Wall clock time and date at job start Tue Mar 31 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50708 * 119.99680 * 2 1 4 4 H 1.09004 * 109.46992 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.46916 * 120.00132 * 3 2 1 6 6 C 1.53000 * 109.47153 * 294.45231 * 5 3 2 7 7 C 1.52996 * 109.46920 * 240.00199 * 3 2 1 8 8 C 1.50699 * 109.47626 * 66.13901 * 7 3 2 9 9 O 1.21284 * 119.99352 * 5.77670 * 8 7 3 10 10 N 1.34770 * 120.00198 * 185.78282 * 8 7 3 11 11 C 1.46495 * 119.99889 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47312 * 179.97438 * 11 10 8 13 13 H 1.09006 * 112.84411 * 43.79936 * 12 11 10 14 14 C 1.53777 * 113.61760 * 174.99982 * 12 11 10 15 15 C 1.53780 * 87.08142 * 139.98276 * 14 12 11 16 16 H 1.08997 * 113.61313 * 89.19897 * 15 14 12 17 17 N 1.46497 * 113.61239 * 220.02040 * 15 14 12 18 18 C 1.36936 * 119.99759 * 203.19655 * 17 15 14 19 19 H 1.07997 * 120.00087 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00204 * 179.97438 * 18 17 15 21 21 N 1.31628 * 119.99722 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00213 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47075 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46979 * 120.00292 * 22 20 18 25 25 H 1.48500 * 109.47023 * 240.00148 * 22 20 18 26 26 C 1.53781 * 87.17086 * 334.60941 * 15 14 12 27 27 H 1.07997 * 120.00519 * 0.02562 * 1 2 3 28 28 H 1.08009 * 119.99934 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00259 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46781 * 54.44736 * 5 3 2 31 31 H 1.08992 * 109.46956 * 174.44886 * 5 3 2 32 32 H 1.09001 * 109.47650 * 65.45641 * 6 5 3 33 33 H 1.08996 * 109.47046 * 185.46214 * 6 5 3 34 34 H 1.09006 * 109.47270 * 305.46195 * 6 5 3 35 35 H 1.09001 * 109.47256 * 306.13178 * 7 3 2 36 36 H 1.09012 * 109.46709 * 186.14047 * 7 3 2 37 37 H 0.97002 * 120.00054 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.47068 * 59.99917 * 11 10 8 39 39 H 1.08995 * 109.47644 * 299.99438 * 11 10 8 40 40 H 1.08999 * 113.61200 * 25.43250 * 14 12 11 41 41 H 1.08998 * 113.61287 * 254.53494 * 14 12 11 42 42 H 0.96995 * 120.00379 * 23.46737 * 17 15 14 43 43 H 0.96992 * 119.99673 * 179.97438 * 21 20 18 44 44 H 1.09004 * 113.61377 * 139.94107 * 26 15 14 45 45 H 1.09004 * 113.61386 * 270.84060 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 0.0005 5 6 2.9430 1.3862 1.2493 6 6 2.0561 1.4445 2.4946 7 6 2.9429 1.3863 -1.2492 8 6 2.0693 1.4583 -2.4750 9 8 0.8658 1.5518 -2.3572 10 7 2.6252 1.4188 -3.7021 11 6 1.7758 1.4883 -4.8936 12 6 2.6501 1.4248 -6.1477 13 1 3.4308 0.6669 -6.0814 14 6 1.8459 1.3680 -7.4572 15 6 2.8948 2.3230 -8.0508 16 1 3.7425 1.8116 -8.5068 17 7 2.3231 3.3585 -8.9152 18 6 3.1010 3.9625 -9.8666 19 1 4.1359 3.6752 -9.9800 20 6 2.5592 4.9433 -10.6860 21 7 1.2978 5.2931 -10.5481 22 14 3.6206 5.7677 -11.9834 23 1 4.9920 5.2002 -11.9347 24 1 3.0343 5.5298 -13.3269 25 1 3.6790 7.2280 -11.7203 26 6 3.1633 2.7994 -6.6136 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5836 0.5058 1.3003 31 1 3.5609 2.2828 1.2010 32 1 1.5096 0.5068 2.5957 33 1 2.6777 1.5997 3.3764 34 1 1.3490 2.2685 2.3989 35 1 3.5762 0.5009 -1.3059 36 1 3.5685 2.2775 -1.1959 37 1 3.5878 1.3444 -3.7963 38 1 1.2173 2.4243 -4.8876 39 1 1.0796 0.6497 -4.8930 40 1 0.8512 1.8065 -7.3780 41 1 1.8392 0.3826 -7.9230 42 1 1.3946 3.6191 -8.8109 43 1 0.9193 5.9787 -11.1203 44 1 4.2187 2.9681 -6.3994 45 1 2.5294 3.6302 -6.3034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688909373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:33 Heat of formation + Delta-G solvation = -10.282972 kcal Electronic energy + Delta-G solvation = -21319.343786 eV Core-core repulsion = 18144.375247 eV Total energy + Delta-G solvation = -3174.968540 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.95734 -38.55841 -36.90607 -34.58327 -33.27417 -31.96411 -30.89634 -30.07511 -27.36045 -25.09845 -24.76496 -23.67011 -21.88670 -21.02786 -20.54669 -19.70188 -19.01168 -17.13422 -16.88330 -16.10379 -15.79973 -15.10031 -14.94244 -14.70243 -14.59618 -14.06580 -13.75517 -13.67218 -13.40531 -13.07366 -12.87503 -12.38532 -12.13695 -11.88421 -11.79083 -11.56074 -11.44172 -11.35314 -11.23020 -11.05469 -10.85485 -10.70537 -10.52050 -10.23431 -10.11285 -9.82674 -9.80216 -9.51441 -9.26536 -8.94551 -8.86880 -6.96476 -5.78783 -3.07617 2.29535 2.70279 3.21706 3.41901 3.47332 3.49813 4.50051 4.53984 4.57857 4.64062 4.94863 4.98286 5.00865 5.06200 5.13970 5.21568 5.23345 5.28593 5.46601 5.47227 5.52312 5.60725 5.65588 5.70234 5.83822 5.84419 5.87231 5.95994 5.96735 6.07047 6.09329 6.27852 6.32334 6.36815 6.50018 6.59164 6.60644 6.79590 6.83435 7.11872 7.54192 7.69009 8.27939 8.39850 9.50845 10.09390 10.43523 11.43699 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.002441 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.152970 B =11465.647148 C =11644.213359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.154 4.154 3 C -0.045 4.045 4 H 0.083 0.917 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.135 4.135 8 C 0.507 3.493 9 O -0.536 6.536 10 N -0.729 5.729 11 C 0.133 3.867 12 C -0.127 4.127 13 H 0.087 0.913 14 C -0.142 4.142 15 C 0.165 3.835 16 H 0.074 0.926 17 N -0.714 5.714 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.015 4.015 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.160 4.160 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.399 0.601 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.053 0.947 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.447 -11.321 23.052 26.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C -0.064 4.064 4 H 0.101 0.899 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.175 4.175 8 C 0.293 3.707 9 O -0.413 6.413 10 N -0.380 5.380 11 C 0.010 3.990 12 C -0.146 4.146 13 H 0.105 0.895 14 C -0.181 4.181 15 C 0.053 3.947 16 H 0.092 0.908 17 N -0.352 5.352 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.211 4.211 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.201 4.201 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.232 0.768 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.686 -11.171 22.958 25.796 hybrid contribution 0.725 0.517 -0.823 1.213 sum 4.411 -10.654 22.134 24.958 Atomic orbital electron populations 1.23744 0.95982 1.01424 0.99080 1.22659 0.95995 0.97106 1.01482 1.20175 0.96645 0.97126 0.92474 0.89856 1.21545 0.97854 1.01932 0.94041 1.21755 0.99805 1.02126 0.97123 1.21723 0.98705 1.04212 0.92885 1.20648 0.89165 0.76201 0.84644 1.90704 1.15076 1.48789 1.86705 1.46098 1.10840 1.75184 1.05906 1.21390 0.92945 1.01924 0.82775 1.22666 0.98874 0.99809 0.93270 0.89478 1.23418 0.99715 1.00452 0.94557 1.21522 0.94651 0.89698 0.88796 0.90786 1.42423 1.12109 1.41944 1.38675 1.19344 0.93923 1.14771 1.09365 0.91055 1.24784 0.96239 0.99912 1.00117 1.69675 1.12178 1.34279 1.41871 0.86114 0.79354 0.79178 0.81519 1.20543 1.21855 1.21854 1.23970 1.00051 0.95019 1.01103 0.88495 0.89220 0.88135 0.91883 0.91787 0.92521 0.92947 0.92716 0.89156 0.88709 0.76778 0.91399 0.91972 0.90122 0.92026 0.78072 0.93499 0.92819 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 13.42 29.02 0.39 -1.31 16 2 C -0.15 -1.45 7.00 -36.02 -0.25 -1.71 16 3 C -0.05 -0.39 1.80 -91.77 -0.17 -0.56 16 4 H 0.08 0.88 7.47 -51.93 -0.39 0.49 16 5 C -0.12 -0.78 5.39 -26.73 -0.14 -0.92 16 6 C -0.15 -1.01 9.64 37.16 0.36 -0.65 16 7 C -0.14 -1.10 5.15 -27.89 -0.14 -1.24 16 8 C 0.51 6.07 7.52 -10.99 -0.08 5.99 16 9 O -0.54 -8.45 14.47 5.55 0.08 -8.37 16 10 N -0.73 -8.05 5.56 -60.30 -0.33 -8.39 16 11 C 0.13 1.76 5.51 -4.04 -0.02 1.74 16 12 C -0.13 -1.69 3.75 -89.72 -0.34 -2.03 16 13 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 14 C -0.14 -2.26 7.39 -25.92 -0.19 -2.46 16 15 C 0.17 3.20 4.47 -67.12 -0.30 2.90 16 16 H 0.07 1.42 8.11 -51.93 -0.42 0.99 16 17 N -0.71 -17.86 5.41 -52.64 -0.28 -18.14 16 18 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 22 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 C -0.16 -2.65 7.44 -25.83 -0.19 -2.84 16 27 H 0.10 1.09 7.83 -52.49 -0.41 0.68 16 28 H 0.09 0.83 8.06 -52.48 -0.42 0.40 16 29 H 0.10 0.84 8.06 -52.48 -0.42 0.42 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 7.58 -51.93 -0.39 0.00 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.40 3.37 8.47 -40.82 -0.35 3.02 16 38 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.39 10.29 7.91 -40.82 -0.32 9.97 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.44 7.90 -51.93 -0.41 1.02 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -31.96 368.20 -8.76 -40.72 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.14 Total: 9.35 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.33 Total: -10.49 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.10 Total: -54.08 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.96 -8.76 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688909373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.433 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds