Wall clock time and date at job start Tue Mar 31 2020 02:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47108 * 2 1 4 4 H 1.09003 * 109.87599 * 54.33027 * 3 2 1 5 5 C 1.54323 * 109.88179 * 293.30755 * 3 2 1 6 6 H 1.09000 * 110.87742 * 336.67608 * 5 3 2 7 7 N 1.46506 * 110.71883 * 99.87322 * 5 3 2 8 8 C 1.34768 * 120.00039 * 199.97655 * 7 5 3 9 9 O 1.21279 * 120.00507 * 354.88392 * 8 7 5 10 10 C 1.50710 * 119.99960 * 174.88634 * 8 7 5 11 11 C 1.53001 * 115.54665 * 279.52668 * 10 8 7 12 12 C 1.53005 * 109.47176 * 301.32338 * 11 10 8 13 13 C 1.52996 * 117.50092 * 133.81988 * 10 8 7 14 14 C 1.52992 * 117.49955 * 65.19714 * 10 8 7 15 15 C 1.55155 * 102.94525 * 218.23275 * 5 3 2 16 16 C 1.54912 * 101.57928 * 35.50757 * 15 5 3 17 17 N 1.47297 * 110.00349 * 175.39072 * 3 2 1 18 18 C 1.36940 * 125.78943 * 298.42642 * 17 3 2 19 19 H 1.08006 * 119.99737 * 347.26685 * 18 17 3 20 20 C 1.38806 * 119.99773 * 167.26065 * 18 17 3 21 21 N 1.31611 * 120.00243 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47281 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46814 * 120.00595 * 22 20 18 25 25 H 1.48494 * 109.47386 * 240.00280 * 22 20 18 26 26 H 1.09000 * 109.46952 * 305.80438 * 1 2 3 27 27 H 1.09000 * 109.46955 * 65.80874 * 1 2 3 28 28 H 1.09002 * 109.47287 * 185.80349 * 1 2 3 29 29 H 1.08997 * 109.46963 * 239.99789 * 2 1 3 30 30 H 1.09002 * 109.47219 * 120.00016 * 2 1 3 31 31 H 0.97003 * 119.99836 * 19.97850 * 7 5 3 32 32 H 1.09004 * 109.46957 * 61.32350 * 11 10 8 33 33 H 1.09002 * 109.47246 * 181.32015 * 11 10 8 34 34 H 1.08998 * 109.46548 * 296.17854 * 12 11 10 35 35 H 1.08994 * 109.47099 * 56.18539 * 12 11 10 36 36 H 1.09007 * 109.46586 * 176.18650 * 12 11 10 37 37 H 1.09005 * 117.49651 * 0.02562 * 13 10 8 38 38 H 1.08998 * 117.50062 * 145.01783 * 13 10 8 39 39 H 1.09004 * 117.50046 * 214.97844 * 14 10 8 40 40 H 1.09001 * 117.50363 * 0.02562 * 14 10 8 41 41 H 1.08993 * 111.00767 * 277.42894 * 15 5 3 42 42 H 1.09001 * 111.03441 * 153.58856 * 15 5 3 43 43 H 1.08994 * 110.37111 * 81.82185 * 16 15 5 44 44 H 1.09000 * 110.36956 * 204.04280 * 16 15 5 45 45 H 0.97006 * 120.00751 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5999 1.9911 0.8328 5 6 1.6735 2.1286 -1.3328 6 1 1.5186 1.3907 -2.1199 7 7 0.4850 2.9702 -1.1729 8 6 -0.2357 3.3307 -2.2531 9 8 0.1498 3.0372 -3.3649 10 6 -1.5209 4.0985 -2.0796 11 6 -2.7453 3.2600 -1.7072 12 6 -2.9871 2.2030 -2.7867 13 6 -1.7444 5.3147 -2.9805 14 6 -1.4273 5.5099 -1.4966 15 6 2.9243 2.9965 -1.6323 16 6 4.0641 2.0946 -1.0967 17 7 3.5086 1.4576 0.1112 18 6 4.2375 0.9635 1.1600 19 1 3.7446 0.7035 2.0852 20 6 5.6097 0.7966 1.0338 21 7 6.2104 1.1137 -0.0935 22 14 6.6041 0.1232 2.4647 23 1 5.6996 -0.1529 3.6096 24 1 7.2768 -1.1346 2.0514 25 1 7.6263 1.1210 2.8702 26 1 -0.3633 0.6012 0.8335 27 1 -0.3633 0.4211 -0.9374 28 1 -0.3634 -1.0224 0.1039 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.2168 3.2679 -0.2895 32 1 -2.5716 2.7686 -0.7499 33 1 -3.6191 3.9072 -1.6301 34 1 -3.2277 2.6948 -3.7292 35 1 -2.0887 1.5986 -2.9111 36 1 -3.8174 1.5627 -2.4886 37 1 -0.9621 5.5592 -3.6991 38 1 -2.7639 5.5177 -3.3083 39 1 -2.2383 5.8414 -0.8480 40 1 -0.4362 5.8834 -1.2389 41 1 2.8844 3.9402 -1.0884 42 1 3.0333 3.1694 -2.7030 43 1 4.3293 1.3389 -1.8361 44 1 4.9361 2.6966 -0.8411 45 1 7.1694 0.9974 -0.1816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691499375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:39 Heat of formation + Delta-G solvation = -22.237612 kcal Electronic energy + Delta-G solvation = -23266.616069 eV Core-core repulsion = 20091.129137 eV Total energy + Delta-G solvation = -3175.486932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.37252 -39.64036 -37.73529 -35.60611 -34.25505 -33.46507 -32.80783 -30.85440 -28.26310 -26.62948 -25.33773 -24.06462 -23.37628 -22.97035 -22.04945 -21.46971 -20.11169 -18.75225 -17.67811 -17.44361 -16.72055 -16.44808 -15.94245 -15.75375 -15.45860 -15.09410 -14.74423 -14.57876 -14.39633 -14.02434 -13.74362 -13.57312 -13.30992 -13.24898 -12.90462 -12.73084 -12.59396 -12.58892 -12.36933 -12.21526 -12.12549 -12.03485 -11.96179 -11.88107 -11.57707 -11.39777 -11.30018 -10.90086 -10.71967 -10.61730 -9.98476 -8.85640 -7.84875 -5.23271 1.47112 1.48038 1.58173 1.63874 2.10764 2.51193 2.75928 3.34471 3.52361 3.66267 3.81613 3.83228 3.88364 3.95867 4.07576 4.16830 4.35392 4.39696 4.45700 4.58633 4.60636 4.63236 4.67991 4.74442 4.78490 4.86461 4.99299 5.01110 5.08239 5.11223 5.15756 5.19281 5.22273 5.25599 5.30861 5.40788 5.47033 5.50470 5.55338 5.66503 5.70656 6.22192 6.61813 7.08158 7.30031 7.75759 8.43107 9.26032 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028330 B = 0.004388 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.107033 B = 6379.456992 C = 6800.847262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.160 3.840 4 H 0.054 0.946 5 C 0.158 3.842 6 H 0.071 0.929 7 N -0.698 5.698 8 C 0.549 3.451 9 O -0.583 6.583 10 C -0.166 4.166 11 C -0.071 4.071 12 C -0.151 4.151 13 C -0.151 4.151 14 C -0.145 4.145 15 C -0.141 4.141 16 C 0.181 3.819 17 N -0.613 5.613 18 C -0.230 4.230 19 H 0.085 0.915 20 C -0.064 4.064 21 N -0.951 5.951 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.296 1.296 25 H -0.293 1.293 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.412 0.588 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.061 0.939 43 H -0.010 1.010 44 H 0.045 0.955 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.717 7.031 -0.127 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.071 0.929 5 C 0.052 3.948 6 H 0.089 0.911 7 N -0.348 5.348 8 C 0.337 3.663 9 O -0.463 6.463 10 C -0.169 4.169 11 C -0.109 4.109 12 C -0.208 4.208 13 C -0.188 4.188 14 C -0.182 4.182 15 C -0.181 4.181 16 C 0.055 3.945 17 N -0.338 5.338 18 C -0.359 4.359 19 H 0.102 0.898 20 C -0.257 4.257 21 N -0.600 5.600 22 Si 0.804 3.196 23 H -0.186 1.186 24 H -0.223 1.223 25 H -0.220 1.220 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.249 0.751 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.008 0.992 44 H 0.063 0.937 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.245 6.753 -0.837 21.358 hybrid contribution 1.483 -0.588 0.501 1.672 sum -18.762 6.165 -0.335 19.752 Atomic orbital electron populations 1.21645 0.93612 1.02025 1.01780 1.21901 0.96696 0.97492 1.00536 1.21290 0.84498 0.94649 0.94247 0.92855 1.21609 0.84192 0.91847 0.97108 0.91111 1.45853 1.26901 1.51642 1.10446 1.20142 0.84344 0.78294 0.83566 1.90675 1.72027 1.56919 1.26630 1.21508 0.94102 0.91036 1.10227 1.21035 0.94053 0.96822 0.98943 1.21729 1.00929 0.98879 0.99305 1.23051 1.03967 0.97881 0.93930 1.23238 1.04489 0.93960 0.96507 1.23211 0.95988 0.98739 1.00123 1.21152 0.93828 0.92454 0.87060 1.44755 1.00676 1.69015 1.19332 1.19373 0.89865 1.34752 0.91909 0.89751 1.25691 0.98202 1.02183 0.99618 1.70153 1.08817 1.54638 1.26407 0.85051 0.78547 0.77075 0.78915 1.18619 1.22331 1.22041 0.91304 0.93322 0.92166 0.94761 0.93088 0.75073 0.90268 0.88198 0.92808 0.95476 0.90875 0.90351 0.85725 0.84862 0.88961 0.91033 0.92045 0.99150 0.93698 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.62 71.98 0.69 -2.84 16 2 C -0.13 -4.60 5.44 30.59 0.17 -4.43 16 3 C 0.16 6.22 2.92 45.29 0.13 6.35 16 4 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 5 C 0.16 5.73 1.95 46.18 0.09 5.82 16 6 H 0.07 2.87 7.42 -2.39 -0.02 2.85 16 7 N -0.70 -19.32 4.96 -436.91 -2.17 -21.49 16 8 C 0.55 15.75 6.01 87.66 0.53 16.28 16 9 O -0.58 -22.26 16.76 -3.02 -0.05 -22.31 16 10 C -0.17 -3.20 1.95 -52.93 -0.10 -3.31 16 11 C -0.07 -1.05 5.84 30.60 0.18 -0.87 16 12 C -0.15 -2.77 9.78 71.98 0.70 -2.07 16 13 C -0.15 -2.63 9.86 30.59 0.30 -2.33 16 14 C -0.15 -2.08 9.95 30.59 0.30 -1.77 16 15 C -0.14 -5.74 6.77 31.99 0.22 -5.53 16 16 C 0.18 9.24 5.44 86.86 0.47 9.71 16 17 N -0.61 -30.82 3.14 -667.63 -2.10 -32.91 16 18 C -0.23 -12.53 9.76 84.03 0.82 -11.71 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 20 C -0.06 -3.60 5.47 84.86 0.46 -3.14 16 21 N -0.95 -57.56 10.50 21.65 0.23 -57.33 16 22 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.30 7.47 -2.39 -0.02 1.28 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 1.38 8.04 -2.39 -0.02 1.36 16 30 H 0.05 1.98 7.88 -2.39 -0.02 1.96 16 31 H 0.41 9.12 8.32 -92.71 -0.77 8.35 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 0.96 8.11 -2.39 -0.02 0.94 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.03 0.66 7.37 -2.39 -0.02 0.64 16 36 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 43 H -0.01 -0.54 8.10 -2.39 -0.02 -0.56 16 44 H 0.04 2.56 6.78 -2.39 -0.02 2.54 16 45 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 Total: -1.00 -69.93 359.87 3.08 -66.84 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.18 Total: 19.61 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.97 Total: 0.17 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -4.04 Total: -111.73 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.93 3.08 -66.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691499375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.604 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds