Wall clock time and date at job start Tue Mar 31 2020 01:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 C 1.52996 * 109.46903 * 119.99619 * 2 1 3 5 5 H 1.09000 * 109.47521 * 185.00184 * 4 2 1 6 6 C 1.53003 * 109.47332 * 305.00350 * 4 2 1 7 7 C 1.53002 * 109.47269 * 185.00423 * 6 4 2 8 8 N 1.46498 * 109.47272 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00043 * 179.97438 * 8 7 6 10 10 O 1.21611 * 120.00241 * 359.97438 * 9 8 7 11 11 C 1.47111 * 119.99940 * 179.97438 * 9 8 7 12 12 C 1.32992 * 119.99985 * 180.02562 * 11 9 8 13 13 C 1.51398 * 136.31626 * 359.62209 * 12 11 9 14 14 C 1.53378 * 87.52274 * 206.06342 * 13 12 11 15 15 C 1.51406 * 136.31531 * 180.02562 * 12 11 9 16 16 N 1.46505 * 109.47130 * 65.00098 * 4 2 1 17 17 C 1.36931 * 119.99788 * 84.99932 * 16 4 2 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 4 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 4 20 20 N 1.31617 * 119.99873 * 180.27450 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.27770 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00079 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99901 * 21 19 17 25 25 H 1.09003 * 109.47634 * 300.00560 * 1 2 3 26 26 H 1.09004 * 109.47209 * 60.00264 * 1 2 3 27 27 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47301 * 239.99518 * 2 1 3 29 29 H 1.08998 * 109.47742 * 59.99451 * 3 2 1 30 30 H 1.09004 * 109.47296 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47144 * 299.99494 * 3 2 1 32 32 H 1.09000 * 109.46805 * 304.99883 * 6 4 2 33 33 H 1.08992 * 109.47408 * 64.99820 * 6 4 2 34 34 H 1.09000 * 109.46766 * 299.99484 * 7 6 4 35 35 H 1.08992 * 109.47398 * 59.99391 * 7 6 4 36 36 H 0.97004 * 119.99849 * 359.97438 * 8 7 6 37 37 H 1.07999 * 119.99664 * 0.02562 * 11 9 8 38 38 H 1.09006 * 113.56741 * 320.64576 * 13 12 11 39 39 H 1.09002 * 113.56089 * 91.37953 * 13 12 11 40 40 H 1.08997 * 113.96893 * 220.29633 * 14 13 12 41 41 H 1.08996 * 113.59564 * 88.79185 * 14 13 12 42 42 H 1.09000 * 113.55917 * 268.62255 * 15 12 11 43 43 H 1.08998 * 113.56013 * 39.35721 * 15 12 11 44 44 H 0.97000 * 119.99792 * 264.99726 * 16 4 2 45 45 H 0.97000 * 120.00553 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1262 -0.6443 1.2953 6 6 1.4298 -0.0761 2.4953 7 6 2.0342 -0.7141 3.7478 8 7 1.4495 -0.0969 4.9409 9 6 1.8340 -0.5034 6.1670 10 8 2.6658 -1.3829 6.2830 11 6 1.2473 0.1168 7.3650 12 6 1.6270 -0.2840 8.5750 13 6 2.5885 -1.3096 9.1369 14 6 1.7084 -1.3488 10.3925 15 6 1.2853 0.0767 10.0052 16 7 1.6523 -2.1328 1.1907 17 6 2.4345 -3.0300 0.5136 18 1 3.3373 -2.6971 0.0232 19 6 2.0702 -4.3685 0.4630 20 7 2.8248 -5.2318 -0.1832 21 14 0.5091 -4.9445 1.3118 22 1 -0.6312 -4.8550 0.3647 23 1 0.6764 -6.3524 1.7535 24 1 0.2410 -4.0839 2.4920 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8898 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6435 0.9927 2.4928 33 1 0.3509 -0.2308 2.4933 34 1 1.8204 -1.7829 3.7503 35 1 3.1131 -0.5594 3.7498 36 1 0.7857 0.6043 4.8484 37 1 0.5082 0.8975 7.2620 38 1 2.5969 -2.2485 8.5832 39 1 3.5886 -0.9159 9.3181 40 1 2.2698 -1.4036 11.3252 41 1 0.9004 -2.0782 10.3363 42 1 1.9277 0.8510 10.4246 43 1 0.2251 0.2745 10.1632 44 1 0.8417 -2.4318 1.6315 45 1 2.5702 -6.1671 -0.2190 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676153177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:02 Heat of formation + Delta-G solvation = -22.740735 kcal Electronic energy + Delta-G solvation = -21959.786637 eV Core-core repulsion = 18784.277888 eV Total energy + Delta-G solvation = -3175.508749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87907 -39.47977 -38.94085 -35.90269 -35.10792 -32.98789 -32.25593 -30.81514 -27.89965 -27.02542 -26.66468 -24.80366 -23.98712 -23.11507 -21.77800 -20.11254 -19.69752 -19.11647 -17.90777 -17.06762 -16.96901 -16.48590 -16.17435 -16.04943 -15.64364 -15.36817 -14.99952 -14.95592 -14.60507 -14.49710 -14.09976 -13.35362 -13.29713 -13.00325 -12.94498 -12.83176 -12.66901 -12.63055 -12.62254 -12.21054 -12.06106 -11.92223 -11.85822 -11.78584 -11.54316 -11.51832 -11.17703 -10.91416 -10.67861 -10.32597 -9.91831 -9.24944 -8.01927 -5.32370 0.38538 1.32600 1.36732 1.42622 2.22269 2.32472 2.46731 3.30122 3.41070 3.58690 3.62202 3.82835 3.93269 4.04423 4.18045 4.24365 4.25701 4.37767 4.48083 4.54156 4.60527 4.73733 4.76260 4.79667 4.84856 4.93019 4.94951 4.97148 5.03086 5.09143 5.17056 5.26014 5.27349 5.31560 5.34927 5.41507 5.48857 5.63352 5.66069 5.67867 5.82800 6.23102 6.65808 7.10277 7.32772 7.87959 8.05258 9.20466 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.004135 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.542579 B = 6769.907683 C = 8053.229779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C -0.138 4.138 4 C 0.182 3.818 5 H 0.036 0.964 6 C -0.122 4.122 7 C 0.129 3.871 8 N -0.710 5.710 9 C 0.532 3.468 10 O -0.596 6.596 11 C -0.206 4.206 12 C -0.073 4.073 13 C -0.125 4.125 14 C -0.135 4.135 15 C -0.089 4.089 16 N -0.746 5.746 17 C -0.217 4.217 18 H 0.055 0.945 19 C -0.065 4.065 20 N -0.987 5.987 21 Si 0.948 3.052 22 H -0.274 1.274 23 H -0.302 1.302 24 H -0.259 1.259 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.047 0.953 36 H 0.418 0.582 37 H 0.171 0.829 38 H 0.050 0.950 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.363 0.637 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 19.711 18.510 28.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C -0.196 4.196 4 C 0.074 3.926 5 H 0.054 0.946 6 C -0.160 4.160 7 C 0.005 3.995 8 N -0.362 5.362 9 C 0.323 3.677 10 O -0.478 6.478 11 C -0.226 4.226 12 C -0.075 4.075 13 C -0.162 4.162 14 C -0.172 4.172 15 C -0.125 4.125 16 N -0.389 5.389 17 C -0.348 4.348 18 H 0.073 0.927 19 C -0.256 4.256 20 N -0.638 5.638 21 Si 0.776 3.224 22 H -0.200 1.200 23 H -0.229 1.229 24 H -0.184 1.184 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.256 0.744 37 H 0.188 0.812 38 H 0.069 0.931 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.139 0.861 43 H 0.116 0.884 44 H 0.196 0.804 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.941 19.032 18.451 27.672 hybrid contribution -0.544 -1.241 -0.412 1.416 sum -8.485 17.792 18.040 26.720 Atomic orbital electron populations 1.21741 0.94670 1.00704 1.02180 1.21604 0.96897 0.96454 0.98254 1.21822 1.00503 0.94509 1.02727 1.20400 0.96793 0.82193 0.93205 0.94560 1.22065 1.01252 1.01384 0.91265 1.21123 0.97238 0.96729 0.84455 1.45772 1.44606 1.41059 1.04730 1.19229 0.81514 0.82046 0.84953 1.90785 1.35770 1.33621 1.87662 1.21722 1.06675 1.04962 0.89226 1.23951 0.94418 0.93866 0.95306 1.22362 0.98697 0.98082 0.97093 1.22725 0.99583 0.97348 0.97558 1.22351 1.03844 0.97855 0.88491 1.42796 1.27509 1.04826 1.63769 1.19014 1.03354 0.89002 1.23473 0.92664 1.25398 1.01915 0.96212 1.02061 1.69873 1.41434 1.02852 1.49671 0.85508 0.80647 0.77041 0.79181 1.20026 1.22885 1.18380 0.90580 0.92557 0.94977 0.94653 0.90420 0.93539 0.92185 0.87194 0.89707 0.94652 0.93485 0.74401 0.81203 0.93132 0.88214 0.88511 0.89965 0.86115 0.88440 0.80395 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.59 71.98 0.62 -3.11 16 2 C -0.11 -3.49 2.88 -10.80 -0.03 -3.52 16 3 C -0.14 -3.18 8.95 71.98 0.64 -2.53 16 4 C 0.18 6.52 2.06 44.99 0.09 6.61 16 5 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 6 C -0.12 -3.17 4.07 30.60 0.12 -3.04 16 7 C 0.13 4.11 5.56 86.38 0.48 4.59 16 8 N -0.71 -17.59 5.55 -466.72 -2.59 -20.18 16 9 C 0.53 15.74 7.76 86.57 0.67 16.41 16 10 O -0.60 -24.11 15.15 -4.07 -0.06 -24.17 16 11 C -0.21 -4.15 10.03 23.43 0.23 -3.91 16 12 C -0.07 -1.43 6.93 -17.17 -0.12 -1.55 16 13 C -0.13 -2.72 6.99 30.06 0.21 -2.51 16 14 C -0.13 -1.85 8.17 30.94 0.25 -1.60 16 15 C -0.09 -0.98 7.95 30.15 0.24 -0.74 16 16 N -0.75 -34.45 3.83 -322.93 -1.24 -35.68 16 17 C -0.22 -12.59 10.41 84.04 0.87 -11.71 16 18 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 19 C -0.06 -3.95 5.50 84.86 0.47 -3.49 16 20 N -0.99 -65.48 13.97 21.65 0.30 -65.18 16 21 Si 0.95 47.72 27.74 68.60 1.90 49.63 16 22 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 24 H -0.26 -12.05 6.51 99.48 0.65 -11.40 16 25 H 0.08 1.62 6.46 -2.39 -0.02 1.61 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.03 1.05 7.75 -2.39 -0.02 1.03 16 28 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.38 6.46 -2.39 -0.02 1.36 16 30 H 0.05 1.11 8.14 -2.38 -0.02 1.10 16 31 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.11 2.07 6.34 -2.39 -0.02 2.06 16 33 H 0.08 1.99 6.65 -2.39 -0.02 1.97 16 34 H 0.03 1.43 7.75 -2.39 -0.02 1.42 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.42 6.51 8.46 -92.71 -0.78 5.72 16 37 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.05 1.46 7.49 -2.38 -0.02 1.44 16 39 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.12 0.90 8.14 -2.39 -0.02 0.89 16 43 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.36 16.36 5.66 -92.71 -0.52 15.83 16 45 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 Total: -1.00 -80.03 359.77 2.68 -77.35 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -0.39 Total: 28.36 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 4.76 Total: -10.12 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -3.53 Total: -121.05 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.90 Total: 49.63 kcal Total: -80.03 2.68 -77.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676153177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.608 kcal (2) G-P(sol) polarization free energy of solvation -80.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds