Wall clock time and date at job start Tue Mar 31 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47145 * 2 1 4 4 C 1.52996 * 109.47406 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47355 * 300.00200 * 4 2 1 6 6 C 1.53001 * 109.47372 * 179.97438 * 4 2 1 7 7 N 1.46493 * 109.47084 * 184.99895 * 6 4 2 8 8 C 1.34784 * 119.99864 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 6 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 6 11 11 C 1.53002 * 110.91599 * 56.03405 * 10 8 7 12 12 C 1.54631 * 111.03988 * 292.02347 * 10 8 7 13 13 C 1.51099 * 104.72610 * 266.60351 * 12 10 8 14 14 C 1.30531 * 111.10496 * 343.56028 * 13 12 10 15 15 C 1.51099 * 111.10227 * 0.02562 * 14 13 12 16 16 N 1.46505 * 109.47008 * 59.99731 * 4 2 1 17 17 C 1.36930 * 120.00245 * 275.00136 * 16 4 2 18 18 H 1.07998 * 120.00090 * 0.02562 * 17 16 4 19 19 C 1.38813 * 120.00309 * 180.02562 * 17 16 4 20 20 N 1.31621 * 119.99671 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00242 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47339 * 90.00017 * 21 19 17 23 23 H 1.48504 * 109.47323 * 209.99757 * 21 19 17 24 24 H 1.48499 * 109.47377 * 329.99562 * 21 19 17 25 25 H 1.08995 * 109.47015 * 299.99809 * 1 2 3 26 26 H 1.08998 * 109.46978 * 59.99358 * 1 2 3 27 27 H 1.08994 * 109.47281 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46865 * 240.00457 * 2 1 3 29 29 H 1.08996 * 109.46839 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46871 * 300.00542 * 3 2 1 31 31 H 1.09000 * 109.46595 * 60.00426 * 3 2 1 32 32 H 1.09007 * 109.46593 * 65.00152 * 6 4 2 33 33 H 1.09006 * 109.47216 * 305.00611 * 6 4 2 34 34 H 0.97000 * 120.00740 * 359.72857 * 7 6 4 35 35 H 1.08997 * 109.46881 * 60.70266 * 11 10 8 36 36 H 1.09001 * 109.47231 * 180.70035 * 11 10 8 37 37 H 1.08994 * 109.46920 * 300.70242 * 11 10 8 38 38 H 1.09002 * 110.38619 * 25.41122 * 12 10 8 39 39 H 1.09001 * 110.39118 * 147.78800 * 12 10 8 40 40 H 1.08006 * 124.44858 * 163.57797 * 13 12 10 41 41 H 1.07998 * 124.44741 * 180.02562 * 14 13 12 42 42 H 1.09000 * 110.38174 * 257.62581 * 15 14 13 43 43 H 1.09000 * 110.48552 * 135.29850 * 15 14 13 44 44 H 0.97003 * 119.99576 * 94.99758 * 16 4 2 45 45 H 0.97006 * 119.99781 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0583 -1.5141 2.3802 8 6 5.3835 -1.6554 2.5819 9 8 6.1716 -1.1306 1.8239 10 6 5.8858 -2.4652 3.7493 11 6 5.3140 -3.8840 3.7162 12 6 5.5618 -1.7665 5.0901 13 6 6.7946 -0.9523 5.4068 14 6 7.8144 -1.3472 4.6940 15 6 7.4314 -2.4900 3.7828 16 7 1.5517 -2.1025 1.2491 17 6 0.3102 -2.3898 1.7503 18 1 -0.3091 -1.5981 2.1452 19 6 -0.1523 -3.6986 1.7507 20 7 0.6023 -4.6634 1.2689 21 14 -1.8462 -4.0904 2.4338 22 1 -2.8524 -3.9977 1.3455 23 1 -1.8481 -5.4658 2.9938 24 1 -2.1847 -3.1193 3.5050 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9337 0.3019 1.3382 33 1 3.9331 -1.1563 0.3173 34 1 3.4281 -1.9334 2.9866 35 1 5.6273 -4.3806 2.7979 36 1 5.6818 -4.4442 4.5758 37 1 4.2256 -3.8379 3.7512 38 1 4.6948 -1.1151 4.9791 39 1 5.3844 -2.5062 5.8708 40 1 6.8278 -0.1493 6.1283 41 1 8.8022 -0.9139 4.7485 42 1 7.7867 -3.4363 4.1909 43 1 7.8360 -2.3327 2.7830 44 1 2.1078 -2.8135 0.8940 45 1 0.2789 -5.5780 1.2689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667492767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:33 Heat of formation + Delta-G solvation = -27.494681 kcal Electronic energy + Delta-G solvation = -23040.924710 eV Core-core repulsion = 19865.209815 eV Total energy + Delta-G solvation = -3175.714895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.31759 -37.87521 -36.82419 -33.87027 -33.12797 -31.72634 -30.32319 -28.32304 -27.77394 -26.11306 -25.45814 -23.96582 -22.53032 -21.24083 -19.61567 -18.86847 -18.75243 -17.29325 -16.67220 -15.79025 -15.44872 -15.11469 -14.61282 -14.25300 -13.93202 -13.52520 -13.35541 -13.06554 -12.77095 -12.71466 -12.58991 -12.13960 -12.09404 -12.04133 -11.94624 -11.62931 -11.18948 -11.13855 -11.00332 -10.94297 -10.84636 -10.65242 -10.55096 -10.29059 -10.11542 -9.95064 -9.55893 -9.39573 -8.94509 -8.84854 -8.53221 -7.03982 -5.83398 -3.12372 2.29601 3.01500 3.37950 3.44196 3.45583 3.61515 4.49741 4.52486 4.66511 4.92926 5.20244 5.26423 5.34377 5.39718 5.49699 5.54492 5.63571 5.68021 5.71951 5.76397 5.80097 5.88797 5.92473 5.96476 6.02468 6.07843 6.16118 6.20086 6.25414 6.35834 6.37890 6.46991 6.54271 6.54453 6.63312 6.69850 6.91042 6.98420 7.07708 7.28880 7.65251 8.01680 8.33932 8.65420 9.46054 10.01041 10.37319 11.38346 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.005423 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.237335 B = 5162.151658 C = 6408.987074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.053 0.947 6 C 0.114 3.886 7 N -0.710 5.710 8 C 0.527 3.473 9 O -0.552 6.552 10 C -0.087 4.087 11 C -0.136 4.136 12 C -0.087 4.087 13 C -0.176 4.176 14 C -0.154 4.154 15 C -0.085 4.085 16 N -0.721 5.721 17 C -0.236 4.236 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.409 0.591 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.346 6.343 5.819 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.071 0.929 6 C -0.011 4.011 7 N -0.361 5.361 8 C 0.312 3.688 9 O -0.431 6.431 10 C -0.090 4.090 11 C -0.194 4.194 12 C -0.124 4.124 13 C -0.194 4.194 14 C -0.172 4.172 15 C -0.122 4.122 16 N -0.362 5.362 17 C -0.367 4.367 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.704 6.686 5.358 12.946 hybrid contribution -1.151 -0.608 0.430 1.371 sum 8.553 6.078 5.788 11.984 Atomic orbital electron populations 1.21815 0.94954 1.03871 0.98972 1.21732 0.96892 0.94411 1.00093 1.21938 1.00493 0.97346 1.00889 1.20544 0.89401 0.88180 0.95926 0.92941 1.21719 0.95573 0.94794 0.88989 1.45949 1.06664 1.52814 1.30649 1.20160 0.82482 0.80471 0.85644 1.90627 1.55645 1.49193 1.47625 1.21601 0.96994 0.96458 0.93952 1.21785 1.02083 0.92921 1.02577 1.21430 0.97457 0.98325 0.95177 1.23204 0.95328 1.00019 1.00842 1.23227 0.98830 0.97793 0.97363 1.21350 0.92714 0.97346 1.00759 1.42453 1.18051 1.01865 1.73823 1.19193 0.92799 0.92336 1.32384 0.90962 1.24714 0.98221 0.95884 1.01838 1.69663 1.36764 0.99864 1.51394 0.86280 0.84504 0.77356 0.78578 1.21783 1.21883 1.20805 0.94082 0.95021 0.89514 0.91914 0.93057 0.93588 0.93218 0.91786 0.92024 0.75396 0.91803 0.91685 0.90930 0.90735 0.89626 0.85965 0.86010 0.90230 0.89481 0.78090 0.93514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.26 37.16 0.31 -2.18 16 2 C -0.11 -1.87 2.69 -90.62 -0.24 -2.11 16 3 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16 4 C 0.17 3.11 2.18 -67.93 -0.15 2.96 16 5 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 6 C 0.11 1.96 4.73 -4.04 -0.02 1.94 16 7 N -0.71 -11.93 5.22 -60.29 -0.31 -12.25 16 8 C 0.53 8.93 6.51 -10.98 -0.07 8.86 16 9 O -0.55 -10.99 15.53 5.56 0.09 -10.91 16 10 C -0.09 -1.19 0.84 -153.95 -0.13 -1.32 16 11 C -0.14 -1.78 8.36 37.16 0.31 -1.47 16 12 C -0.09 -1.05 5.93 -26.83 -0.16 -1.21 16 13 C -0.18 -2.05 10.77 -35.70 -0.38 -2.43 16 14 C -0.15 -1.84 10.78 -35.70 -0.38 -2.22 16 15 C -0.08 -1.08 5.72 -26.83 -0.15 -1.23 16 16 N -0.72 -16.06 4.44 -53.43 -0.24 -16.30 16 17 C -0.24 -5.86 7.57 -15.06 -0.11 -5.97 16 18 H 0.07 1.77 7.39 -52.49 -0.39 1.38 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -26.19 13.06 55.49 0.72 -25.47 16 21 Si 0.90 21.18 29.55 -169.99 -5.02 16.15 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 1.84 6.01 -51.93 -0.31 1.52 16 28 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 29 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.05 6.71 -51.93 -0.35 0.70 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.41 6.94 7.42 -40.82 -0.30 6.64 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.07 1.04 7.46 -51.93 -0.39 0.65 16 38 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 39 H 0.09 0.91 7.88 -51.93 -0.41 0.50 16 40 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 43 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 44 H 0.39 9.45 7.80 -40.82 -0.32 9.13 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -28.37 355.38 -8.13 -36.50 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -7.77 Total: 15.45 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.96 Total: -8.54 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.17 Total: -54.01 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.37 -8.13 -36.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667492767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.010 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds