Wall clock time and date at job start Tue Mar 31 2020 02:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32991 * 119.99779 * 2 1 4 4 C 1.47107 * 119.99703 * 171.66027 * 3 2 1 5 5 O 1.21611 * 119.99818 * 5.98674 * 4 3 2 6 6 N 1.34773 * 119.99875 * 185.98764 * 4 3 2 7 7 C 1.46501 * 120.00114 * 0.02562 * 6 4 3 8 8 C 1.46503 * 119.99890 * 179.97438 * 6 4 3 9 9 C 1.53001 * 109.47206 * 269.99971 * 8 6 4 10 10 C 1.52999 * 109.47330 * 180.02562 * 9 8 6 11 11 N 1.46499 * 109.47274 * 180.02562 * 10 9 8 12 12 C 1.46502 * 120.00154 * 89.99513 * 11 10 9 13 13 C 1.36938 * 119.99872 * 269.99912 * 11 10 9 14 14 H 1.07997 * 119.99745 * 143.78029 * 13 11 10 15 15 C 1.38810 * 119.99854 * 323.77611 * 13 11 10 16 16 N 1.31620 * 119.99531 * 155.32507 * 15 13 11 17 17 Si 1.86797 * 120.00246 * 335.32882 * 15 13 11 18 18 H 1.48501 * 109.47135 * 95.23119 * 17 15 13 19 19 H 1.48500 * 109.47031 * 215.22910 * 17 15 13 20 20 H 1.48494 * 109.46927 * 335.22608 * 17 15 13 21 21 C 1.50695 * 120.00000 * 179.97438 * 2 1 3 22 22 C 1.53002 * 117.49786 * 355.82511 * 21 2 1 23 23 C 1.53007 * 117.49874 * 287.16688 * 21 2 1 24 24 H 1.09000 * 109.46997 * 90.00209 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00135 * 1 2 3 26 26 H 1.08999 * 109.46775 * 330.00398 * 1 2 3 27 27 H 1.07997 * 120.00412 * 351.65620 * 3 2 1 28 28 H 1.09005 * 109.46882 * 269.99667 * 7 6 4 29 29 H 1.08997 * 109.47393 * 29.99915 * 7 6 4 30 30 H 1.09004 * 109.46940 * 150.00266 * 7 6 4 31 31 H 1.08994 * 109.46993 * 30.00072 * 8 6 4 32 32 H 1.09007 * 109.47002 * 150.00192 * 8 6 4 33 33 H 1.09003 * 109.46989 * 300.00066 * 9 8 6 34 34 H 1.09004 * 109.46947 * 59.99672 * 9 8 6 35 35 H 1.09003 * 109.46987 * 299.99882 * 10 9 8 36 36 H 1.08995 * 109.47307 * 59.99806 * 10 9 8 37 37 H 1.08999 * 109.46685 * 85.12510 * 12 11 10 38 38 H 1.08997 * 109.47553 * 205.12939 * 12 11 10 39 39 H 1.08996 * 109.47304 * 325.13674 * 12 11 10 40 40 H 0.96998 * 119.99691 * 179.97438 * 16 15 13 41 41 H 1.09002 * 115.55375 * 141.49866 * 21 2 1 42 42 H 1.09004 * 117.50266 * 0.02562 * 22 21 2 43 43 H 1.09002 * 117.49979 * 145.02415 * 22 21 2 44 44 H 1.08999 * 117.49927 * 214.97775 * 23 21 2 45 45 H 1.09006 * 117.49712 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6314 1.1585 0.1848 5 8 4.2435 0.1086 0.2284 6 7 4.2899 2.3281 0.3057 7 6 3.5523 3.5928 0.2537 8 6 5.7432 2.3348 0.4903 9 6 6.0677 2.2914 1.9849 10 6 7.5855 2.2990 2.1777 11 7 7.8962 2.2569 3.6088 12 6 8.0629 0.9677 4.2845 13 6 8.0307 3.4225 4.3148 14 1 7.6857 3.4776 5.3367 15 6 8.6107 4.5330 3.7170 16 7 8.3252 5.7406 4.1557 17 14 9.7960 4.3134 2.2902 18 1 9.0596 4.4557 1.0085 19 1 10.8599 5.3466 2.3670 20 1 10.4109 2.9636 2.3607 21 6 2.2605 -1.3051 0.0006 22 6 1.4415 -2.5936 0.1000 23 6 2.2668 -2.1166 1.2977 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6406 2.0821 -0.1357 28 1 3.4979 3.9395 -0.7783 29 1 2.5443 3.4418 0.6399 30 1 4.0660 4.3383 0.8608 31 1 6.1758 1.4633 -0.0009 32 1 6.1607 3.2424 0.0541 33 1 5.6351 3.1630 2.4761 34 1 5.6502 1.3839 2.4211 35 1 8.0185 1.4276 1.6865 36 1 8.0026 3.2066 1.7416 37 1 9.0892 0.6224 4.1600 38 1 7.8445 1.0830 5.3461 39 1 7.3791 0.2386 3.8499 40 1 8.7307 6.5166 3.7382 41 1 3.1621 -1.3277 -0.6116 42 1 0.3576 -2.4974 0.1645 43 1 1.8045 -3.4641 -0.4465 44 1 3.1724 -2.6734 1.5386 45 1 1.7263 -1.7063 2.1507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673420683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:14 Heat of formation + Delta-G solvation = 35.984378 kcal Electronic energy + Delta-G solvation = -22370.596823 eV Core-core repulsion = 19197.634586 eV Total energy + Delta-G solvation = -3172.962237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.95882 -37.91996 -36.31925 -35.22191 -33.56990 -31.94101 -31.05230 -28.31650 -26.98593 -26.15186 -25.31470 -23.34079 -22.39042 -21.83707 -20.58550 -19.74352 -18.18545 -17.16013 -16.71317 -16.11257 -15.47116 -15.22883 -14.98422 -14.50612 -14.04680 -13.80249 -13.40933 -13.28739 -13.15685 -12.97800 -12.81072 -12.61427 -12.43883 -12.25427 -11.85969 -11.76305 -11.66626 -11.39289 -11.26091 -11.04083 -10.78163 -10.75408 -10.43730 -10.37310 -10.32248 -9.71475 -9.45375 -9.33344 -9.00277 -8.48527 -8.36950 -6.77538 -5.98338 -3.34725 1.26993 3.20249 3.31439 3.40641 3.48321 3.56109 3.87627 4.43165 4.55301 4.56977 4.85556 4.92542 5.02473 5.06526 5.12108 5.25330 5.27553 5.34671 5.40252 5.46708 5.48450 5.53598 5.65565 5.77324 5.82163 5.88747 6.03191 6.04423 6.07126 6.17388 6.24365 6.25948 6.38193 6.44297 6.47941 6.62736 6.77180 6.83007 6.89331 7.12243 7.61370 8.08114 8.39553 8.41085 9.03062 9.75114 10.17745 11.17763 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023964 B = 0.003955 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.126908 B = 7078.770454 C = 7607.917679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.009 4.009 3 C -0.225 4.225 4 C 0.544 3.456 5 O -0.538 6.538 6 N -0.610 5.610 7 C 0.077 3.923 8 C 0.115 3.885 9 C -0.144 4.144 10 C 0.143 3.857 11 N -0.613 5.613 12 C 0.125 3.875 13 C -0.267 4.267 14 H 0.078 0.922 15 C 0.035 3.965 16 N -0.900 5.900 17 Si 0.875 3.125 18 H -0.285 1.285 19 H -0.301 1.301 20 H -0.271 1.271 21 C -0.115 4.115 22 C -0.192 4.192 23 C -0.155 4.155 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.128 0.872 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.006 0.994 38 H 0.044 0.956 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.135 0.865 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.280 -10.157 -11.089 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.011 4.011 3 C -0.246 4.246 4 C 0.335 3.665 5 O -0.417 6.417 6 N -0.343 5.343 7 C -0.066 4.066 8 C -0.008 4.008 9 C -0.185 4.185 10 C 0.016 3.984 11 N -0.337 5.337 12 C -0.020 4.020 13 C -0.395 4.395 14 H 0.095 0.905 15 C -0.165 4.165 16 N -0.541 5.541 17 Si 0.705 3.295 18 H -0.214 1.214 19 H -0.229 1.229 20 H -0.195 1.195 21 C -0.133 4.133 22 C -0.229 4.229 23 C -0.192 4.192 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.146 0.854 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.152 0.848 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.891 -10.517 -11.033 22.019 hybrid contribution 0.674 0.359 -0.745 1.066 sum -15.217 -10.158 -11.778 21.759 Atomic orbital electron populations 1.21012 0.91265 1.03261 1.02881 1.21822 0.95103 0.93455 0.90692 1.22486 0.93890 0.98545 1.09641 1.18512 0.87824 0.83350 0.76832 1.90720 1.69394 1.30666 1.50951 1.47813 1.08400 1.06049 1.72001 1.21831 0.97168 0.86092 1.01547 1.21575 0.78572 1.02444 0.98161 1.22437 0.99911 1.02394 0.93782 1.21049 0.92308 0.99071 0.85952 1.44051 1.81730 1.02579 1.05320 1.21062 0.96880 0.87322 0.96765 1.18820 1.34469 0.87357 0.98898 0.90492 1.25418 0.98049 0.95142 0.97940 1.69912 1.43197 0.97427 1.43592 0.86975 0.82412 0.77628 0.82463 1.21354 1.22945 1.19544 1.21455 1.00684 0.88146 1.03027 1.23155 0.98312 0.98269 1.03190 1.22805 1.02084 1.02711 0.91564 0.90408 0.90765 0.91016 0.85405 0.92870 0.91117 0.90458 0.90336 0.90933 0.91325 0.92489 0.94371 0.92964 0.97627 0.93738 0.95410 0.92809 0.84759 0.88774 0.88781 0.88480 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.62 36.01 0.35 -0.59 16 2 C -0.01 -0.10 5.80 -101.17 -0.59 -0.68 16 3 C -0.22 -2.66 8.74 -37.80 -0.33 -2.99 16 4 C 0.54 8.37 7.59 -12.66 -0.10 8.27 16 5 O -0.54 -9.71 12.83 5.27 0.07 -9.64 16 6 N -0.61 -9.13 2.87 -182.97 -0.53 -9.66 16 7 C 0.08 0.88 10.11 59.85 0.61 1.48 16 8 C 0.12 1.95 5.41 -4.04 -0.02 1.93 16 9 C -0.14 -2.90 5.86 -26.73 -0.16 -3.06 16 10 C 0.14 3.22 4.56 -4.04 -0.02 3.20 16 11 N -0.61 -15.41 2.50 -181.13 -0.45 -15.86 16 12 C 0.12 2.69 10.70 59.85 0.64 3.33 16 13 C -0.27 -7.68 9.88 -15.06 -0.15 -7.83 16 14 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 15 C 0.03 1.01 5.27 -17.43 -0.09 0.92 16 16 N -0.90 -27.50 13.97 55.49 0.78 -26.72 16 17 Si 0.87 22.49 25.16 -169.99 -4.28 18.21 16 18 H -0.29 -6.98 6.63 56.52 0.37 -6.60 16 19 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 20 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.12 -1.38 4.25 -91.77 -0.39 -1.77 16 22 C -0.19 -1.79 9.83 -26.69 -0.26 -2.05 16 23 C -0.15 -1.76 10.24 -26.69 -0.27 -2.03 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.49 6.13 -51.93 -0.32 0.18 16 26 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 27 H 0.13 1.18 6.34 -52.49 -0.33 0.85 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.67 6.18 -51.93 -0.32 0.35 16 30 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 32 H 0.07 1.16 8.07 -51.92 -0.42 0.74 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.05 1.26 3.27 -51.93 -0.17 1.09 16 37 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 38 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 39 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.13 1.92 6.34 -51.93 -0.33 1.59 16 42 H 0.09 0.72 6.18 -51.93 -0.32 0.40 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -32.95 357.80 -7.46 -40.41 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.66 Total: -0.27 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.78 Total: -1.86 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.20 Total: -52.24 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.28 Total: 18.21 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.95 -7.46 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673420683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.392 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds