Wall clock time and date at job start Tue Mar 31 2020 01:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 C 1.52996 * 109.46903 * 119.99619 * 2 1 3 5 5 H 1.09000 * 109.47521 * 185.00184 * 4 2 1 6 6 C 1.53003 * 109.47332 * 305.00350 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21611 * 120.00241 * 359.97438 * 9 8 7 11 11 C 1.47111 * 119.99940 * 179.97438 * 9 8 7 12 12 C 1.32992 * 119.99985 * 180.02562 * 11 9 8 13 13 C 1.51398 * 136.31626 * 359.62209 * 12 11 9 14 14 C 1.53378 * 87.52274 * 206.06342 * 13 12 11 15 15 C 1.51406 * 136.31531 * 180.02562 * 12 11 9 16 16 N 1.46505 * 109.47130 * 65.00098 * 4 2 1 17 17 C 1.36931 * 119.99788 * 84.99932 * 16 4 2 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 4 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 4 20 20 N 1.31617 * 119.99873 * 180.27450 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.27770 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00079 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99901 * 21 19 17 25 25 H 1.09003 * 109.47634 * 300.00560 * 1 2 3 26 26 H 1.09004 * 109.47209 * 60.00264 * 1 2 3 27 27 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47301 * 239.99518 * 2 1 3 29 29 H 1.08998 * 109.47742 * 59.99451 * 3 2 1 30 30 H 1.09004 * 109.47296 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47144 * 299.99494 * 3 2 1 32 32 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 33 33 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 34 34 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 35 35 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 36 36 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99664 * 0.02562 * 11 9 8 38 38 H 1.09006 * 113.56741 * 320.64576 * 13 12 11 39 39 H 1.09002 * 113.56089 * 91.37953 * 13 12 11 40 40 H 1.08997 * 113.96893 * 220.29633 * 14 13 12 41 41 H 1.08996 * 113.59564 * 88.79185 * 14 13 12 42 42 H 1.09000 * 113.55917 * 268.62255 * 15 12 11 43 43 H 1.08998 * 113.56013 * 39.35721 * 15 12 11 44 44 H 0.97000 * 119.99792 * 264.99726 * 16 4 2 45 45 H 0.97000 * 120.00553 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2953 6 6 1.4298 -0.0761 2.4953 7 6 2.0342 -0.7141 3.7478 8 7 1.4495 -0.0969 4.9409 9 6 1.8340 -0.5034 6.1670 10 8 2.6658 -1.3829 6.2830 11 6 1.2473 0.1168 7.3650 12 6 1.6270 -0.2840 8.5750 13 6 2.5885 -1.3096 9.1369 14 6 1.7084 -1.3488 10.3925 15 6 1.2853 0.0767 10.0052 16 7 1.6523 -2.1328 1.1907 17 6 2.4345 -3.0300 0.5136 18 1 3.3373 -2.6971 0.0232 19 6 2.0702 -4.3685 0.4630 20 7 2.8248 -5.2318 -0.1832 21 14 0.5091 -4.9445 1.3118 22 1 -0.6312 -4.8550 0.3647 23 1 0.6764 -6.3524 1.7535 24 1 0.2410 -4.0839 2.4920 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8898 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6435 0.9927 2.4928 33 1 0.3509 -0.2308 2.4933 34 1 1.8204 -1.7829 3.7503 35 1 3.1131 -0.5594 3.7498 36 1 0.7857 0.6043 4.8484 37 1 0.5082 0.8975 7.2620 38 1 2.5969 -2.2485 8.5832 39 1 3.5886 -0.9159 9.3181 40 1 2.2698 -1.4036 11.3252 41 1 0.9004 -2.0782 10.3363 42 1 1.9277 0.8510 10.4246 43 1 0.2251 0.2745 10.1632 44 1 0.8417 -2.4318 1.6315 45 1 2.5702 -6.1671 -0.2190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676153177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:03 Heat of formation + Delta-G solvation = -0.147207 kcal Electronic energy + Delta-G solvation = -21958.806908 eV Core-core repulsion = 18784.277888 eV Total energy + Delta-G solvation = -3174.529020 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.79071 -38.49666 -37.60894 -34.58776 -33.20676 -31.51472 -30.82254 -29.48998 -26.74879 -25.99280 -25.46016 -23.52000 -22.43306 -21.85908 -20.69570 -18.66168 -18.30383 -17.56168 -16.81266 -16.03538 -15.71951 -15.36846 -14.77706 -14.59801 -14.46184 -13.94718 -13.70489 -13.54833 -13.21147 -12.75259 -12.68537 -12.40871 -12.21424 -12.05340 -11.90843 -11.44699 -11.35305 -11.21995 -11.11633 -10.97219 -10.71180 -10.64167 -10.48290 -10.42145 -10.07422 -9.86496 -9.54665 -9.51999 -9.36407 -8.86644 -8.76843 -7.21361 -5.72636 -3.07543 1.29105 3.30241 3.40665 3.41029 3.43556 3.49027 4.20724 4.28640 4.53724 4.63186 4.86630 5.03711 5.17233 5.18726 5.27307 5.35444 5.38457 5.45222 5.52925 5.57562 5.58817 5.64989 5.78542 5.80937 5.87657 5.98011 5.99038 6.03255 6.08149 6.16798 6.23296 6.31611 6.35992 6.45431 6.52234 6.64788 6.69463 6.72024 6.92214 7.02616 7.69063 8.03835 8.41837 8.46505 9.24996 9.97615 10.16897 11.45956 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.004135 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.542579 B = 6769.907683 C = 8053.229779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.192 3.808 5 H 0.057 0.943 6 C -0.139 4.139 7 C 0.121 3.879 8 N -0.727 5.727 9 C 0.543 3.457 10 O -0.539 6.539 11 C -0.197 4.197 12 C -0.066 4.066 13 C -0.107 4.107 14 C -0.143 4.143 15 C -0.108 4.108 16 N -0.745 5.745 17 C -0.240 4.240 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.934 5.934 21 Si 0.880 3.120 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.277 1.277 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.130 0.870 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 16.087 16.147 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.137 4.137 3 C -0.203 4.203 4 C 0.081 3.919 5 H 0.075 0.925 6 C -0.178 4.178 7 C -0.002 4.002 8 N -0.378 5.378 9 C 0.331 3.669 10 O -0.417 6.417 11 C -0.218 4.218 12 C -0.068 4.068 13 C -0.144 4.144 14 C -0.180 4.180 15 C -0.145 4.145 16 N -0.387 5.387 17 C -0.370 4.370 18 H 0.108 0.892 19 C -0.189 4.189 20 N -0.582 5.582 21 Si 0.711 3.289 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.204 1.204 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.229 0.771 37 H 0.148 0.852 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.095 0.905 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.010 15.301 16.080 22.755 hybrid contribution -1.584 -0.163 0.335 1.628 sum -6.594 15.139 16.416 23.284 Atomic orbital electron populations 1.21761 0.96245 1.01758 0.99861 1.21755 0.95624 0.94782 1.01489 1.21884 1.00729 0.97050 1.00630 1.20126 0.97439 0.84184 0.90108 0.92454 1.22196 1.00919 0.99906 0.94771 1.21437 0.97875 0.98626 0.82249 1.46004 1.44644 1.41049 1.06060 1.18425 0.82232 0.82734 0.83508 1.90804 1.33106 1.30973 1.86862 1.21639 1.05385 1.03740 0.91020 1.23448 0.95228 0.94564 0.93570 1.22220 0.97500 0.99379 0.95252 1.22729 1.00335 0.96585 0.98374 1.22340 1.02179 0.98092 0.91851 1.42805 1.28085 1.03367 1.64459 1.19055 1.04525 0.88185 1.25186 0.89183 1.24634 0.98150 0.95905 1.00250 1.69691 1.38940 1.02671 1.46921 0.86610 0.84538 0.78127 0.79619 1.21218 1.21829 1.20372 0.93622 0.94123 0.92258 0.90597 0.93203 0.93075 0.93641 0.91178 0.91472 0.90411 0.91541 0.77054 0.85196 0.89369 0.88465 0.90444 0.89754 0.88224 0.90518 0.80707 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.59 37.16 0.32 -1.79 16 2 C -0.12 -1.88 2.88 -90.63 -0.26 -2.15 16 3 C -0.15 -1.90 8.95 37.15 0.33 -1.57 16 4 C 0.19 3.46 2.06 -67.93 -0.14 3.32 16 5 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 6 C -0.14 -2.00 4.07 -26.73 -0.11 -2.11 16 7 C 0.12 1.96 5.56 -4.04 -0.02 1.94 16 8 N -0.73 -9.69 5.55 -61.49 -0.34 -10.04 16 9 C 0.54 8.20 7.76 -12.66 -0.10 8.10 16 10 O -0.54 -10.47 15.15 5.27 0.08 -10.39 16 11 C -0.20 -2.22 10.03 -37.80 -0.38 -2.60 16 12 C -0.07 -0.71 6.93 -100.49 -0.70 -1.41 16 13 C -0.11 -1.16 6.99 -27.56 -0.19 -1.35 16 14 C -0.14 -1.14 8.17 -26.20 -0.21 -1.35 16 15 C -0.11 -0.80 7.95 -27.41 -0.22 -1.02 16 16 N -0.74 -16.95 3.83 -53.42 -0.20 -17.16 16 17 C -0.24 -6.66 10.41 -15.06 -0.16 -6.81 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 20 N -0.93 -29.61 13.97 55.49 0.78 -28.84 16 21 Si 0.88 22.51 27.74 -169.99 -4.72 17.80 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 24 H -0.28 -6.75 6.51 56.52 0.37 -6.39 16 25 H 0.04 0.60 6.46 -51.93 -0.34 0.26 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.03 7.75 -51.93 -0.40 0.63 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.05 0.57 6.46 -51.93 -0.34 0.24 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.84 6.34 -51.93 -0.33 0.51 16 33 H 0.07 0.93 6.65 -51.93 -0.35 0.59 16 34 H 0.08 1.55 7.75 -51.93 -0.40 1.15 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.40 3.86 8.46 -40.82 -0.35 3.51 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.09 1.18 7.49 -51.93 -0.39 0.79 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 45 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -33.51 359.77 -8.69 -42.20 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.78 Total: 9.72 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.93 Total: -8.72 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.23 Total: -56.03 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.72 Total: 17.80 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.51 -8.69 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676153177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.056 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds