35 35 H 1.08995 * 109.47533 * 300.00270 * 5 3 2 36 36 H 1.09000 * 109.46816 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47482 * 60.00203 * 8 6 3 38 38 H 1.09003 * 109.47002 * 180.02562 * 8 6 3 39 39 H 1.08998 * 109.47032 * 299.99802 * 8 6 3 40 40 H 0.97004 * 120.00047 * 0.02562 * 11 9 6 41 41 H 1.08998 * 110.40896 * 205.97750 * 16 14 12 42 42 H 1.09007 * 110.40545 * 328.40943 * 16 14 12 43 43 H 0.97001 * 119.99931 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.40578 * 280.74793 * 26 17 16 45 45 H 1.08999 * 110.41236 * 158.32062 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 1 3.9995 0.9052 0.7161 8 6 4.0749 2.8868 -0.1251 9 6 3.9635 0.7706 -1.4135 10 8 3.1119 0.3326 -2.1576 11 7 5.2664 0.6558 -1.7386 12 6 5.6541 0.0003 -2.9901 13 1 4.8498 -0.5065 -3.5235 14 6 7.0481 -0.6267 -3.0555 15 1 7.6779 -0.6304 -2.1658 16 6 7.3191 -1.6865 -4.1451 17 7 7.7410 -0.9058 -5.3297 18 6 8.7262 -1.2120 -6.2301 19 1 9.1042 -0.4509 -6.8966 20 6 9.2389 -2.5008 -6.2863 21 7 8.6631 -3.4685 -5.6050 22 14 10.7463 -2.8616 -7.3290 23 1 11.9641 -2.7819 -6.4829 24 1 10.6336 -4.2249 -7.9070 25 1 10.8396 -1.8650 -8.4259 26 6 6.8568 0.2827 -5.3193 27 6 6.7434 0.6710 -3.8294 28 1 7.1462 1.6344 -3.5164 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0698 1.5874 2.1492 35 1 0.5490 2.1252 1.3969 36 1 1.9990 3.1540 1.3076 37 1 3.7866 3.3738 0.8065 38 1 5.1612 2.8881 -0.2151 39 1 3.6403 3.4262 -0.9666 40 1 5.9476 1.0065 -1.1436 41 1 8.1166 -2.3596 -3.8305 42 1 6.4106 -2.2479 -4.3635 43 1 9.0211 -4.3691 -5.6445 44 1 5.8759 0.0302 -5.7219 45 1 7.3054 1.0953 -5.8908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662075085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:30 Heat of formation + Delta-G solvation = 2.249532 kcal Electronic energy + Delta-G solvation = -22238.842262 eV Core-core repulsion = 19064.417172 eV Total energy + Delta-G solvation = -3174.425090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.24378 -38.64734 -36.55571 -34.50444 -33.07583 -32.02181 -30.18897 -28.70352 -27.13955 -26.11602 -25.57629 -23.26687 -21.71573 -20.51865 -20.41040 -19.56375 -19.24309 -17.16529 -16.83541 -16.30781 -15.24781 -15.04273 -14.91725 -14.65190 -13.82665 -13.68328 -13.56153 -13.23844 -12.92950 -12.77432 -12.74850 -12.30478 -12.15548 -11.92586 -11.79884 -11.57941 -11.51195 -11.48117 -10.99237 -10.84556 -10.72861 -10.68959 -10.54426 -10.35153 -10.15660 -10.12159 -9.74739 -9.45221 -9.16708 -8.72926 -8.29609 -6.87132 -5.80029 -3.14460 2.68092 3.17070 3.38226 3.43403 3.45674 4.31286 4.42909 4.46835 4.60723 4.66363 4.99129 5.13666 5.15604 5.18824 5.28694 5.32320 5.38389 5.39371 5.45151 5.49123 5.56821 5.60364 5.69482 5.76307 5.84084 5.88050 5.91228 5.92134 6.02987 6.12486 6.15686 6.23475 6.33145 6.50983 6.54987 6.70003 6.84602 6.90586 7.35140 7.52966 7.62782 7.71264 8.20440 8.34821 9.10791 9.73312 10.50468 11.34327 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.039273 B = 0.003099 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.792288 B = 9032.816862 C = 9373.043261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.070 4.070 4 H 0.076 0.924 5 C -0.151 4.151 6 C -0.107 4.107 7 H 0.095 0.905 8 C -0.146 4.146 9 C 0.518 3.482 10 O -0.533 6.533 11 N -0.698 5.698 12 C 0.097 3.903 13 H 0.131 0.869 14 C -0.180 4.180 15 H 0.101 0.899 16 C 0.186 3.814 17 N -0.593 5.593 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.156 3.844 27 C -0.185 4.185 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.397 0.603 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.254 0.746 44 H 0.027 0.973 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 11.374 15.142 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.208 4.208 6 C -0.129 4.129 7 H 0.113 0.887 8 C -0.204 4.204 9 C 0.305 3.695 10 O -0.409 6.409 11 N -0.346 5.346 12 C -0.009 4.009 13 H 0.148 0.852 14 C -0.201 4.201 15 H 0.119 0.881 16 C 0.060 3.940 17 N -0.316 5.316 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.029 3.971 27 C -0.207 4.207 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.231 0.769 41 H 0.109 0.891 42 H 0.044 0.956 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.338 10.849 14.474 21.348 hybrid contribution 1.284 0.006 -0.065 1.285 sum -10.054 10.855 14.409 20.653 Atomic orbital electron populations 1.21758 0.96214 1.01261 1.01285 1.21846 0.95852 0.96153 1.03316 1.20942 0.92213 0.97380 0.98372 0.90545 1.21965 1.01549 1.00283 0.96974 1.21394 0.98105 0.97431 0.95938 0.88680 1.21839 1.01099 0.94424 1.02989 1.20610 0.82156 0.79021 0.87738 1.90638 1.49571 1.48492 1.52228 1.45450 1.07377 1.59459 1.22340 1.21834 0.93266 0.99269 0.86500 0.85152 1.24666 0.96083 0.98324 1.01052 0.88068 1.21023 0.99083 0.90655 0.83268 1.45149 1.38009 1.21228 1.27256 1.19016 1.10063 0.93993 1.12469 0.90496 1.24909 1.00066 0.95184 1.00135 1.69900 1.40539 1.00450 1.45217 0.86080 0.82472 0.77445 0.79629 1.21556 1.21646 1.20484 1.21113 0.94113 0.91190 0.90693 1.24338 1.03160 0.96742 0.96461 0.88056 0.92827 0.93107 0.93180 0.88961 0.92959 0.92769 0.92246 0.92511 0.91177 0.92208 0.91973 0.76887 0.89080 0.95648 0.93536 0.95493 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.16 0.36 -1.07 16 2 C -0.13 -1.47 5.14 -26.73 -0.14 -1.61 16 3 C -0.07 -0.68 1.61 -90.62 -0.15 -0.83 16 4 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 5 C -0.15 -1.11 8.60 37.16 0.32 -0.79 16 6 C -0.11 -1.02 2.32 -91.77 -0.21 -1.24 16 7 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 8 C -0.15 -1.12 8.74 37.16 0.32 -0.79 16 9 C 0.52 7.00 6.83 -10.98 -0.08 6.93 16 10 O -0.53 -9.19 13.24 5.56 0.07 -9.12 16 11 N -0.70 -9.26 5.46 -53.81 -0.29 -9.55 16 12 C 0.10 1.65 5.98 -67.94 -0.41 1.24 16 13 H 0.13 2.53 7.40 -51.93 -0.38 2.15 16 14 C -0.18 -3.40 7.05 -89.29 -0.63 -4.03 16 15 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 16 C 0.19 4.50 5.70 -2.48 -0.01 4.49 16 17 N -0.59 -15.32 3.38 -168.97 -0.57 -15.90 16 18 C -0.23 -6.36 10.35 -15.06 -0.16 -6.51 16 19 H 0.08 2.08 7.84 -52.49 -0.41 1.66 16 20 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 21 N -0.91 -26.87 10.86 55.49 0.60 -26.27 16 22 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.16 3.33 7.04 -2.41 -0.02 3.32 16 27 C -0.19 -3.33 7.05 -89.30 -0.63 -3.96 16 28 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.41 6.56 -51.93 -0.34 0.07 16 32 H 0.09 1.30 5.42 -51.93 -0.28 1.02 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 36 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 37 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 38 H 0.06 0.41 7.56 -51.93 -0.39 0.02 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.40 4.17 8.24 -40.82 -0.34 3.83 16 41 H 0.09 2.44 6.51 -51.93 -0.34 2.11 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -31.24 350.22 -9.15 -40.39 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.70 Total: 3.36 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.51 Total: -5.12 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.26 Total: -51.72 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.24 -9.15 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662075085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.636 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds