Wall clock time and date at job start Tue Mar 31 2020 03:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47454 * 2 1 4 4 H 1.09005 * 109.47028 * 305.00623 * 3 2 1 5 5 C 1.53002 * 109.46773 * 64.99611 * 3 2 1 6 6 C 1.52991 * 109.47521 * 184.99967 * 3 2 1 7 7 H 1.09005 * 109.47505 * 300.00363 * 6 3 2 8 8 C 1.53000 * 109.47228 * 180.02562 * 6 3 2 9 9 C 1.50707 * 109.47140 * 60.00125 * 6 3 2 10 10 O 1.21276 * 119.99798 * 0.02562 * 9 6 3 11 11 N 1.34777 * 120.00017 * 179.97438 * 9 6 3 12 12 C 1.46494 * 120.00142 * 179.97438 * 11 9 6 13 13 H 1.09005 * 115.51606 * 350.58863 * 12 11 9 14 14 C 1.52996 * 117.44694 * 205.16777 * 12 11 9 15 15 H 1.09000 * 119.53895 * 4.12792 * 14 12 11 16 16 C 1.54394 * 118.12347 * 160.80842 * 14 12 11 17 17 N 1.48011 * 104.64679 * 87.21815 * 16 14 12 18 18 C 1.36937 * 127.84002 * 140.39876 * 17 16 14 19 19 H 1.08002 * 120.00079 * 195.62462 * 18 17 16 20 20 C 1.38816 * 119.99716 * 15.63224 * 18 17 16 21 21 N 1.31618 * 120.00092 * 8.99586 * 20 18 17 22 22 Si 1.86798 * 119.99603 * 188.99965 * 20 18 17 23 23 H 1.48503 * 109.47198 * 94.44947 * 22 20 18 24 24 H 1.48504 * 109.46858 * 214.44324 * 22 20 18 25 25 H 1.48492 * 109.47537 * 334.44359 * 22 20 18 26 26 C 1.48144 * 104.32177 * 320.46333 * 17 16 14 27 27 C 1.53000 * 117.44457 * 135.99838 * 12 11 9 28 28 H 1.09004 * 119.53476 * 355.88468 * 27 12 11 29 29 H 1.09007 * 109.47280 * 59.99813 * 1 2 3 30 30 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46876 * 300.00345 * 1 2 3 32 32 H 1.09001 * 109.47229 * 240.00539 * 2 1 3 33 33 H 1.08997 * 109.47187 * 120.00049 * 2 1 3 34 34 H 1.09007 * 109.46905 * 60.00335 * 5 3 2 35 35 H 1.08995 * 109.47533 * 300.00270 * 5 3 2 36 36 H 1.09000 * 109.46816 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47482 * 60.00203 * 8 6 3 38 38 H 1.09003 * 109.47002 * 180.02562 * 8 6 3 39 39 H 1.08998 * 109.47032 * 299.99802 * 8 6 3 40 40 H 0.97004 * 120.00047 * 0.02562 * 11 9 6 41 41 H 1.08998 * 110.40896 * 205.97750 * 16 14 12 42 42 H 1.09007 * 110.40545 * 328.40943 * 16 14 12 43 43 H 0.97001 * 119.99931 * 179.97438 * 21 20 18 44 44 H 1.09004 * 110.40578 * 280.74793 * 26 17 16 45 45 H 1.08999 * 110.41236 * 158.32062 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 1 3.9995 0.9052 0.7161 8 6 4.0749 2.8868 -0.1251 9 6 3.9635 0.7706 -1.4135 10 8 3.1119 0.3326 -2.1576 11 7 5.2664 0.6558 -1.7386 12 6 5.6541 0.0003 -2.9901 13 1 4.8498 -0.5065 -3.5235 14 6 7.0481 -0.6267 -3.0555 15 1 7.6779 -0.6304 -2.1658 16 6 7.3191 -1.6865 -4.1451 17 7 7.7410 -0.9058 -5.3297 18 6 8.7262 -1.2120 -6.2301 19 1 9.1042 -0.4509 -6.8966 20 6 9.2389 -2.5008 -6.2863 21 7 8.6631 -3.4685 -5.6050 22 14 10.7463 -2.8616 -7.3290 23 1 11.9641 -2.7819 -6.4829 24 1 10.6336 -4.2249 -7.9070 25 1 10.8396 -1.8650 -8.4259 26 6 6.8568 0.2827 -5.3193 27 6 6.7434 0.6710 -3.8294 28 1 7.1462 1.6344 -3.5164 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0698 1.5874 2.1492 35 1 0.5490 2.1252 1.3969 36 1 1.9990 3.1540 1.3076 37 1 3.7866 3.3738 0.8065 38 1 5.1612 2.8881 -0.2151 39 1 3.6403 3.4262 -0.9666 40 1 5.9476 1.0065 -1.1436 41 1 8.1166 -2.3596 -3.8305 42 1 6.4106 -2.2479 -4.3635 43 1 9.0211 -4.3691 -5.6445 44 1 5.8759 0.0302 -5.7219 45 1 7.3054 1.0953 -5.8908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662075085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:30 Heat of formation + Delta-G solvation = -16.763714 kcal Electronic energy + Delta-G solvation = -22239.666738 eV Core-core repulsion = 19064.417172 eV Total energy + Delta-G solvation = -3175.249566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39637 -40.13410 -37.49850 -36.06346 -34.53870 -33.19887 -31.89274 -29.42035 -28.93874 -27.63730 -26.68900 -24.39749 -23.14157 -21.99559 -21.53636 -20.90765 -20.48059 -18.88748 -18.15332 -17.64020 -16.75814 -16.11769 -16.04859 -15.90087 -15.44152 -15.02669 -14.67442 -14.55447 -14.34180 -13.81494 -13.59133 -13.49933 -13.37752 -13.21565 -13.00300 -12.87487 -12.72921 -12.53429 -12.40912 -12.32997 -12.14404 -12.03035 -11.90398 -11.71741 -11.46431 -11.43104 -11.27226 -10.88788 -10.72264 -10.47069 -9.66606 -8.94654 -7.93284 -5.30754 1.46339 1.48073 1.57706 1.59671 2.01991 2.47620 2.84538 3.27169 3.55877 3.66031 3.78325 3.83740 3.92878 3.94302 4.12713 4.22938 4.36645 4.42299 4.45317 4.49889 4.60388 4.67007 4.76154 4.78447 4.85033 4.91258 4.96476 4.99216 5.05047 5.13920 5.17625 5.23534 5.26612 5.34724 5.38196 5.41287 5.45125 5.53545 5.59779 5.62481 5.69720 6.14853 6.57797 6.98547 7.29851 7.65250 8.43788 9.20657 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.039273 B = 0.003099 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.792288 B = 9032.816862 C = 9373.043261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C -0.069 4.069 4 H 0.056 0.944 5 C -0.145 4.145 6 C -0.098 4.098 7 H 0.118 0.882 8 C -0.143 4.143 9 C 0.513 3.487 10 O -0.575 6.575 11 N -0.685 5.685 12 C 0.118 3.882 13 H 0.101 0.899 14 C -0.179 4.179 15 H 0.127 0.873 16 C 0.189 3.811 17 N -0.617 5.617 18 C -0.243 4.243 19 H 0.083 0.917 20 C -0.063 4.063 21 N -0.948 5.948 22 Si 0.984 3.016 23 H -0.283 1.283 24 H -0.295 1.295 25 H -0.266 1.266 26 C 0.148 3.852 27 C -0.168 4.168 28 H 0.136 0.864 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.416 0.584 41 H 0.059 0.941 42 H -0.007 1.007 43 H 0.250 0.750 44 H 0.016 0.984 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.304 13.813 17.274 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.088 4.088 4 H 0.075 0.925 5 C -0.201 4.201 6 C -0.119 4.119 7 H 0.136 0.864 8 C -0.200 4.200 9 C 0.302 3.698 10 O -0.454 6.454 11 N -0.335 5.335 12 C 0.011 3.989 13 H 0.119 0.881 14 C -0.200 4.200 15 H 0.145 0.855 16 C 0.063 3.937 17 N -0.341 5.341 18 C -0.371 4.371 19 H 0.101 0.899 20 C -0.257 4.257 21 N -0.596 5.596 22 Si 0.811 3.189 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.022 3.978 27 C -0.189 4.189 28 H 0.153 0.847 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.254 0.746 41 H 0.078 0.922 42 H 0.011 0.989 43 H 0.059 0.941 44 H 0.034 0.966 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.765 13.339 16.637 23.887 hybrid contribution 0.994 -0.774 -0.765 1.474 sum -9.771 12.565 15.872 22.478 Atomic orbital electron populations 1.21745 0.95492 1.01358 1.01738 1.21809 0.96628 0.96976 1.01931 1.20930 0.92308 0.96381 0.99223 0.92544 1.21923 1.01878 1.00865 0.95483 1.21446 0.98048 0.98615 0.93812 0.86416 1.21867 1.01787 0.92607 1.03785 1.21485 0.81452 0.78204 0.88681 1.90645 1.50723 1.50128 1.53905 1.45283 1.08116 1.58956 1.21126 1.21329 0.91439 0.98374 0.87769 0.88104 1.24340 0.98240 0.96760 1.00670 0.85528 1.20749 0.96401 0.91640 0.84871 1.45457 1.38409 1.22566 1.27642 1.19427 1.10486 0.94376 1.12830 0.89888 1.25795 1.03081 0.95032 1.01769 1.70106 1.42076 1.00544 1.46882 0.84992 0.78698 0.76965 0.78227 1.21013 1.22160 1.19058 1.21246 0.92865 0.90127 0.93525 1.24245 1.03354 0.97473 0.93808 0.84658 0.93866 0.93254 0.91165 0.92606 0.91936 0.91643 0.92008 0.91073 0.88830 0.90933 0.93117 0.74642 0.92216 0.98906 0.94061 0.96643 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.67 71.98 0.70 -2.05 16 2 C -0.14 -2.90 5.14 30.59 0.16 -2.74 16 3 C -0.07 -1.23 1.61 -10.80 -0.02 -1.25 16 4 H 0.06 1.23 8.10 -2.38 -0.02 1.21 16 5 C -0.14 -1.64 8.60 71.98 0.62 -1.02 16 6 C -0.10 -1.61 2.32 -11.54 -0.03 -1.64 16 7 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 8 C -0.14 -1.66 8.74 71.98 0.63 -1.03 16 9 C 0.51 13.27 6.83 87.66 0.60 13.87 16 10 O -0.57 -20.27 13.24 -3.02 -0.04 -20.31 16 11 N -0.68 -16.75 5.46 -442.54 -2.41 -19.17 16 12 C 0.12 3.94 5.98 44.99 0.27 4.21 16 13 H 0.10 4.06 7.40 -2.38 -0.02 4.04 16 14 C -0.18 -6.66 7.05 -9.94 -0.07 -6.73 16 15 H 0.13 4.09 8.14 -2.39 -0.02 4.07 16 16 C 0.19 9.55 5.70 86.56 0.49 10.04 16 17 N -0.62 -32.57 3.38 -688.49 -2.32 -34.90 16 18 C -0.24 -13.76 10.35 84.03 0.87 -12.89 16 19 H 0.08 4.48 7.84 -2.91 -0.02 4.45 16 20 C -0.06 -3.62 5.40 84.86 0.46 -3.16 16 21 N -0.95 -57.75 10.86 21.65 0.24 -57.51 16 22 Si 0.98 45.67 29.56 68.60 2.03 47.70 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 C 0.15 6.35 7.04 86.53 0.61 6.96 16 27 C -0.17 -5.75 7.05 -9.94 -0.07 -5.82 16 28 H 0.14 3.80 8.14 -2.38 -0.02 3.78 16 29 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.02 6.56 -2.39 -0.02 1.01 16 32 H 0.06 1.62 5.42 -2.39 -0.01 1.61 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.06 0.69 6.56 -2.39 -0.02 0.67 16 36 H 0.07 0.62 6.43 -2.39 -0.02 0.61 16 37 H 0.09 0.69 6.43 -2.39 -0.02 0.68 16 38 H 0.07 0.68 7.56 -2.39 -0.02 0.66 16 39 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.42 7.20 8.24 -92.71 -0.76 6.43 16 41 H 0.06 3.36 6.51 -2.39 -0.02 3.34 16 42 H -0.01 -0.39 8.14 -2.38 -0.02 -0.40 16 43 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -71.51 350.22 2.90 -68.60 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.20 Total: 18.84 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 5.21 Total: -3.26 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -4.50 Total: -111.57 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.04 Total: -20.31 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.51 2.90 -68.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662075085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.840 kcal (2) G-P(sol) polarization free energy of solvation -71.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds