Wall clock time and date at job start Tue Mar 31 2020 03:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47220 * 2 1 4 4 H 1.08996 * 109.47573 * 54.99481 * 3 2 1 5 5 C 1.52998 * 109.46870 * 294.99759 * 3 2 1 6 6 C 1.52998 * 109.47220 * 175.00175 * 3 2 1 7 7 H 1.08996 * 109.47415 * 59.99208 * 6 3 2 8 8 C 1.52999 * 109.47220 * 179.97438 * 6 3 2 9 9 C 1.50707 * 109.47000 * 299.99427 * 6 3 2 10 10 O 1.21288 * 119.99515 * 0.02562 * 9 6 3 11 11 N 1.34768 * 120.00051 * 180.02562 * 9 6 3 12 12 C 1.46499 * 120.00077 * 180.02562 * 11 9 6 13 13 H 1.09004 * 115.51482 * 350.58297 * 12 11 9 14 14 C 1.52995 * 117.44531 * 205.16447 * 12 11 9 15 15 H 1.09002 * 119.54294 * 4.12141 * 14 12 11 16 16 C 1.54396 * 118.12456 * 160.80681 * 14 12 11 17 17 N 1.48011 * 104.64518 * 87.22028 * 16 14 12 18 18 C 1.36942 * 127.83842 * 140.40888 * 17 16 14 19 19 H 1.07999 * 119.99618 * 195.64498 * 18 17 16 20 20 C 1.38803 * 120.00015 * 15.64364 * 18 17 16 21 21 N 1.31623 * 120.00477 * 9.09790 * 20 18 17 22 22 Si 1.86804 * 120.00084 * 189.09838 * 20 18 17 23 23 H 1.48494 * 109.47204 * 59.99638 * 22 20 18 24 24 H 1.48495 * 109.47515 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46851 * 299.99965 * 22 20 18 26 26 C 1.48148 * 104.32340 * 320.45882 * 17 16 14 27 27 C 1.52998 * 117.44370 * 135.99504 * 12 11 9 28 28 H 1.08999 * 119.54080 * 355.88792 * 27 12 11 29 29 H 1.09001 * 109.47211 * 60.00228 * 1 2 3 30 30 H 1.08999 * 109.46987 * 300.00611 * 1 2 3 31 31 H 1.09003 * 109.47186 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47211 * 119.99771 * 2 1 3 33 33 H 1.09000 * 109.47427 * 239.99684 * 2 1 3 34 34 H 1.08998 * 109.47292 * 300.00270 * 5 3 2 35 35 H 1.09004 * 109.47358 * 60.00168 * 5 3 2 36 36 H 1.09003 * 109.47095 * 180.02562 * 5 3 2 37 37 H 1.09000 * 109.47212 * 179.97438 * 8 6 3 38 38 H 1.08999 * 109.46664 * 299.99483 * 8 6 3 39 39 H 1.08996 * 109.47573 * 59.99305 * 8 6 3 40 40 H 0.97003 * 120.00540 * 359.97438 * 11 9 6 41 41 H 1.08994 * 110.40937 * 205.97926 * 16 14 12 42 42 H 1.09003 * 110.40168 * 328.41593 * 16 14 12 43 43 H 0.96997 * 119.99994 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.40255 * 280.75312 * 26 17 16 45 45 H 1.08997 * 110.40541 * 158.31933 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1264 -1.3074 6 6 3.5649 1.4443 0.1257 7 1 3.9995 0.9052 -0.7160 8 6 4.0749 2.8868 0.1250 9 6 3.9636 0.7706 1.4135 10 8 3.1118 0.3318 2.1572 11 7 5.2664 0.6558 1.7387 12 6 5.6540 0.0004 2.9902 13 1 4.8366 -0.2232 3.6759 14 6 7.0012 0.3895 3.6022 15 1 7.5946 1.1775 3.1385 16 6 7.2375 0.0826 5.0967 17 7 7.7593 -1.3024 5.1164 18 6 8.7539 -1.8142 5.9064 19 1 9.2108 -2.7598 5.6545 20 6 9.1747 -1.1177 7.0309 21 7 8.5041 -0.0616 7.4402 22 14 10.6929 -1.6790 7.9634 23 1 11.8701 -1.6450 7.0589 24 1 10.9281 -0.7740 9.1170 25 1 10.4869 -3.0648 8.4560 26 6 6.9623 -2.0090 4.0867 27 6 6.8198 -0.9889 2.9365 28 1 7.2781 -1.2279 1.9768 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 2.0699 1.5874 -2.1492 35 1 0.5490 2.1252 -1.3970 36 1 1.9991 3.1540 -1.3076 37 1 5.1612 2.8881 0.2150 38 1 3.7866 3.3736 -0.8066 39 1 3.6403 3.4263 0.9665 40 1 5.9476 1.0064 1.1437 41 1 7.9721 0.7708 5.5146 42 1 6.3003 0.1436 5.6500 43 1 8.7985 0.4253 8.2258 44 1 5.9821 -2.2758 4.4817 45 1 7.4895 -2.8987 3.7425 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662075088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:41 Heat of formation + Delta-G solvation = -16.626477 kcal Electronic energy + Delta-G solvation = -22238.521868 eV Core-core repulsion = 19063.278253 eV Total energy + Delta-G solvation = -3175.243615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39524 -40.13299 -37.49681 -36.06163 -34.53902 -33.19730 -31.89125 -29.42008 -28.93701 -27.63544 -26.69356 -24.39708 -23.13914 -21.99678 -21.53413 -20.89415 -20.48882 -18.88853 -18.14850 -17.63970 -16.75683 -16.15360 -16.01443 -15.89840 -15.44384 -15.00600 -14.66761 -14.59475 -14.32333 -13.82948 -13.55359 -13.50403 -13.38337 -13.22080 -13.02475 -12.84552 -12.68299 -12.54898 -12.41009 -12.33180 -12.16288 -12.06779 -11.89532 -11.72627 -11.47197 -11.43073 -11.26914 -10.86199 -10.72705 -10.46235 -9.66905 -8.94431 -7.93076 -5.30575 1.46249 1.49662 1.56511 1.59513 2.02001 2.47974 2.84585 3.27309 3.55900 3.66022 3.79151 3.82770 3.92180 3.95125 4.12769 4.23326 4.36321 4.42541 4.45575 4.49787 4.60540 4.66916 4.76425 4.78874 4.84695 4.90937 4.96466 4.98778 5.04943 5.14145 5.17763 5.23667 5.26548 5.34998 5.38248 5.41161 5.45095 5.53641 5.59859 5.62471 5.70233 6.14983 6.57818 6.98572 7.29855 7.65453 8.44011 9.20692 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040953 B = 0.003073 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.543166 B = 9110.283761 C = 9358.125756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C -0.070 4.070 4 H 0.054 0.946 5 C -0.144 4.144 6 C -0.097 4.097 7 H 0.121 0.879 8 C -0.145 4.145 9 C 0.513 3.487 10 O -0.575 6.575 11 N -0.685 5.685 12 C 0.118 3.882 13 H 0.101 0.899 14 C -0.179 4.179 15 H 0.127 0.873 16 C 0.190 3.810 17 N -0.617 5.617 18 C -0.245 4.245 19 H 0.083 0.917 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.984 3.016 23 H -0.274 1.274 24 H -0.294 1.294 25 H -0.276 1.276 26 C 0.148 3.852 27 C -0.168 4.168 28 H 0.136 0.864 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.416 0.584 41 H 0.059 0.941 42 H -0.007 1.007 43 H 0.251 0.749 44 H 0.016 0.984 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.888 5.783 -21.588 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.089 4.089 4 H 0.072 0.928 5 C -0.201 4.201 6 C -0.118 4.118 7 H 0.139 0.861 8 C -0.202 4.202 9 C 0.302 3.698 10 O -0.454 6.454 11 N -0.335 5.335 12 C 0.011 3.989 13 H 0.119 0.881 14 C -0.200 4.200 15 H 0.145 0.855 16 C 0.064 3.936 17 N -0.341 5.341 18 C -0.373 4.373 19 H 0.101 0.899 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.811 3.189 23 H -0.200 1.200 24 H -0.220 1.220 25 H -0.201 1.201 26 C 0.022 3.978 27 C -0.189 4.189 28 H 0.153 0.847 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.254 0.746 41 H 0.078 0.922 42 H 0.011 0.989 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.355 5.498 -20.852 23.922 hybrid contribution 0.957 -0.198 1.082 1.458 sum -9.397 5.300 -19.770 22.522 Atomic orbital electron populations 1.21750 0.95574 1.01393 1.01663 1.21801 0.96544 0.96823 1.02044 1.20936 0.92319 0.96535 0.99148 0.92788 1.21922 1.01870 1.00831 0.95523 1.21440 0.98036 0.98448 0.93884 0.86116 1.21876 1.01776 0.92827 1.03714 1.21489 0.81449 0.78184 0.88714 1.90648 1.50724 1.50211 1.53834 1.45280 1.08125 1.58871 1.21190 1.21328 0.91217 0.98077 0.88282 0.88110 1.24338 0.99384 0.99418 0.96822 0.85507 1.20746 0.95513 0.87275 0.90113 1.45449 1.39903 1.06394 1.42322 1.19379 1.09643 1.05396 1.02907 0.89912 1.25794 1.02781 0.99021 0.98021 1.70099 1.41102 1.22114 1.26289 0.85086 0.78972 0.77325 0.77518 1.19962 1.21965 1.20131 1.21248 0.93835 0.94402 0.88282 1.24248 1.02629 0.91986 1.00065 0.84672 0.91210 0.94025 0.93124 0.92500 0.91723 0.91477 0.92031 0.91221 0.90979 0.88753 0.93391 0.74637 0.92220 0.98922 0.94038 0.96647 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.67 71.98 0.70 -2.01 16 2 C -0.13 -2.79 5.14 30.59 0.16 -2.63 16 3 C -0.07 -1.25 1.62 -10.79 -0.02 -1.27 16 4 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 5 C -0.14 -1.64 8.60 71.98 0.62 -1.03 16 6 C -0.10 -1.59 2.32 -11.54 -0.03 -1.62 16 7 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 8 C -0.14 -1.79 8.74 71.98 0.63 -1.16 16 9 C 0.51 13.26 6.83 87.66 0.60 13.86 16 10 O -0.58 -20.28 13.24 -3.05 -0.04 -20.32 16 11 N -0.68 -16.75 5.45 -442.54 -2.41 -19.16 16 12 C 0.12 3.95 5.98 44.99 0.27 4.22 16 13 H 0.10 4.06 7.40 -2.38 -0.02 4.05 16 14 C -0.18 -6.64 7.05 -9.93 -0.07 -6.71 16 15 H 0.13 4.09 8.14 -2.39 -0.02 4.07 16 16 C 0.19 9.56 5.69 86.56 0.49 10.06 16 17 N -0.62 -32.61 3.38 -688.49 -2.32 -34.93 16 18 C -0.24 -13.90 10.35 84.03 0.87 -13.03 16 19 H 0.08 4.46 7.84 -2.91 -0.02 4.43 16 20 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 21 N -0.95 -57.77 10.87 21.65 0.24 -57.53 16 22 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 26 C 0.15 6.36 7.04 86.54 0.61 6.96 16 27 C -0.17 -5.77 7.05 -9.93 -0.07 -5.84 16 28 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 29 H 0.07 1.00 6.57 -2.39 -0.02 0.98 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 1.61 5.41 -2.39 -0.01 1.60 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.69 6.57 -2.38 -0.02 0.67 16 36 H 0.07 0.63 6.43 -2.39 -0.02 0.62 16 37 H 0.07 0.74 7.56 -2.39 -0.02 0.72 16 38 H 0.09 0.75 6.43 -2.39 -0.02 0.74 16 39 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.42 7.19 8.24 -92.71 -0.76 6.43 16 41 H 0.06 3.36 6.51 -2.39 -0.02 3.34 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -71.52 350.23 2.90 -68.62 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.20 Total: 18.99 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 5.21 Total: -3.32 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -4.50 Total: -111.62 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.04 Total: -20.32 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.52 2.90 -68.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662075088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.996 kcal (2) G-P(sol) polarization free energy of solvation -71.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds