Wall clock time and date at job start Tue Mar 31 2020 02:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00135 * 2 1 4 4 C 1.52996 * 109.47235 * 119.99929 * 3 2 1 5 5 C 1.52997 * 109.47265 * 239.99905 * 3 2 1 6 6 C 1.52997 * 109.47232 * 300.00101 * 5 3 2 7 7 C 1.50703 * 109.47227 * 0.02562 * 3 2 1 8 8 O 1.21278 * 119.99985 * 240.00331 * 7 3 2 9 9 N 1.34779 * 119.99944 * 60.00043 * 7 3 2 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 3 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08996 * 112.85005 * 316.18669 * 11 10 9 13 13 C 1.53775 * 113.61825 * 87.50296 * 11 10 9 14 14 C 1.53776 * 87.08393 * 139.97637 * 13 11 10 15 15 H 1.09001 * 113.61681 * 220.01520 * 14 13 11 16 16 N 1.46505 * 113.68717 * 89.12583 * 14 13 11 17 17 C 1.36939 * 119.99600 * 107.46936 * 16 14 13 18 18 H 1.07997 * 120.00167 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99827 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00073 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47581 * 59.99458 * 21 19 17 23 23 H 1.48497 * 109.47323 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47020 * 299.99327 * 21 19 17 25 25 C 1.53774 * 87.08069 * 334.56900 * 14 13 11 26 26 H 1.08001 * 119.99975 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.00438 * 180.02562 * 1 2 3 28 28 H 1.08001 * 119.99975 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47108 * 300.00038 * 4 3 2 30 30 H 1.09004 * 109.47368 * 59.99937 * 4 3 2 31 31 H 1.09001 * 109.47372 * 179.97438 * 4 3 2 32 32 H 1.09002 * 109.47045 * 60.00159 * 5 3 2 33 33 H 1.09001 * 109.47375 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.47289 * 60.00075 * 6 5 3 35 35 H 1.09000 * 109.47611 * 179.97438 * 6 5 3 36 36 H 1.09002 * 109.47153 * 299.99992 * 6 5 3 37 37 H 0.97000 * 119.99708 * 359.97438 * 9 7 3 38 38 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 39 39 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 40 40 H 1.09005 * 113.61502 * 254.53312 * 13 11 10 41 41 H 1.08999 * 113.61676 * 25.42734 * 13 11 10 42 42 H 0.97000 * 120.00254 * 287.46324 * 16 14 13 43 43 H 0.97000 * 120.00227 * 179.97438 * 20 19 17 44 44 H 1.09006 * 113.61277 * 270.88016 * 25 14 13 45 45 H 1.09001 * 113.69334 * 139.99428 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 1.2492 5 6 2.9431 1.3861 -1.2492 6 6 3.9373 0.2232 -1.2492 7 6 1.0842 2.4506 0.0006 8 8 1.0890 3.2529 -0.9088 9 7 0.2031 2.5833 1.0119 10 6 -0.7492 3.6966 1.0122 11 6 -1.6278 3.6157 2.2621 12 1 -1.9761 2.6040 2.4699 13 6 -1.0248 4.3252 3.4860 14 6 -2.4459 4.8219 3.7998 15 1 -2.4804 5.8533 4.1509 16 7 -3.2157 3.9068 4.6463 17 6 -3.4646 4.2294 5.9536 18 1 -3.0931 5.1582 6.3608 19 6 -4.1936 3.3622 6.7558 20 7 -4.6459 2.2301 6.2597 21 14 -4.5325 3.8019 8.5394 22 1 -5.2967 5.0737 8.5992 23 1 -5.3251 2.7184 9.1743 24 1 -3.2456 3.9632 9.2626 25 6 -2.7452 4.6715 2.2990 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 2.3164 1.3284 2.1392 30 1 3.6514 0.5576 1.2493 31 1 3.4885 2.3299 1.2490 32 1 2.3165 1.3284 -2.1392 33 1 3.4885 2.3299 -1.2490 34 1 3.3924 -0.7208 -1.2493 35 1 4.5638 0.2806 -2.1394 36 1 4.5640 0.2809 -0.3592 37 1 0.1991 1.9414 1.7390 38 1 -1.3762 3.6387 0.1224 39 1 -0.2044 4.6407 1.0119 40 1 -0.6260 3.6409 4.2349 41 1 -0.3298 5.1245 3.2289 42 1 -3.5491 3.0725 4.2806 43 1 -5.1549 1.6239 6.8203 44 1 -2.5205 5.5656 1.7173 45 1 -3.7352 4.2672 2.0882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691520660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:48 Heat of formation + Delta-G solvation = -14.401088 kcal Electronic energy + Delta-G solvation = -22218.100543 eV Core-core repulsion = 19042.953428 eV Total energy + Delta-G solvation = -3175.147115 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61167 -40.06126 -37.53706 -36.11348 -35.02909 -32.96526 -32.02791 -30.46626 -28.57688 -26.45009 -26.25152 -25.61213 -23.36096 -22.78006 -22.18177 -20.29651 -19.51179 -19.21243 -17.65374 -17.30183 -16.98157 -16.68433 -15.95602 -15.86639 -15.37587 -15.32319 -15.04094 -14.75172 -14.53355 -14.27117 -13.82985 -13.54228 -13.29894 -13.10501 -12.96928 -12.92555 -12.86722 -12.65524 -12.55974 -12.51479 -12.20212 -12.07924 -11.78023 -11.53995 -11.48280 -11.39025 -10.98863 -10.86601 -10.62725 -10.36695 -9.99493 -9.00241 -7.95187 -5.23586 1.29586 1.48198 1.50584 1.56685 1.58505 2.17941 2.55960 3.37100 3.54494 3.68865 3.71535 3.77718 3.85410 3.98211 4.09047 4.15233 4.31414 4.36642 4.39721 4.47325 4.61630 4.69725 4.70874 4.74485 4.83355 4.91502 4.97711 4.99333 5.03867 5.09732 5.10878 5.18717 5.27376 5.31673 5.34214 5.47262 5.51150 5.54688 5.62566 5.65234 5.73692 6.28279 6.49715 7.18071 7.33379 8.10295 8.32890 9.27859 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026842 B = 0.003234 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.874074 B = 8655.892484 C = 9053.365123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.139 4.139 3 C -0.049 4.049 4 C -0.139 4.139 5 C -0.094 4.094 6 C -0.150 4.150 7 C 0.519 3.481 8 O -0.582 6.582 9 N -0.716 5.716 10 C 0.138 3.862 11 C -0.101 4.101 12 H 0.081 0.919 13 C -0.153 4.153 14 C 0.145 3.855 15 H 0.059 0.941 16 N -0.719 5.719 17 C -0.244 4.244 18 H 0.076 0.924 19 C -0.074 4.074 20 N -0.969 5.969 21 Si 0.972 3.028 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.278 1.278 25 C -0.135 4.135 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.146 0.854 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.410 0.590 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.090 0.910 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.104 0.896 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.156 -4.121 -13.397 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.157 4.157 3 C -0.052 4.052 4 C -0.196 4.196 5 C -0.132 4.132 6 C -0.207 4.207 7 C 0.307 3.693 8 O -0.462 6.462 9 N -0.367 5.367 10 C 0.014 3.986 11 C -0.120 4.120 12 H 0.099 0.901 13 C -0.193 4.193 14 C 0.035 3.965 15 H 0.078 0.922 16 N -0.358 5.358 17 C -0.376 4.376 18 H 0.094 0.906 19 C -0.266 4.266 20 N -0.619 5.619 21 Si 0.801 3.199 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.204 1.204 25 C -0.174 4.174 26 H 0.109 0.891 27 H 0.133 0.867 28 H 0.164 0.836 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.247 0.753 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.123 0.877 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.121 -3.428 -13.847 21.526 hybrid contribution -0.819 -0.386 1.163 1.474 sum 15.302 -3.814 -12.684 20.238 Atomic orbital electron populations 1.24403 0.96715 1.03109 1.00579 1.22862 0.95400 0.97183 1.00247 1.20055 0.94682 0.90959 0.99548 1.21915 0.99584 1.03764 0.94342 1.21291 0.96995 0.99997 0.94908 1.21877 0.98573 0.97412 1.02804 1.21026 0.81046 0.86294 0.80956 1.90659 1.72271 1.45896 1.37409 1.46246 1.35190 1.30078 1.25218 1.21306 0.90249 0.89562 0.97448 1.22476 0.96552 0.99066 0.93895 0.90083 1.23706 0.98634 1.00101 0.96887 1.21367 0.91514 0.93278 0.90373 0.92246 1.42291 1.62880 1.21971 1.08627 1.19632 1.26900 1.02871 0.88194 0.90616 1.25544 1.01558 0.97082 1.02455 1.69800 1.42922 1.12129 1.37047 0.85228 0.77723 0.76773 0.80144 1.20490 1.22232 1.20378 1.23351 0.97769 0.99255 0.97061 0.89134 0.86653 0.83616 0.91817 0.88635 0.92216 0.93043 0.92308 0.91533 0.91984 0.91080 0.75341 0.92073 0.91539 0.93298 0.89113 0.79342 0.93991 0.87749 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.02 13.17 67.78 0.89 -3.12 16 2 C -0.14 -2.28 7.99 25.65 0.21 -2.08 16 3 C -0.05 -0.93 0.62 -53.68 -0.03 -0.96 16 4 C -0.14 -2.07 8.00 71.98 0.58 -1.50 16 5 C -0.09 -1.73 4.27 30.59 0.13 -1.60 16 6 C -0.15 -1.78 9.30 71.98 0.67 -1.11 16 7 C 0.52 13.36 5.34 87.66 0.47 13.82 16 8 O -0.58 -19.43 15.98 -3.02 -0.05 -19.48 16 9 N -0.72 -17.05 3.73 -463.05 -1.73 -18.78 16 10 C 0.14 3.54 5.51 86.38 0.48 4.02 16 11 C -0.10 -2.89 3.63 -10.27 -0.04 -2.93 16 12 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 13 C -0.15 -4.84 7.43 31.12 0.23 -4.61 16 14 C 0.14 5.50 4.56 45.51 0.21 5.71 16 15 H 0.06 2.27 8.10 -2.39 -0.02 2.25 16 16 N -0.72 -35.44 5.31 -320.45 -1.70 -37.14 16 17 C -0.24 -13.36 9.97 84.03 0.84 -12.52 16 18 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 20 N -0.97 -58.34 13.06 21.65 0.28 -58.06 16 21 Si 0.97 45.50 29.55 68.60 2.03 47.52 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 C -0.14 -4.14 7.39 31.12 0.23 -3.91 16 26 H 0.09 2.08 5.18 -2.91 -0.02 2.07 16 27 H 0.12 1.88 8.06 -2.91 -0.02 1.86 16 28 H 0.15 1.68 7.00 -2.91 -0.02 1.66 16 29 H 0.06 0.96 7.56 -2.38 -0.02 0.94 16 30 H 0.09 1.00 6.43 -2.39 -0.02 0.99 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 1.11 8.10 -2.39 -0.02 1.10 16 33 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 34 H 0.07 0.68 6.62 -2.39 -0.02 0.67 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.69 6.43 -2.39 -0.02 0.67 16 37 H 0.41 8.84 7.23 -92.71 -0.67 8.17 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.74 7.84 -2.39 -0.02 1.72 16 40 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.09 2.48 7.89 -2.39 -0.02 2.46 16 42 H 0.37 19.73 7.90 -92.71 -0.73 19.00 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 44 H 0.10 2.65 8.10 -2.38 -0.02 2.63 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -66.49 357.18 3.72 -62.76 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -0.43 Total: 37.68 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 5.32 Total: -14.51 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -3.14 Total: -113.98 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.05 Total: -19.48 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -66.49 3.72 -62.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691520660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.361 kcal (2) G-P(sol) polarization free energy of solvation -66.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds