Wall clock time and date at job start Tue Mar 31 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47108 * 2 1 4 4 H 1.09003 * 109.87599 * 54.33027 * 3 2 1 5 5 C 1.54323 * 109.88179 * 293.30755 * 3 2 1 6 6 H 1.09000 * 110.87742 * 336.67608 * 5 3 2 7 7 N 1.46506 * 110.71883 * 99.87322 * 5 3 2 8 8 C 1.34768 * 120.00039 * 199.97655 * 7 5 3 9 9 O 1.21279 * 120.00507 * 354.88392 * 8 7 5 10 10 C 1.50710 * 119.99960 * 174.88634 * 8 7 5 11 11 C 1.53001 * 115.54665 * 279.52668 * 10 8 7 12 12 C 1.53005 * 109.47176 * 301.32338 * 11 10 8 13 13 C 1.52996 * 117.50092 * 133.81988 * 10 8 7 14 14 C 1.52992 * 117.49955 * 65.19714 * 10 8 7 15 15 C 1.55155 * 102.94525 * 218.23275 * 5 3 2 16 16 C 1.54912 * 101.57928 * 35.50757 * 15 5 3 17 17 N 1.47297 * 110.00349 * 175.39072 * 3 2 1 18 18 C 1.36940 * 125.78943 * 298.42642 * 17 3 2 19 19 H 1.08006 * 119.99737 * 347.26685 * 18 17 3 20 20 C 1.38806 * 119.99773 * 167.26065 * 18 17 3 21 21 N 1.31611 * 120.00243 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47281 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46814 * 120.00595 * 22 20 18 25 25 H 1.48494 * 109.47386 * 240.00280 * 22 20 18 26 26 H 1.09000 * 109.46952 * 305.80438 * 1 2 3 27 27 H 1.09000 * 109.46955 * 65.80874 * 1 2 3 28 28 H 1.09002 * 109.47287 * 185.80349 * 1 2 3 29 29 H 1.08997 * 109.46963 * 239.99789 * 2 1 3 30 30 H 1.09002 * 109.47219 * 120.00016 * 2 1 3 31 31 H 0.97003 * 119.99836 * 19.97850 * 7 5 3 32 32 H 1.09004 * 109.46957 * 61.32350 * 11 10 8 33 33 H 1.09002 * 109.47246 * 181.32015 * 11 10 8 34 34 H 1.08998 * 109.46548 * 296.17854 * 12 11 10 35 35 H 1.08994 * 109.47099 * 56.18539 * 12 11 10 36 36 H 1.09007 * 109.46586 * 176.18650 * 12 11 10 37 37 H 1.09005 * 117.49651 * 0.02562 * 13 10 8 38 38 H 1.08998 * 117.50062 * 145.01783 * 13 10 8 39 39 H 1.09004 * 117.50046 * 214.97844 * 14 10 8 40 40 H 1.09001 * 117.50363 * 0.02562 * 14 10 8 41 41 H 1.08993 * 111.00767 * 277.42894 * 15 5 3 42 42 H 1.09001 * 111.03441 * 153.58856 * 15 5 3 43 43 H 1.08994 * 110.37111 * 81.82185 * 16 15 5 44 44 H 1.09000 * 110.36956 * 204.04280 * 16 15 5 45 45 H 0.97006 * 120.00751 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5999 1.9911 0.8328 5 6 1.6735 2.1286 -1.3328 6 1 1.5186 1.3907 -2.1199 7 7 0.4850 2.9702 -1.1729 8 6 -0.2357 3.3307 -2.2531 9 8 0.1498 3.0372 -3.3649 10 6 -1.5209 4.0985 -2.0796 11 6 -2.7453 3.2600 -1.7072 12 6 -2.9871 2.2030 -2.7867 13 6 -1.7444 5.3147 -2.9805 14 6 -1.4273 5.5099 -1.4966 15 6 2.9243 2.9965 -1.6323 16 6 4.0641 2.0946 -1.0967 17 7 3.5086 1.4576 0.1112 18 6 4.2375 0.9635 1.1600 19 1 3.7446 0.7035 2.0852 20 6 5.6097 0.7966 1.0338 21 7 6.2104 1.1137 -0.0935 22 14 6.6041 0.1232 2.4647 23 1 5.6996 -0.1529 3.6096 24 1 7.2768 -1.1346 2.0514 25 1 7.6263 1.1210 2.8702 26 1 -0.3633 0.6012 0.8335 27 1 -0.3633 0.4211 -0.9374 28 1 -0.3634 -1.0224 0.1039 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.2168 3.2679 -0.2895 32 1 -2.5716 2.7686 -0.7499 33 1 -3.6191 3.9072 -1.6301 34 1 -3.2277 2.6948 -3.7292 35 1 -2.0887 1.5986 -2.9111 36 1 -3.8174 1.5627 -2.4886 37 1 -0.9621 5.5592 -3.6991 38 1 -2.7639 5.5177 -3.3083 39 1 -2.2383 5.8414 -0.8480 40 1 -0.4362 5.8834 -1.2389 41 1 2.8844 3.9402 -1.0884 42 1 3.0333 3.1694 -2.7030 43 1 4.3293 1.3389 -1.8361 44 1 4.9361 2.6966 -0.8411 45 1 7.1694 0.9974 -0.1816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691499375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:41 Heat of formation + Delta-G solvation = -3.921815 kcal Electronic energy + Delta-G solvation = -23265.821836 eV Core-core repulsion = 20091.129137 eV Total energy + Delta-G solvation = -3174.692699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17331 -38.14976 -36.62132 -33.94805 -32.73497 -32.08261 -31.64378 -28.99897 -26.72090 -24.99902 -24.10179 -22.91732 -22.51454 -21.70112 -20.26187 -19.98194 -18.81626 -16.83669 -16.67139 -15.95827 -15.51110 -14.87896 -14.62947 -14.11329 -14.04586 -13.83017 -13.59904 -13.36489 -13.01624 -12.68575 -12.50465 -11.99781 -11.93998 -11.78653 -11.67640 -11.62335 -11.34225 -11.12717 -10.89680 -10.84276 -10.60624 -10.53889 -10.43050 -10.28501 -10.10649 -10.03582 -9.74401 -9.64496 -9.42062 -8.63807 -8.53715 -6.82176 -5.74492 -3.10957 2.80829 3.27663 3.38344 3.44157 3.46402 3.58532 4.42478 4.47497 4.64929 4.73533 4.89133 5.20521 5.27011 5.31059 5.35857 5.43653 5.47403 5.53328 5.55565 5.69541 5.74365 5.77073 5.81183 5.85417 5.87382 5.94993 5.97105 6.05445 6.18543 6.24542 6.34858 6.41807 6.46900 6.59224 6.70604 6.75420 6.94952 7.15767 7.53198 7.60604 7.79374 7.81201 8.26212 8.48479 9.18042 9.78995 10.46764 11.36782 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028330 B = 0.004388 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.107033 B = 6379.456992 C = 6800.847262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.035 0.965 5 C 0.139 3.861 6 H 0.089 0.911 7 N -0.709 5.709 8 C 0.550 3.450 9 O -0.538 6.538 10 C -0.155 4.155 11 C -0.076 4.076 12 C -0.151 4.151 13 C -0.146 4.146 14 C -0.166 4.166 15 C -0.155 4.155 16 C 0.172 3.828 17 N -0.594 5.594 18 C -0.226 4.226 19 H 0.076 0.924 20 C -0.004 4.004 21 N -0.917 5.917 22 Si 0.910 3.090 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.077 0.923 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.479 6.093 -1.988 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.053 0.947 5 C 0.035 3.965 6 H 0.107 0.893 7 N -0.359 5.359 8 C 0.335 3.665 9 O -0.414 6.414 10 C -0.158 4.158 11 C -0.114 4.114 12 C -0.208 4.208 13 C -0.184 4.184 14 C -0.203 4.203 15 C -0.195 4.195 16 C 0.047 3.953 17 N -0.319 5.319 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.201 4.201 21 N -0.564 5.564 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.232 0.768 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.096 0.904 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.946 5.801 -2.735 18.119 hybrid contribution 0.502 -0.307 1.134 1.277 sum -16.444 5.494 -1.601 17.411 Atomic orbital electron populations 1.21766 0.97229 1.00485 1.00909 1.22010 0.93621 0.99175 1.02375 1.21110 0.87181 0.93355 0.93045 0.94729 1.22088 0.83518 0.92337 0.98560 0.89278 1.46057 1.28206 1.52257 1.09405 1.19388 0.83482 0.79064 0.84581 1.90691 1.70709 1.55201 1.24834 1.21539 0.95747 0.90389 1.08134 1.20979 0.94103 0.96999 0.99295 1.21727 1.01839 0.98557 0.98692 1.22955 1.03235 0.98669 0.93505 1.23118 1.03703 0.96594 0.96930 1.23409 0.96730 0.98996 1.00374 1.21469 0.93203 0.93138 0.87491 1.44520 0.98446 1.68985 1.19951 1.18997 0.89431 1.35964 0.91050 0.90613 1.24875 0.96947 1.01140 0.97149 1.69937 1.09128 1.52969 1.24332 0.86081 0.80131 0.78414 0.81343 1.20464 1.21707 1.21766 0.93420 0.93343 0.93691 0.92445 0.91680 0.76838 0.91104 0.91135 0.92486 0.92290 0.92624 0.88187 0.88132 0.87994 0.88261 0.92167 0.91915 0.95650 0.90441 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.62 37.16 0.36 -1.76 16 2 C -0.13 -2.43 5.44 -26.74 -0.15 -2.58 16 3 C 0.16 3.18 2.92 -66.81 -0.20 2.98 16 4 H 0.04 0.67 7.69 -51.93 -0.40 0.27 16 5 C 0.14 2.53 1.95 -66.09 -0.13 2.40 16 6 H 0.09 1.76 7.42 -51.93 -0.39 1.38 16 7 N -0.71 -10.39 4.96 -52.03 -0.26 -10.65 16 8 C 0.55 8.21 6.01 -10.98 -0.07 8.14 16 9 O -0.54 -10.17 16.76 5.56 0.09 -10.08 16 10 C -0.15 -1.71 1.95 -155.66 -0.30 -2.02 16 11 C -0.08 -0.71 5.84 -26.73 -0.16 -0.86 16 12 C -0.15 -1.55 9.78 37.16 0.36 -1.19 16 13 C -0.15 -1.46 9.86 -26.74 -0.26 -1.73 16 14 C -0.17 -1.51 9.95 -26.74 -0.27 -1.77 16 15 C -0.16 -3.10 6.77 -24.58 -0.17 -3.27 16 16 C 0.17 4.19 5.44 -2.53 -0.01 4.18 16 17 N -0.59 -14.66 3.14 -162.37 -0.51 -15.17 16 18 C -0.23 -6.10 9.76 -15.06 -0.15 -6.25 16 19 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 20 C 0.00 -0.12 5.47 -17.44 -0.10 -0.21 16 21 N -0.92 -26.62 10.50 55.49 0.58 -26.04 16 22 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.70 7.47 -51.93 -0.39 0.31 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.13 8.04 -51.93 -0.42 0.72 16 30 H 0.06 1.29 7.88 -51.93 -0.41 0.88 16 31 H 0.40 4.99 8.32 -40.82 -0.34 4.66 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.75 7.37 -51.93 -0.38 0.37 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.08 2.09 6.78 -51.93 -0.35 1.74 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 359.87 15.07 5.42 5.42 Total: -1.00 -30.63 359.87 -9.03 -39.66 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.11 Total: 4.04 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.23 Total: -3.94 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: -0.19 Total: -51.85 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.63 -9.03 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691499375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.735 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds