Wall clock time and date at job start Tue Mar 31 2020 03:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47220 * 2 1 4 4 H 1.08996 * 109.47573 * 54.99481 * 3 2 1 5 5 C 1.52998 * 109.46870 * 294.99759 * 3 2 1 6 6 C 1.52998 * 109.47220 * 175.00175 * 3 2 1 7 7 H 1.08996 * 109.47415 * 59.99208 * 6 3 2 8 8 C 1.52999 * 109.47220 * 179.97438 * 6 3 2 9 9 C 1.50707 * 109.47000 * 299.99427 * 6 3 2 10 10 O 1.21288 * 119.99515 * 0.02562 * 9 6 3 11 11 N 1.34768 * 120.00051 * 180.02562 * 9 6 3 12 12 C 1.46499 * 120.00077 * 180.02562 * 11 9 6 13 13 H 1.09004 * 115.51482 * 350.58297 * 12 11 9 14 14 C 1.52995 * 117.44531 * 205.16447 * 12 11 9 15 15 H 1.09002 * 119.54294 * 4.12141 * 14 12 11 16 16 C 1.54396 * 118.12456 * 160.80681 * 14 12 11 17 17 N 1.48011 * 104.64518 * 87.22028 * 16 14 12 18 18 C 1.36942 * 127.83842 * 140.40888 * 17 16 14 19 19 H 1.07999 * 119.99618 * 195.64498 * 18 17 16 20 20 C 1.38803 * 120.00015 * 15.64364 * 18 17 16 21 21 N 1.31623 * 120.00477 * 9.09790 * 20 18 17 22 22 Si 1.86804 * 120.00084 * 189.09838 * 20 18 17 23 23 H 1.48494 * 109.47204 * 59.99638 * 22 20 18 24 24 H 1.48495 * 109.47515 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46851 * 299.99965 * 22 20 18 26 26 C 1.48148 * 104.32340 * 320.45882 * 17 16 14 27 27 C 1.52998 * 117.44370 * 135.99504 * 12 11 9 28 28 H 1.08999 * 119.54080 * 355.88792 * 27 12 11 29 29 H 1.09001 * 109.47211 * 60.00228 * 1 2 3 30 30 H 1.08999 * 109.46987 * 300.00611 * 1 2 3 31 31 H 1.09003 * 109.47186 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47211 * 119.99771 * 2 1 3 33 33 H 1.09000 * 109.47427 * 239.99684 * 2 1 3 34 34 H 1.08998 * 109.47292 * 300.00270 * 5 3 2 35 35 H 1.09004 * 109.47358 * 60.00168 * 5 3 2 36 36 H 1.09003 * 109.47095 * 180.02562 * 5 3 2 37 37 H 1.09000 * 109.47212 * 179.97438 * 8 6 3 38 38 H 1.08999 * 109.46664 * 299.99483 * 8 6 3 39 39 H 1.08996 * 109.47573 * 59.99305 * 8 6 3 40 40 H 0.97003 * 120.00540 * 359.97438 * 11 9 6 41 41 H 1.08994 * 110.40937 * 205.97926 * 16 14 12 42 42 H 1.09003 * 110.40168 * 328.41593 * 16 14 12 43 43 H 0.96997 * 119.99994 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.40255 * 280.75312 * 26 17 16 45 45 H 1.08997 * 110.40541 * 158.31933 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1264 -1.3074 6 6 3.5649 1.4443 0.1257 7 1 3.9995 0.9052 -0.7160 8 6 4.0749 2.8868 0.1250 9 6 3.9636 0.7706 1.4135 10 8 3.1118 0.3318 2.1572 11 7 5.2664 0.6558 1.7387 12 6 5.6540 0.0004 2.9902 13 1 4.8366 -0.2232 3.6759 14 6 7.0012 0.3895 3.6022 15 1 7.5946 1.1775 3.1385 16 6 7.2375 0.0826 5.0967 17 7 7.7593 -1.3024 5.1164 18 6 8.7539 -1.8142 5.9064 19 1 9.2108 -2.7598 5.6545 20 6 9.1747 -1.1177 7.0309 21 7 8.5041 -0.0616 7.4402 22 14 10.6929 -1.6790 7.9634 23 1 11.8701 -1.6450 7.0589 24 1 10.9281 -0.7740 9.1170 25 1 10.4869 -3.0648 8.4560 26 6 6.9623 -2.0090 4.0867 27 6 6.8198 -0.9889 2.9365 28 1 7.2781 -1.2279 1.9768 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 2.0699 1.5874 -2.1492 35 1 0.5490 2.1252 -1.3970 36 1 1.9991 3.1540 -1.3076 37 1 5.1612 2.8881 0.2150 38 1 3.7866 3.3736 -0.8066 39 1 3.6403 3.4263 0.9665 40 1 5.9476 1.0064 1.1437 41 1 7.9721 0.7708 5.5146 42 1 6.3003 0.1436 5.6500 43 1 8.7985 0.4253 8.2258 44 1 5.9821 -2.2758 4.4817 45 1 7.4895 -2.8987 3.7425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662075088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:42 Heat of formation + Delta-G solvation = 2.384487 kcal Electronic energy + Delta-G solvation = -22237.697491 eV Core-core repulsion = 19063.278253 eV Total energy + Delta-G solvation = -3174.419237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.24186 -38.64609 -36.55577 -34.50213 -33.07574 -32.01999 -30.18797 -28.70296 -27.13743 -26.11275 -25.57468 -23.26877 -21.71495 -20.51822 -20.41548 -19.52816 -19.27136 -17.16806 -16.82765 -16.30742 -15.25157 -15.07288 -14.88440 -14.64820 -13.78969 -13.70420 -13.56778 -13.26950 -12.92484 -12.78923 -12.69855 -12.30057 -12.16245 -11.91923 -11.79905 -11.58100 -11.51273 -11.47994 -11.00714 -10.82372 -10.70702 -10.67243 -10.54491 -10.38043 -10.20735 -10.12794 -9.73728 -9.43310 -9.17015 -8.72429 -8.29729 -6.86859 -5.79757 -3.14194 2.68107 3.17102 3.39120 3.43266 3.44603 4.31517 4.43610 4.46657 4.60614 4.66679 4.99089 5.13539 5.16228 5.18601 5.29179 5.31932 5.38434 5.39608 5.45581 5.48794 5.56625 5.60827 5.69841 5.77448 5.84269 5.87634 5.91078 5.92174 6.03465 6.11800 6.15683 6.23511 6.32775 6.50336 6.54866 6.70107 6.84635 6.90716 7.35206 7.52823 7.62841 7.71076 8.20740 8.34863 9.10945 9.73564 10.50762 11.34572 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040953 B = 0.003073 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.543166 B = 9110.283761 C = 9358.125756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.071 4.071 4 H 0.077 0.923 5 C -0.151 4.151 6 C -0.107 4.107 7 H 0.095 0.905 8 C -0.147 4.147 9 C 0.518 3.482 10 O -0.533 6.533 11 N -0.698 5.698 12 C 0.097 3.903 13 H 0.131 0.869 14 C -0.180 4.180 15 H 0.101 0.899 16 C 0.186 3.814 17 N -0.593 5.593 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.156 3.844 27 C -0.186 4.186 28 H 0.101 0.899 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.397 0.603 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.255 0.745 44 H 0.027 0.973 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 5.424 -18.338 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.208 4.208 6 C -0.128 4.128 7 H 0.113 0.887 8 C -0.204 4.204 9 C 0.305 3.695 10 O -0.409 6.409 11 N -0.346 5.346 12 C -0.009 4.009 13 H 0.149 0.851 14 C -0.201 4.201 15 H 0.119 0.881 16 C 0.060 3.940 17 N -0.316 5.316 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.561 5.561 22 Si 0.744 3.256 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.029 3.971 27 C -0.207 4.207 28 H 0.119 0.881 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.231 0.769 41 H 0.109 0.891 42 H 0.043 0.957 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.047 5.139 -17.544 21.360 hybrid contribution 1.284 -0.040 0.048 1.285 sum -9.763 5.099 -17.496 20.674 Atomic orbital electron populations 1.21760 0.96216 1.01234 1.01322 1.21844 0.95849 0.96178 1.03254 1.20943 0.92231 0.97361 0.98403 0.90503 1.21964 1.01545 1.00314 0.96945 1.21391 0.98090 0.97469 0.95877 0.88740 1.21845 1.01157 0.94390 1.03022 1.20613 0.82158 0.79007 0.87757 1.90641 1.49574 1.48567 1.52159 1.45448 1.07384 1.59293 1.22491 1.21835 0.92963 0.98817 0.87253 0.85149 1.24663 0.97199 0.97819 1.00416 0.88070 1.21018 0.98141 0.88069 0.86781 1.45139 1.39652 1.05235 1.41603 1.18951 1.09170 1.05086 1.02442 0.90577 1.24903 0.99722 0.98715 0.96898 1.69889 1.39459 1.20831 1.25953 0.86181 0.82548 0.77791 0.79120 1.21096 1.21530 1.20956 1.21114 0.94873 0.93083 0.88037 1.24342 1.02214 0.93971 1.00205 0.88055 0.93173 0.92797 0.93136 0.88970 0.93012 0.92798 0.92249 0.92480 0.92160 0.91186 0.91905 0.76886 0.89102 0.95652 0.93468 0.95496 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 37.16 0.36 -1.06 16 2 C -0.13 -1.45 5.14 -26.73 -0.14 -1.58 16 3 C -0.07 -0.69 1.62 -90.62 -0.15 -0.83 16 4 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 5 C -0.15 -1.11 8.60 37.16 0.32 -0.79 16 6 C -0.11 -1.02 2.32 -91.77 -0.21 -1.23 16 7 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 8 C -0.15 -1.15 8.74 37.16 0.32 -0.83 16 9 C 0.52 7.00 6.83 -10.99 -0.08 6.93 16 10 O -0.53 -9.19 13.24 5.55 0.07 -9.12 16 11 N -0.70 -9.26 5.45 -53.81 -0.29 -9.55 16 12 C 0.10 1.65 5.98 -67.93 -0.41 1.24 16 13 H 0.13 2.53 7.40 -51.93 -0.38 2.15 16 14 C -0.18 -3.39 7.05 -89.29 -0.63 -4.02 16 15 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 16 C 0.19 4.51 5.69 -2.48 -0.01 4.49 16 17 N -0.59 -15.33 3.38 -168.97 -0.57 -15.91 16 18 C -0.23 -6.39 10.35 -15.06 -0.16 -6.55 16 19 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 20 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 21 N -0.92 -26.89 10.87 55.49 0.60 -26.29 16 22 Si 0.91 21.93 29.56 -169.99 -5.03 16.91 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.16 3.34 7.04 -2.41 -0.02 3.32 16 27 C -0.19 -3.34 7.05 -89.29 -0.63 -3.97 16 28 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 29 H 0.05 0.41 6.57 -51.93 -0.34 0.07 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.28 5.41 -51.93 -0.28 1.00 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 36 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 37 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 38 H 0.07 0.43 6.43 -51.93 -0.33 0.10 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.40 4.17 8.24 -40.82 -0.34 3.83 16 41 H 0.09 2.44 6.51 -51.93 -0.34 2.10 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -31.23 350.23 -9.15 -40.38 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.70 Total: 3.42 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.51 Total: -5.12 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.26 Total: -51.74 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.12 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.23 -9.15 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662075088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.767 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds