Wall clock time and date at job start Tue Mar 31 2020 02:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00135 * 2 1 4 4 C 1.52996 * 109.47235 * 119.99929 * 3 2 1 5 5 C 1.52997 * 109.47265 * 239.99905 * 3 2 1 6 6 C 1.52997 * 109.47232 * 300.00101 * 5 3 2 7 7 C 1.50703 * 109.47227 * 0.02562 * 3 2 1 8 8 O 1.21278 * 119.99985 * 240.00331 * 7 3 2 9 9 N 1.34779 * 119.99944 * 60.00043 * 7 3 2 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 3 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08996 * 112.85005 * 316.18669 * 11 10 9 13 13 C 1.53775 * 113.61825 * 87.50296 * 11 10 9 14 14 C 1.53776 * 87.08393 * 139.97637 * 13 11 10 15 15 H 1.09001 * 113.61681 * 220.01520 * 14 13 11 16 16 N 1.46505 * 113.68717 * 89.12583 * 14 13 11 17 17 C 1.36939 * 119.99600 * 107.46936 * 16 14 13 18 18 H 1.07997 * 120.00167 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99827 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00073 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47581 * 59.99458 * 21 19 17 23 23 H 1.48497 * 109.47323 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47020 * 299.99327 * 21 19 17 25 25 C 1.53774 * 87.08069 * 334.56900 * 14 13 11 26 26 H 1.08001 * 119.99975 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00438 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99975 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47108 * 300.00038 * 4 3 2 30 30 H 1.09004 * 109.47368 * 59.99937 * 4 3 2 31 31 H 1.09001 * 109.47372 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47045 * 60.00159 * 5 3 2 33 33 H 1.09001 * 109.47375 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.47289 * 60.00075 * 6 5 3 35 35 H 1.09000 * 109.47611 * 179.97438 * 6 5 3 36 36 H 1.09002 * 109.47153 * 299.99992 * 6 5 3 37 37 H 0.97000 * 119.99708 * 359.97438 * 9 7 3 38 38 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 39 39 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 40 40 H 1.09005 * 113.61502 * 254.53312 * 13 11 10 41 41 H 1.08999 * 113.61676 * 25.42734 * 13 11 10 42 42 H 0.97000 * 120.00254 * 287.46324 * 16 14 13 43 43 H 0.97000 * 120.00227 * 179.97438 * 20 19 17 44 44 H 1.09006 * 113.61277 * 270.88016 * 25 14 13 45 45 H 1.09001 * 113.69334 * 139.99428 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 6 2.9431 1.3861 -1.2492 6 6 3.9373 0.2232 -1.2492 7 6 1.0842 2.4506 0.0006 8 8 1.0890 3.2529 -0.9088 9 7 0.2031 2.5833 1.0119 10 6 -0.7492 3.6966 1.0122 11 6 -1.6278 3.6157 2.2621 12 1 -1.9761 2.6040 2.4699 13 6 -1.0248 4.3252 3.4860 14 6 -2.4459 4.8219 3.7998 15 1 -2.4804 5.8533 4.1509 16 7 -3.2157 3.9068 4.6463 17 6 -3.4646 4.2294 5.9536 18 1 -3.0931 5.1582 6.3608 19 6 -4.1936 3.3622 6.7558 20 7 -4.6459 2.2301 6.2597 21 14 -4.5325 3.8019 8.5394 22 1 -5.2967 5.0737 8.5992 23 1 -5.3251 2.7184 9.1743 24 1 -3.2456 3.9632 9.2626 25 6 -2.7452 4.6715 2.2990 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 2.3164 1.3284 2.1392 30 1 3.6514 0.5576 1.2493 31 1 3.4885 2.3299 1.2490 32 1 2.3165 1.3284 -2.1392 33 1 3.4885 2.3299 -1.2490 34 1 3.3924 -0.7208 -1.2493 35 1 4.5638 0.2806 -2.1394 36 1 4.5640 0.2809 -0.3592 37 1 0.1991 1.9414 1.7390 38 1 -1.3762 3.6387 0.1224 39 1 -0.2044 4.6407 1.0119 40 1 -0.6260 3.6409 4.2349 41 1 -0.3298 5.1245 3.2289 42 1 -3.5491 3.0725 4.2806 43 1 -5.1549 1.6239 6.8203 44 1 -2.5205 5.5656 1.7173 45 1 -3.7352 4.2672 2.0882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691520660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:48 Heat of formation + Delta-G solvation = 3.880230 kcal Electronic energy + Delta-G solvation = -22217.307805 eV Core-core repulsion = 19042.953428 eV Total energy + Delta-G solvation = -3174.354377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.60593 -38.67647 -36.61583 -34.80715 -33.27855 -32.14605 -30.26591 -29.62645 -27.29871 -25.43190 -25.06485 -23.74428 -22.13180 -21.91300 -21.16698 -19.14868 -18.18640 -17.30550 -16.67549 -16.32475 -15.96952 -15.04046 -14.72089 -14.59957 -14.36809 -14.08452 -13.73361 -13.66462 -13.17387 -12.89880 -12.81498 -12.38450 -12.28155 -12.19085 -11.95228 -11.90769 -11.77767 -11.38022 -11.08308 -11.04428 -10.84364 -10.66501 -10.49892 -10.22188 -10.07140 -9.70732 -9.68399 -9.59542 -9.43376 -8.94037 -8.87337 -7.02131 -5.82510 -3.11597 2.04985 2.61643 3.18026 3.41073 3.45673 3.46488 4.42803 4.46204 4.54121 4.72025 4.84198 5.02035 5.06516 5.09058 5.13844 5.22825 5.29601 5.35561 5.43682 5.50175 5.61531 5.64441 5.70158 5.73788 5.75390 5.84398 5.88017 5.95409 5.99075 6.10125 6.15156 6.20179 6.35973 6.37977 6.43369 6.48665 6.58417 6.73012 6.89017 7.02839 7.51538 7.66763 8.20977 8.36713 9.47296 10.04823 10.39109 11.39860 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026842 B = 0.003234 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.874074 B = 8655.892484 C = 9053.365123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.051 4.051 4 C -0.141 4.141 5 C -0.095 4.095 6 C -0.155 4.155 7 C 0.522 3.478 8 O -0.543 6.543 9 N -0.722 5.722 10 C 0.129 3.871 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.168 4.168 14 C 0.168 3.832 15 H 0.062 0.938 16 N -0.706 5.706 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.148 4.148 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.404 0.596 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.076 0.924 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.557 -3.922 -13.350 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.167 4.167 3 C -0.055 4.055 4 C -0.198 4.198 5 C -0.133 4.133 6 C -0.212 4.212 7 C 0.308 3.692 8 O -0.420 6.420 9 N -0.374 5.374 10 C 0.005 3.995 11 C -0.138 4.138 12 H 0.111 0.889 13 C -0.209 4.209 14 C 0.055 3.945 15 H 0.080 0.920 16 N -0.344 5.344 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.188 4.188 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.239 0.761 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.490 -3.259 -13.794 20.270 hybrid contribution -0.353 -0.527 1.217 1.372 sum 14.137 -3.786 -12.577 19.297 Atomic orbital electron populations 1.24401 0.96231 1.03377 0.99242 1.22699 0.95676 0.96826 1.01530 1.20004 0.95107 0.91862 0.98491 1.21891 0.99517 1.02949 0.95431 1.21311 0.96857 0.99256 0.95883 1.21898 0.99037 0.98395 1.01859 1.20425 0.80971 0.86001 0.81755 1.90680 1.71090 1.44228 1.36014 1.46303 1.35650 1.30372 1.25104 1.21493 0.90327 0.89103 0.98533 1.22704 0.97092 1.00042 0.93949 0.88911 1.23884 1.00270 0.99876 0.96899 1.21048 0.90105 0.94289 0.89030 0.92001 1.42162 1.61911 1.21528 1.08808 1.19247 1.28135 1.03122 0.86914 0.91055 1.24761 1.00774 0.96827 0.98476 1.69648 1.41547 1.11021 1.35872 0.86244 0.77831 0.77211 0.84758 1.21192 1.21675 1.21213 1.23444 0.97867 0.97873 0.99585 0.87208 0.87858 0.86177 0.91816 0.90926 0.91827 0.91259 0.91136 0.92454 0.92580 0.92299 0.76084 0.91877 0.91627 0.91538 0.91429 0.78110 0.93379 0.90496 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.97 13.17 29.01 0.38 -1.59 16 2 C -0.15 -1.37 7.99 -36.03 -0.29 -1.66 16 3 C -0.05 -0.52 0.62 -156.81 -0.10 -0.62 16 4 C -0.14 -1.21 8.00 37.16 0.30 -0.91 16 5 C -0.10 -0.93 4.27 -26.73 -0.11 -1.04 16 6 C -0.15 -1.12 9.30 37.16 0.35 -0.77 16 7 C 0.52 6.87 5.34 -10.98 -0.06 6.81 16 8 O -0.54 -9.05 15.98 5.56 0.09 -8.96 16 9 N -0.72 -8.89 3.73 -60.29 -0.22 -9.11 16 10 C 0.13 1.72 5.51 -4.04 -0.02 1.70 16 11 C -0.12 -1.76 3.63 -89.81 -0.33 -2.09 16 12 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 13 C -0.17 -2.77 7.43 -25.92 -0.19 -2.96 16 14 C 0.17 3.24 4.56 -67.12 -0.31 2.93 16 15 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 16 N -0.71 -17.22 5.31 -52.64 -0.28 -17.50 16 17 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 20 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 21 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.15 -2.35 7.39 -25.92 -0.19 -2.55 16 26 H 0.11 1.28 5.18 -52.49 -0.27 1.00 16 27 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.12 0.90 7.00 -52.49 -0.37 0.53 16 29 H 0.06 0.55 7.56 -51.93 -0.39 0.15 16 30 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.06 0.38 6.62 -51.93 -0.34 0.04 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 37 H 0.40 4.54 7.23 -40.82 -0.30 4.24 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 42 H 0.38 9.92 7.90 -40.82 -0.32 9.60 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -30.68 357.18 -7.82 -38.50 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -7.67 Total: 11.54 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -0.82 Total: -9.97 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.22 Total: -53.52 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.68 -7.82 -38.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691520660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.376 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds