Wall clock time and date at job start Tue Mar 31 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50708 * 119.99680 * 2 1 4 4 H 1.09004 * 109.46992 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.46916 * 120.00132 * 3 2 1 6 6 C 1.53000 * 109.47153 * 294.45231 * 5 3 2 7 7 C 1.52996 * 109.46920 * 240.00199 * 3 2 1 8 8 C 1.50699 * 109.47626 * 66.13901 * 7 3 2 9 9 O 1.21284 * 119.99352 * 5.77670 * 8 7 3 10 10 N 1.34770 * 120.00198 * 185.78282 * 8 7 3 11 11 C 1.46495 * 119.99889 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47312 * 179.97438 * 11 10 8 13 13 H 1.09006 * 112.84411 * 43.79936 * 12 11 10 14 14 C 1.53777 * 113.61760 * 174.99982 * 12 11 10 15 15 C 1.53780 * 87.08142 * 139.98276 * 14 12 11 16 16 H 1.08997 * 113.61313 * 89.19897 * 15 14 12 17 17 N 1.46497 * 113.61239 * 220.02040 * 15 14 12 18 18 C 1.36936 * 119.99759 * 203.19655 * 17 15 14 19 19 H 1.07997 * 120.00087 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00204 * 179.97438 * 18 17 15 21 21 N 1.31628 * 119.99722 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00213 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47075 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46979 * 120.00292 * 22 20 18 25 25 H 1.48500 * 109.47023 * 240.00148 * 22 20 18 26 26 C 1.53781 * 87.17086 * 334.60941 * 15 14 12 27 27 H 1.07997 * 120.00519 * 0.02562 * 1 2 3 28 28 H 1.08009 * 119.99934 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.00259 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46781 * 54.44736 * 5 3 2 31 31 H 1.08992 * 109.46956 * 174.44886 * 5 3 2 32 32 H 1.09001 * 109.47650 * 65.45641 * 6 5 3 33 33 H 1.08996 * 109.47046 * 185.46214 * 6 5 3 34 34 H 1.09006 * 109.47270 * 305.46195 * 6 5 3 35 35 H 1.09001 * 109.47256 * 306.13178 * 7 3 2 36 36 H 1.09012 * 109.46709 * 186.14047 * 7 3 2 37 37 H 0.97002 * 120.00054 * 359.97438 * 10 8 7 38 38 H 1.09004 * 109.47068 * 59.99917 * 11 10 8 39 39 H 1.08995 * 109.47644 * 299.99438 * 11 10 8 40 40 H 1.08999 * 113.61200 * 25.43250 * 14 12 11 41 41 H 1.08998 * 113.61287 * 254.53494 * 14 12 11 42 42 H 0.96995 * 120.00379 * 23.46737 * 17 15 14 43 43 H 0.96992 * 119.99673 * 179.97438 * 21 20 18 44 44 H 1.09004 * 113.61377 * 139.94107 * 26 15 14 45 45 H 1.09004 * 113.61386 * 270.84060 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3550 2.1337 0.0005 5 6 2.9430 1.3862 1.2493 6 6 2.0561 1.4445 2.4946 7 6 2.9429 1.3863 -1.2492 8 6 2.0693 1.4583 -2.4750 9 8 0.8658 1.5518 -2.3572 10 7 2.6252 1.4188 -3.7021 11 6 1.7758 1.4883 -4.8936 12 6 2.6501 1.4248 -6.1477 13 1 3.4308 0.6669 -6.0814 14 6 1.8459 1.3680 -7.4572 15 6 2.8948 2.3230 -8.0508 16 1 3.7425 1.8116 -8.5068 17 7 2.3231 3.3585 -8.9152 18 6 3.1010 3.9625 -9.8666 19 1 4.1359 3.6752 -9.9800 20 6 2.5592 4.9433 -10.6860 21 7 1.2978 5.2931 -10.5481 22 14 3.6206 5.7677 -11.9834 23 1 4.9920 5.2002 -11.9347 24 1 3.0343 5.5298 -13.3269 25 1 3.6790 7.2280 -11.7203 26 6 3.1633 2.7994 -6.6136 27 1 -0.5401 0.9352 -0.0004 28 1 -0.5400 -0.9354 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 3.5836 0.5058 1.3003 31 1 3.5609 2.2828 1.2010 32 1 1.5096 0.5068 2.5957 33 1 2.6777 1.5997 3.3764 34 1 1.3490 2.2685 2.3989 35 1 3.5762 0.5009 -1.3059 36 1 3.5685 2.2775 -1.1959 37 1 3.5878 1.3444 -3.7963 38 1 1.2173 2.4243 -4.8876 39 1 1.0796 0.6497 -4.8930 40 1 0.8512 1.8065 -7.3780 41 1 1.8392 0.3826 -7.9230 42 1 1.3946 3.6191 -8.8109 43 1 0.9193 5.9787 -11.1203 44 1 4.2187 2.9681 -6.3994 45 1 2.5294 3.6302 -6.3034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688909373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:33 Heat of formation + Delta-G solvation = -30.468874 kcal Electronic energy + Delta-G solvation = -21320.219113 eV Core-core repulsion = 18144.375247 eV Total energy + Delta-G solvation = -3175.843866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94087 -39.85387 -37.65957 -35.95581 -34.94419 -32.62249 -32.28706 -31.33693 -28.57277 -26.46311 -26.04722 -25.09312 -22.55285 -22.36890 -21.52429 -20.53092 -20.30480 -19.04975 -17.89403 -17.19277 -16.65502 -16.58674 -16.14772 -15.67561 -15.65353 -15.28521 -15.06934 -14.67450 -14.55824 -14.35432 -13.84872 -13.42082 -13.24189 -13.06395 -12.98847 -12.91981 -12.80577 -12.62063 -12.19549 -12.13840 -12.05815 -12.01723 -11.67160 -11.57892 -11.54877 -11.33626 -11.07656 -10.85547 -10.72460 -10.09240 -9.92597 -8.97960 -7.94877 -5.23334 1.47145 1.47987 1.53765 1.58090 1.79350 2.31564 2.56609 3.37177 3.69432 3.76904 3.83459 3.86307 3.95241 3.97947 4.26079 4.34500 4.39001 4.41982 4.45136 4.48164 4.57175 4.61455 4.69333 4.79934 4.87696 4.97597 4.99004 5.03343 5.06346 5.08699 5.10066 5.20743 5.23136 5.38556 5.41366 5.47637 5.49451 5.56352 5.74894 5.83435 6.06763 6.27643 6.69174 7.32769 7.40162 8.11263 8.32855 9.28961 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.002441 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.152970 B =11465.647148 C =11644.213359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.147 4.147 3 C -0.047 4.047 4 H 0.056 0.944 5 C -0.110 4.110 6 C -0.153 4.153 7 C -0.127 4.127 8 C 0.500 3.500 9 O -0.581 6.581 10 N -0.719 5.719 11 C 0.140 3.860 12 C -0.094 4.094 13 H 0.123 0.877 14 C -0.138 4.138 15 C 0.143 3.857 16 H 0.081 0.919 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.080 0.920 20 C -0.083 4.083 21 N -0.973 5.973 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.296 1.296 26 C -0.152 4.152 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.415 0.585 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.069 0.931 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 -12.897 24.139 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.165 4.165 3 C -0.066 4.066 4 H 0.074 0.926 5 C -0.147 4.147 6 C -0.210 4.210 7 C -0.166 4.166 8 C 0.288 3.712 9 O -0.461 6.461 10 N -0.371 5.371 11 C 0.016 3.984 12 C -0.113 4.113 13 H 0.141 0.859 14 C -0.177 4.177 15 C 0.033 3.967 16 H 0.099 0.901 17 N -0.369 5.369 18 C -0.371 4.371 19 H 0.098 0.902 20 C -0.274 4.274 21 N -0.624 5.624 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.223 1.223 26 C -0.193 4.193 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.136 0.864 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.252 0.748 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.817 -12.793 24.080 28.107 hybrid contribution -0.222 0.952 -1.101 1.472 sum 6.595 -11.841 22.980 26.679 Atomic orbital electron populations 1.23737 0.96721 1.00894 1.01117 1.22912 0.95742 0.98187 0.99627 1.20182 0.96648 0.95717 0.94043 0.92586 1.21518 0.97516 1.03226 0.92485 1.21769 0.99870 1.01421 0.97929 1.21765 0.98143 1.06647 0.90085 1.21414 0.89062 0.74979 0.85724 1.90702 1.17303 1.50741 1.87329 1.45975 1.11500 1.74633 1.05022 1.21118 0.93090 1.00434 0.83782 1.22493 0.98554 0.98404 0.91813 0.85942 1.23312 0.98332 1.00166 0.95907 1.21970 0.95960 0.89532 0.89201 0.90085 1.42658 1.11460 1.43333 1.39418 1.19775 0.94397 1.13961 1.09011 0.90182 1.25630 0.97533 1.01398 1.02874 1.69840 1.14043 1.35304 1.43237 0.85055 0.78463 0.77675 0.78478 1.18657 1.22231 1.22292 1.23736 1.00663 0.96033 0.98856 0.90462 0.88544 0.86373 0.90264 0.90676 0.93072 0.91738 0.93816 0.86129 0.86516 0.74791 0.94170 0.92251 0.91757 0.90299 0.79740 0.94143 0.91206 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.95 13.42 67.79 0.91 -3.04 16 2 C -0.15 -2.58 7.00 25.66 0.18 -2.40 16 3 C -0.05 -0.74 1.80 -11.54 -0.02 -0.76 16 4 H 0.06 1.20 7.47 -2.38 -0.02 1.18 16 5 C -0.11 -1.18 5.39 30.60 0.16 -1.01 16 6 C -0.15 -1.85 9.64 71.98 0.69 -1.15 16 7 C -0.13 -1.67 5.15 29.85 0.15 -1.52 16 8 C 0.50 11.12 7.52 87.66 0.66 11.78 16 9 O -0.58 -18.41 14.47 -3.04 -0.04 -18.45 16 10 N -0.72 -14.06 5.56 -463.07 -2.57 -16.63 16 11 C 0.14 3.52 5.51 86.38 0.48 3.99 16 12 C -0.09 -2.25 3.75 -10.21 -0.04 -2.29 16 13 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 14 C -0.14 -4.23 7.39 31.12 0.23 -4.00 16 15 C 0.14 5.36 4.47 45.52 0.20 5.57 16 16 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 17 N -0.73 -37.01 5.41 -320.46 -1.73 -38.74 16 18 C -0.24 -13.27 9.97 84.03 0.84 -12.43 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 21 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 22 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 C -0.15 -4.79 7.44 31.18 0.23 -4.56 16 27 H 0.08 1.89 7.83 -2.91 -0.02 1.87 16 28 H 0.10 1.81 8.06 -2.91 -0.02 1.78 16 29 H 0.12 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.67 7.58 -2.39 -0.02 0.65 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.42 5.33 8.47 -92.71 -0.79 4.55 16 38 H 0.04 1.25 7.85 -2.39 -0.02 1.23 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 2.20 8.07 -2.39 -0.02 2.18 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.37 20.51 7.91 -92.71 -0.73 19.78 16 43 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.05 1.95 7.90 -2.38 -0.02 1.93 16 Total: -1.00 -71.68 368.20 2.54 -69.14 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: -0.57 Total: 32.85 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 5.15 Total: -16.13 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -4.02 Total: -115.70 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.04 Total: -18.45 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -71.68 2.54 -69.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688909373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.667 kcal (2) G-P(sol) polarization free energy of solvation -71.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds