Wall clock time and date at job start Tue Mar 31 2020 01:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47145 * 2 1 4 4 C 1.52996 * 109.47406 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47355 * 300.00200 * 4 2 1 6 6 C 1.53001 * 109.47372 * 179.97438 * 4 2 1 7 7 N 1.46493 * 109.47084 * 184.99895 * 6 4 2 8 8 C 1.34784 * 119.99864 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 6 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 6 11 11 C 1.53002 * 110.91599 * 56.03405 * 10 8 7 12 12 C 1.54631 * 111.03988 * 292.02347 * 10 8 7 13 13 C 1.51099 * 104.72610 * 266.60351 * 12 10 8 14 14 C 1.30531 * 111.10496 * 343.56028 * 13 12 10 15 15 C 1.51099 * 111.10227 * 0.02562 * 14 13 12 16 16 N 1.46505 * 109.47008 * 59.99731 * 4 2 1 17 17 C 1.36930 * 120.00245 * 275.00136 * 16 4 2 18 18 H 1.07998 * 120.00090 * 0.02562 * 17 16 4 19 19 C 1.38813 * 120.00309 * 180.02562 * 17 16 4 20 20 N 1.31621 * 119.99671 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00242 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47339 * 90.00017 * 21 19 17 23 23 H 1.48504 * 109.47323 * 209.99757 * 21 19 17 24 24 H 1.48499 * 109.47377 * 329.99562 * 21 19 17 25 25 H 1.08995 * 109.47015 * 299.99809 * 1 2 3 26 26 H 1.08998 * 109.46978 * 59.99358 * 1 2 3 27 27 H 1.08994 * 109.47281 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46865 * 240.00457 * 2 1 3 29 29 H 1.08996 * 109.46839 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46871 * 300.00542 * 3 2 1 31 31 H 1.09000 * 109.46595 * 60.00426 * 3 2 1 32 32 H 1.09007 * 109.46593 * 65.00152 * 6 4 2 33 33 H 1.09006 * 109.47216 * 305.00611 * 6 4 2 34 34 H 0.97000 * 120.00740 * 359.72857 * 7 6 4 35 35 H 1.08997 * 109.46881 * 60.70266 * 11 10 8 36 36 H 1.09001 * 109.47231 * 180.70035 * 11 10 8 37 37 H 1.08994 * 109.46920 * 300.70242 * 11 10 8 38 38 H 1.09002 * 110.38619 * 25.41122 * 12 10 8 39 39 H 1.09001 * 110.39118 * 147.78800 * 12 10 8 40 40 H 1.08006 * 124.44858 * 163.57797 * 13 12 10 41 41 H 1.07998 * 124.44741 * 180.02562 * 14 13 12 42 42 H 1.09000 * 110.38174 * 257.62581 * 15 14 13 43 43 H 1.09000 * 110.48552 * 135.29850 * 15 14 13 44 44 H 0.97003 * 119.99576 * 94.99758 * 16 4 2 45 45 H 0.97006 * 119.99781 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2076 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0583 -1.5141 2.3802 8 6 5.3835 -1.6554 2.5819 9 8 6.1716 -1.1306 1.8239 10 6 5.8858 -2.4652 3.7493 11 6 5.3140 -3.8840 3.7162 12 6 5.5618 -1.7665 5.0901 13 6 6.7946 -0.9523 5.4068 14 6 7.8144 -1.3472 4.6940 15 6 7.4314 -2.4900 3.7828 16 7 1.5517 -2.1025 1.2491 17 6 0.3102 -2.3898 1.7503 18 1 -0.3091 -1.5981 2.1452 19 6 -0.1523 -3.6986 1.7507 20 7 0.6023 -4.6634 1.2689 21 14 -1.8462 -4.0904 2.4338 22 1 -2.8524 -3.9977 1.3455 23 1 -1.8481 -5.4658 2.9938 24 1 -2.1847 -3.1193 3.5050 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9337 0.3019 1.3382 33 1 3.9331 -1.1563 0.3173 34 1 3.4281 -1.9334 2.9866 35 1 5.6273 -4.3806 2.7979 36 1 5.6818 -4.4442 4.5758 37 1 4.2256 -3.8379 3.7512 38 1 4.6948 -1.1151 4.9791 39 1 5.3844 -2.5062 5.8708 40 1 6.8278 -0.1493 6.1283 41 1 8.8022 -0.9139 4.7485 42 1 7.7867 -3.4363 4.1909 43 1 7.8360 -2.3327 2.7830 44 1 2.1078 -2.8135 0.8940 45 1 0.2789 -5.5780 1.2689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667492767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:32 Heat of formation + Delta-G solvation = -44.005400 kcal Electronic energy + Delta-G solvation = -23041.640668 eV Core-core repulsion = 19865.209815 eV Total energy + Delta-G solvation = -3176.430854 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54221 -39.22317 -38.19053 -35.31401 -34.90971 -32.82553 -32.05345 -29.61629 -28.97995 -27.47360 -26.51100 -25.69102 -23.99718 -22.61535 -21.03131 -20.14817 -19.77089 -19.06432 -17.92540 -17.12951 -16.93229 -16.42032 -16.08348 -15.59133 -15.54964 -15.03713 -14.92905 -14.41266 -14.00513 -13.93142 -13.62915 -13.60783 -13.39424 -13.13219 -13.03065 -12.90640 -12.82697 -12.71507 -12.48313 -12.25894 -12.17170 -12.05905 -11.97675 -11.77019 -11.61154 -11.43897 -11.28018 -10.88015 -10.69029 -9.99540 -9.76016 -8.94077 -7.85513 -5.12506 1.40128 1.50886 1.52901 1.59271 1.67451 2.29753 2.61269 3.46829 3.47850 3.66066 3.78645 3.87679 3.93966 4.12385 4.29911 4.31968 4.36230 4.44537 4.50002 4.63658 4.68932 4.75987 4.78466 4.84379 4.91643 4.92538 4.97332 5.00971 5.06126 5.07906 5.15236 5.16057 5.26385 5.28789 5.33770 5.55395 5.61988 5.64802 5.65569 5.77467 6.02275 6.34261 6.63255 7.28350 7.42529 8.13264 8.39199 9.37259 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.005423 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.237335 B = 5162.151658 C = 6408.987074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.173 3.827 5 H 0.057 0.943 6 C 0.122 3.878 7 N -0.708 5.708 8 C 0.523 3.477 9 O -0.585 6.585 10 C -0.087 4.087 11 C -0.131 4.131 12 C -0.085 4.085 13 C -0.177 4.177 14 C -0.165 4.165 15 C -0.085 4.085 16 N -0.726 5.726 17 C -0.214 4.214 18 H 0.079 0.921 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.957 3.043 22 H -0.296 1.296 23 H -0.302 1.302 24 H -0.269 1.269 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.409 0.591 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.372 0.628 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.497 7.917 7.211 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.065 3.935 5 H 0.075 0.925 6 C -0.002 4.002 7 N -0.359 5.359 8 C 0.310 3.690 9 O -0.466 6.466 10 C -0.090 4.090 11 C -0.188 4.188 12 C -0.123 4.123 13 C -0.195 4.195 14 C -0.183 4.183 15 C -0.122 4.122 16 N -0.365 5.365 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.262 4.262 20 N -0.617 5.617 21 Si 0.788 3.212 22 H -0.224 1.224 23 H -0.229 1.229 24 H -0.194 1.194 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.246 0.754 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.204 0.796 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.845 8.315 6.766 14.555 hybrid contribution -1.174 -1.010 -0.050 1.549 sum 8.671 7.305 6.716 13.178 Atomic orbital electron populations 1.21723 0.95321 1.01760 1.00302 1.21635 0.96468 0.96276 0.98480 1.21845 1.00793 0.94981 1.02179 1.20666 0.90001 0.86177 0.96704 0.92548 1.21600 0.94635 0.95422 0.88589 1.45966 1.06891 1.52661 1.30367 1.20780 0.82011 0.80108 0.86111 1.90606 1.56274 1.50681 1.49017 1.21633 0.97714 0.96192 0.93458 1.21752 1.01043 0.92856 1.03195 1.21469 0.97616 0.98722 0.94460 1.23405 0.94703 1.00252 1.01113 1.23382 0.99892 0.97726 0.97265 1.21368 0.91775 0.99017 1.00039 1.42550 1.17238 1.03265 1.73489 1.19457 0.93185 0.92077 1.29887 0.90347 1.25321 1.01101 0.96178 1.03567 1.69806 1.38260 0.99708 1.53970 0.85380 0.81151 0.76704 0.77975 1.22388 1.22932 1.19430 0.93378 0.93094 0.93196 0.93279 0.92525 0.92076 0.92173 0.90426 0.93645 0.75406 0.93033 0.88984 0.92466 0.91227 0.87716 0.83998 0.84417 0.88239 0.91679 0.79599 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 8.26 71.98 0.59 -3.99 16 2 C -0.11 -3.51 2.69 -10.79 -0.03 -3.54 16 3 C -0.14 -3.60 8.84 71.98 0.64 -2.97 16 4 C 0.17 6.20 2.18 44.99 0.10 6.30 16 5 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 6 C 0.12 4.15 4.73 86.38 0.41 4.56 16 7 N -0.71 -23.75 5.22 -463.05 -2.42 -26.17 16 8 C 0.52 17.66 6.51 87.65 0.57 18.23 16 9 O -0.58 -23.42 15.53 -3.04 -0.05 -23.46 16 10 C -0.09 -2.30 0.84 -51.82 -0.04 -2.35 16 11 C -0.13 -3.33 8.36 71.98 0.60 -2.73 16 12 C -0.09 -1.90 5.93 30.53 0.18 -1.72 16 13 C -0.18 -3.69 10.77 26.26 0.28 -3.41 16 14 C -0.16 -3.61 10.78 26.26 0.28 -3.33 16 15 C -0.08 -2.07 5.72 30.53 0.17 -1.90 16 16 N -0.73 -32.52 4.44 -322.94 -1.43 -33.95 16 17 C -0.21 -10.59 7.57 84.03 0.64 -9.95 16 18 H 0.08 3.74 7.39 -2.91 -0.02 3.72 16 19 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 20 N -0.97 -55.74 13.06 21.65 0.28 -55.46 16 21 Si 0.96 43.83 29.55 68.60 2.03 45.85 16 22 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 28 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.06 1.40 6.55 -2.39 -0.02 1.39 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 2.45 6.71 -2.38 -0.02 2.43 16 33 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.41 13.85 7.42 -92.71 -0.69 13.16 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.82 8.12 -2.39 -0.02 1.80 16 37 H 0.06 1.63 7.46 -2.39 -0.02 1.61 16 38 H 0.07 1.62 7.85 -2.39 -0.02 1.60 16 39 H 0.10 1.93 7.88 -2.39 -0.02 1.91 16 40 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 41 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 42 H 0.10 1.99 7.89 -2.39 -0.02 1.97 16 43 H 0.06 1.89 7.01 -2.39 -0.02 1.87 16 44 H 0.37 18.69 7.80 -92.71 -0.72 17.97 16 45 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 Total: -1.00 -61.11 355.38 2.83 -58.28 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -0.44 Total: 44.92 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.86 Total: -10.00 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -3.57 Total: -115.59 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -61.11 2.83 -58.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667492767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.272 kcal (2) G-P(sol) polarization free energy of solvation -61.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds