Wall clock time and date at job start Tue Mar 31 2020 02:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32991 * 119.99779 * 2 1 4 4 C 1.47107 * 119.99703 * 171.66027 * 3 2 1 5 5 O 1.21611 * 119.99818 * 5.98674 * 4 3 2 6 6 N 1.34773 * 119.99875 * 185.98764 * 4 3 2 7 7 C 1.46501 * 120.00114 * 0.02562 * 6 4 3 8 8 C 1.46503 * 119.99890 * 179.97438 * 6 4 3 9 9 C 1.53001 * 109.47206 * 269.99971 * 8 6 4 10 10 C 1.52999 * 109.47330 * 180.02562 * 9 8 6 11 11 N 1.46499 * 109.47274 * 180.02562 * 10 9 8 12 12 C 1.46502 * 120.00154 * 89.99513 * 11 10 9 13 13 C 1.36938 * 119.99872 * 269.99912 * 11 10 9 14 14 H 1.07997 * 119.99745 * 143.78029 * 13 11 10 15 15 C 1.38810 * 119.99854 * 323.77611 * 13 11 10 16 16 N 1.31620 * 119.99531 * 155.32507 * 15 13 11 17 17 Si 1.86797 * 120.00246 * 335.32882 * 15 13 11 18 18 H 1.48501 * 109.47135 * 95.23119 * 17 15 13 19 19 H 1.48500 * 109.47031 * 215.22910 * 17 15 13 20 20 H 1.48494 * 109.46927 * 335.22608 * 17 15 13 21 21 C 1.50695 * 120.00000 * 179.97438 * 2 1 3 22 22 C 1.53002 * 117.49786 * 355.82511 * 21 2 1 23 23 C 1.53007 * 117.49874 * 287.16688 * 21 2 1 24 24 H 1.09000 * 109.46997 * 90.00209 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00135 * 1 2 3 26 26 H 1.08999 * 109.46775 * 330.00398 * 1 2 3 27 27 H 1.07997 * 120.00412 * 351.65620 * 3 2 1 28 28 H 1.09005 * 109.46882 * 269.99667 * 7 6 4 29 29 H 1.08997 * 109.47393 * 29.99915 * 7 6 4 30 30 H 1.09004 * 109.46940 * 150.00266 * 7 6 4 31 31 H 1.08994 * 109.46993 * 30.00072 * 8 6 4 32 32 H 1.09007 * 109.47002 * 150.00192 * 8 6 4 33 33 H 1.09003 * 109.46989 * 300.00066 * 9 8 6 34 34 H 1.09004 * 109.46947 * 59.99672 * 9 8 6 35 35 H 1.09003 * 109.46987 * 299.99882 * 10 9 8 36 36 H 1.08995 * 109.47307 * 59.99806 * 10 9 8 37 37 H 1.08999 * 109.46685 * 85.12510 * 12 11 10 38 38 H 1.08997 * 109.47553 * 205.12939 * 12 11 10 39 39 H 1.08996 * 109.47304 * 325.13674 * 12 11 10 40 40 H 0.96998 * 119.99691 * 179.97438 * 16 15 13 41 41 H 1.09002 * 115.55375 * 141.49866 * 21 2 1 42 42 H 1.09004 * 117.50266 * 0.02562 * 22 21 2 43 43 H 1.09002 * 117.49979 * 145.02415 * 22 21 2 44 44 H 1.08999 * 117.49927 * 214.97775 * 23 21 2 45 45 H 1.09006 * 117.49712 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6314 1.1585 0.1848 5 8 4.2435 0.1086 0.2284 6 7 4.2899 2.3281 0.3057 7 6 3.5523 3.5928 0.2537 8 6 5.7432 2.3348 0.4903 9 6 6.0677 2.2914 1.9849 10 6 7.5855 2.2990 2.1777 11 7 7.8962 2.2569 3.6088 12 6 8.0629 0.9677 4.2845 13 6 8.0307 3.4225 4.3148 14 1 7.6857 3.4776 5.3367 15 6 8.6107 4.5330 3.7170 16 7 8.3252 5.7406 4.1557 17 14 9.7960 4.3134 2.2902 18 1 9.0596 4.4557 1.0085 19 1 10.8599 5.3466 2.3670 20 1 10.4109 2.9636 2.3607 21 6 2.2605 -1.3051 0.0006 22 6 1.4415 -2.5936 0.1000 23 6 2.2668 -2.1166 1.2977 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6406 2.0821 -0.1357 28 1 3.4979 3.9395 -0.7783 29 1 2.5443 3.4418 0.6399 30 1 4.0660 4.3383 0.8608 31 1 6.1758 1.4633 -0.0009 32 1 6.1607 3.2424 0.0541 33 1 5.6351 3.1630 2.4761 34 1 5.6502 1.3839 2.4211 35 1 8.0185 1.4276 1.6865 36 1 8.0026 3.2066 1.7416 37 1 9.0892 0.6224 4.1600 38 1 7.8445 1.0830 5.3461 39 1 7.3791 0.2386 3.8499 40 1 8.7307 6.5166 3.7382 41 1 3.1621 -1.3277 -0.6116 42 1 0.3576 -2.4974 0.1645 43 1 1.8045 -3.4641 -0.4465 44 1 3.1724 -2.6734 1.5386 45 1 1.7263 -1.7063 2.1507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673420683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:13 Heat of formation + Delta-G solvation = 16.702428 kcal Electronic energy + Delta-G solvation = -22371.432951 eV Core-core repulsion = 19197.634586 eV Total energy + Delta-G solvation = -3173.798365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06733 -38.88670 -38.05966 -36.56092 -34.47531 -33.91719 -32.73206 -29.21590 -28.29026 -27.86273 -26.71897 -24.50942 -23.41254 -23.12520 -22.46719 -20.83543 -19.13697 -18.79998 -18.20201 -17.35906 -17.16649 -16.44722 -16.18836 -15.74859 -15.68264 -15.09899 -14.99945 -14.64763 -14.36155 -14.01482 -13.95768 -13.86519 -13.80867 -13.43934 -13.16889 -13.04434 -12.97930 -12.79534 -12.59178 -12.46138 -12.28581 -12.18427 -12.15650 -11.76196 -11.60036 -11.37492 -11.26285 -10.63406 -10.42409 -9.93052 -9.54246 -8.81571 -8.23286 -5.58384 0.36821 1.27413 1.40064 1.51993 2.08685 2.33444 2.40218 2.99975 3.03765 3.40957 3.60229 3.70643 3.97597 4.05475 4.12421 4.23625 4.25431 4.28897 4.40739 4.44651 4.48491 4.62212 4.64763 4.65785 4.71023 4.74274 4.77204 4.82552 4.91609 4.94286 4.96587 5.03234 5.07353 5.16063 5.23800 5.28145 5.37096 5.43950 5.56839 5.68691 5.90885 6.11879 6.51049 6.94502 7.27267 7.59512 8.03078 8.96738 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023964 B = 0.003955 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.126908 B = 7078.770454 C = 7607.917679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.002 3.998 3 C -0.243 4.243 4 C 0.533 3.467 5 O -0.575 6.575 6 N -0.616 5.616 7 C 0.073 3.927 8 C 0.123 3.877 9 C -0.125 4.125 10 C 0.139 3.861 11 N -0.628 5.628 12 C 0.124 3.876 13 C -0.268 4.268 14 H 0.040 0.960 15 C -0.013 4.013 16 N -0.942 5.942 17 Si 0.938 3.062 18 H -0.264 1.264 19 H -0.303 1.303 20 H -0.268 1.268 21 C -0.138 4.138 22 C -0.163 4.163 23 C -0.170 4.170 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.017 0.983 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.265 0.735 41 H 0.104 0.896 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.079 -11.003 -13.110 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.001 3.999 3 C -0.264 4.264 4 C 0.326 3.674 5 O -0.458 6.458 6 N -0.348 5.348 7 C -0.069 4.069 8 C -0.001 4.001 9 C -0.166 4.166 10 C 0.013 3.987 11 N -0.353 5.353 12 C -0.020 4.020 13 C -0.398 4.398 14 H 0.057 0.943 15 C -0.210 4.210 16 N -0.586 5.586 17 Si 0.766 3.234 18 H -0.190 1.190 19 H -0.232 1.232 20 H -0.192 1.192 21 C -0.156 4.156 22 C -0.199 4.199 23 C -0.207 4.207 24 H 0.115 0.885 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.175 0.825 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.138 0.862 43 H 0.120 0.880 44 H 0.101 0.899 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.715 -11.374 -13.074 24.781 hybrid contribution 1.179 0.533 -0.044 1.295 sum -16.536 -10.841 -13.118 23.728 Atomic orbital electron populations 1.21101 0.88182 1.04467 1.04374 1.22198 0.97085 0.92382 0.88279 1.22546 0.91721 1.00332 1.11761 1.19212 0.89384 0.82778 0.76058 1.90706 1.70456 1.31895 1.52699 1.47913 1.07644 1.07398 1.71803 1.22041 0.97653 0.84223 1.03017 1.21337 0.80497 1.02762 0.95518 1.22165 0.98023 1.00430 0.95984 1.21145 0.93761 0.99271 0.84523 1.44213 1.82216 1.02564 1.06264 1.21145 0.98054 0.86230 0.96613 1.18694 1.34134 0.89021 0.97907 0.94254 1.25973 0.99270 0.94600 1.01177 1.70017 1.44463 0.98280 1.45827 0.85953 0.79856 0.77321 0.80267 1.19035 1.23177 1.19244 1.21386 1.00905 0.90235 1.03026 1.23253 0.99275 0.96799 1.00596 1.22808 1.02438 1.03328 0.92114 0.88509 0.89755 0.89643 0.82542 0.90497 0.88907 0.91637 0.90752 0.89835 0.93783 0.93782 0.92345 0.94160 0.96444 0.93947 0.93355 0.92599 0.87796 0.86245 0.88045 0.89933 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.62 71.24 0.69 -0.67 16 2 C 0.00 0.05 5.80 -17.62 -0.10 -0.05 16 3 C -0.24 -5.30 8.74 23.43 0.20 -5.09 16 4 C 0.53 16.14 7.59 86.57 0.66 16.80 16 5 O -0.58 -21.16 12.83 -4.07 -0.05 -21.21 16 6 N -0.62 -17.91 2.87 -851.05 -2.45 -20.35 16 7 C 0.07 1.53 10.11 127.77 1.29 2.82 16 8 C 0.12 4.08 5.41 86.38 0.47 4.55 16 9 C -0.12 -5.04 5.86 30.59 0.18 -4.86 16 10 C 0.14 6.15 4.56 86.38 0.39 6.54 16 11 N -0.63 -31.55 2.50 -726.96 -1.81 -33.36 16 12 C 0.12 5.27 10.70 127.77 1.37 6.64 16 13 C -0.27 -15.77 9.88 84.03 0.83 -14.94 16 14 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 15 C -0.01 -0.77 5.27 84.86 0.45 -0.33 16 16 N -0.94 -58.76 13.97 21.65 0.30 -58.45 16 17 Si 0.94 46.37 25.16 68.60 1.73 48.10 16 18 H -0.26 -12.03 6.63 99.48 0.66 -11.37 16 19 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 20 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 21 C -0.14 -3.18 4.25 -11.54 -0.05 -3.22 16 22 C -0.16 -2.67 9.83 30.62 0.30 -2.37 16 23 C -0.17 -3.77 10.24 30.62 0.31 -3.46 16 24 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 0.77 6.13 -2.39 -0.01 0.75 16 26 H 0.08 0.74 8.07 -2.39 -0.02 0.72 16 27 H 0.16 2.38 6.34 -2.91 -0.02 2.36 16 28 H 0.08 1.26 8.14 -2.38 -0.02 1.25 16 29 H 0.09 1.52 6.18 -2.39 -0.01 1.51 16 30 H 0.06 1.54 8.07 -2.38 -0.02 1.52 16 31 H 0.07 2.54 7.42 -2.39 -0.02 2.52 16 32 H 0.08 2.58 8.07 -2.38 -0.02 2.56 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 36 H 0.04 1.89 3.27 -2.39 -0.01 1.88 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.04 1.78 8.00 -2.39 -0.02 1.76 16 39 H 0.05 1.83 8.11 -2.39 -0.02 1.81 16 40 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.10 3.07 6.34 -2.39 -0.02 3.05 16 42 H 0.12 1.37 6.18 -2.39 -0.01 1.35 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -73.22 357.80 5.61 -67.61 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.91 Total: 15.34 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 6.99 Total: 2.34 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -3.96 Total: -112.17 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.73 Total: 48.10 kcal Total: -73.22 5.61 -67.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673420683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.310 kcal (2) G-P(sol) polarization free energy of solvation -73.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds