Wall clock time and date at job start Tue Mar 31 2020 02:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47099 * 2 1 4 4 H 1.09002 * 115.54659 * 29.32518 * 3 2 1 5 5 C 1.53004 * 117.49894 * 243.62184 * 3 2 1 6 6 C 1.52997 * 117.50258 * 174.99883 * 3 2 1 7 7 H 1.09004 * 117.49788 * 359.97438 * 6 3 2 8 8 C 1.50694 * 117.50190 * 214.98098 * 6 3 2 9 9 O 1.21278 * 120.00107 * 359.97438 * 8 6 3 10 10 N 1.34777 * 120.00116 * 180.02562 * 8 6 3 11 11 C 1.46501 * 120.00206 * 185.06752 * 10 8 6 12 12 C 1.53001 * 110.01412 * 294.85659 * 11 10 8 13 13 N 1.46494 * 109.46952 * 306.54087 * 12 11 10 14 14 C 1.36943 * 119.99518 * 174.94321 * 13 12 11 15 15 H 1.07996 * 120.00325 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99691 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00118 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47032 * 60.00387 * 18 16 14 20 20 H 1.48504 * 109.47069 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47361 * 300.00005 * 18 16 14 22 22 C 1.53874 * 110.03226 * 56.24644 * 11 10 8 23 23 C 1.54268 * 106.60013 * 119.28798 * 22 11 10 24 24 C 1.54893 * 104.30873 * 336.32376 * 23 22 11 25 25 C 1.54260 * 110.03574 * 173.41459 * 11 10 8 26 26 H 1.09004 * 109.46609 * 59.99999 * 1 2 3 27 27 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47014 * 300.00125 * 1 2 3 29 29 H 1.09006 * 109.47467 * 240.00169 * 2 1 3 30 30 H 1.09000 * 109.47421 * 119.99620 * 2 1 3 31 31 H 1.08998 * 117.49620 * 145.01501 * 5 3 2 32 32 H 1.08994 * 117.49601 * 0.02562 * 5 3 2 33 33 H 0.97001 * 120.00152 * 5.06001 * 10 8 6 34 34 H 1.09003 * 109.47076 * 66.54028 * 12 11 10 35 35 H 1.09006 * 109.46859 * 186.53854 * 12 11 10 36 36 H 0.97000 * 120.00614 * 354.94119 * 13 12 11 37 37 H 0.97002 * 120.00185 * 179.97438 * 17 16 14 38 38 H 1.09003 * 110.03130 * 0.02562 * 22 11 10 39 39 H 1.09005 * 110.03184 * 238.57488 * 22 11 10 40 40 H 1.08999 * 110.48813 * 95.06503 * 23 22 11 41 41 H 1.09000 * 110.48786 * 217.57946 * 23 22 11 42 42 H 1.09003 * 110.75549 * 156.32556 * 24 23 22 43 43 H 1.09003 * 110.75317 * 279.69349 * 24 23 22 44 44 H 1.09002 * 110.48506 * 23.00212 * 25 11 10 45 45 H 1.08994 * 110.48983 * 145.64619 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8440 1.9076 -1.2159 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7721 0.1966 8 6 4.0228 2.8621 0.8914 9 8 3.2157 3.6170 1.3911 10 7 5.3423 3.1007 1.0267 11 6 5.8042 4.2062 1.8697 12 6 5.3568 5.5421 1.2729 13 7 5.7915 5.6230 -0.1237 14 6 5.4144 6.6880 -0.8975 15 1 4.7963 7.4681 -0.4784 16 6 5.8268 6.7649 -2.2208 17 7 6.5797 5.8140 -2.7319 18 14 5.3118 8.2174 -3.2766 19 1 5.8178 9.4746 -2.6696 20 1 5.8779 8.0631 -4.6408 21 1 3.8300 8.2688 -3.3590 22 6 5.2447 4.0518 3.2948 23 6 6.4615 3.9271 4.2349 24 6 7.5996 3.4082 3.3212 25 6 7.3414 4.1700 1.9935 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.7212 2.9428 -1.5344 32 1 3.0092 1.1860 -2.0159 33 1 5.9863 2.5403 0.5660 34 1 4.2703 5.6154 1.3201 35 1 5.8012 6.3603 1.8398 36 1 6.3465 4.9222 -0.5004 37 1 6.8675 5.8676 -3.6567 38 1 4.6299 3.1540 3.3593 39 1 4.6552 4.9290 3.5615 40 1 6.7216 4.8994 4.6533 41 1 6.2562 3.2124 5.0318 42 1 8.5747 3.6663 3.7343 43 1 7.5147 2.3317 3.1720 44 1 7.7792 3.6307 1.1534 45 1 7.7436 5.1814 2.0500 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698633943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:48 Heat of formation + Delta-G solvation = -20.990700 kcal Electronic energy + Delta-G solvation = -23019.568058 eV Core-core repulsion = 19844.135196 eV Total energy + Delta-G solvation = -3175.432862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.10473 -38.25335 -36.34566 -34.24032 -33.00636 -32.00469 -30.90288 -28.58150 -28.05606 -24.68512 -24.13306 -23.48093 -22.13817 -20.70863 -20.49766 -19.70634 -18.79727 -17.02346 -16.90191 -15.91345 -15.15539 -14.75002 -14.56984 -14.40708 -14.23879 -14.02413 -13.71999 -13.14718 -12.94241 -12.54574 -12.45198 -12.34411 -12.04358 -11.91308 -11.55167 -11.31754 -11.12193 -10.97687 -10.91632 -10.85052 -10.77259 -10.65259 -10.38984 -10.36382 -10.07052 -10.00836 -9.88873 -9.62411 -9.21846 -8.73599 -8.42350 -6.79870 -5.69415 -2.95214 3.00580 3.48489 3.52294 3.53222 3.55033 4.09627 4.63804 4.70133 4.79537 4.87478 4.93782 5.00854 5.09073 5.21653 5.31408 5.38618 5.45940 5.58001 5.64978 5.68937 5.72142 5.75066 5.82007 5.88385 5.93499 5.95612 6.00897 6.03434 6.07764 6.11195 6.23380 6.27567 6.34840 6.45892 6.48063 6.52359 6.58596 6.68721 6.99767 7.23265 7.77848 8.05644 8.50393 8.79965 9.61652 10.20732 10.56986 11.53769 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.006511 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.302935 B = 4299.199707 C = 6321.969096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.123 4.123 4 H 0.116 0.884 5 C -0.143 4.143 6 C -0.188 4.188 7 H 0.116 0.884 8 C 0.550 3.450 9 O -0.537 6.537 10 N -0.706 5.706 11 C 0.170 3.830 12 C 0.145 3.855 13 N -0.724 5.724 14 C -0.229 4.229 15 H 0.067 0.933 16 C -0.016 4.016 17 N -0.937 5.937 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.288 1.288 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.119 4.119 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.396 0.604 34 H 0.042 0.958 35 H 0.018 0.982 36 H 0.382 0.618 37 H 0.253 0.747 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 -12.957 9.735 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.142 4.142 4 H 0.134 0.866 5 C -0.181 4.181 6 C -0.209 4.209 7 H 0.134 0.866 8 C 0.337 3.663 9 O -0.414 6.414 10 N -0.356 5.356 11 C 0.084 3.916 12 C 0.017 3.983 13 N -0.368 5.368 14 C -0.361 4.361 15 H 0.085 0.915 16 C -0.211 4.211 17 N -0.586 5.586 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.155 4.155 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.157 4.157 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.230 0.770 34 H 0.060 0.940 35 H 0.036 0.964 36 H 0.215 0.785 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.820 -12.249 10.062 16.305 hybrid contribution 0.378 0.356 -1.135 1.249 sum -3.442 -11.892 8.926 15.263 Atomic orbital electron populations 1.21736 0.95406 1.01285 1.02196 1.21133 0.96066 0.94027 1.01792 1.22433 0.91637 0.98156 1.01972 0.86622 1.23080 1.01331 1.03621 0.90029 1.22284 0.97036 0.98989 1.02635 0.86611 1.19395 0.82393 0.85072 0.79487 1.90644 1.54015 1.47862 1.48894 1.45916 1.06765 1.33049 1.49901 1.21203 0.93368 0.87575 0.89484 1.21154 0.98437 0.91713 0.86990 1.42181 1.61732 1.26523 1.06389 1.19198 1.25090 0.99353 0.92441 0.91524 1.24658 1.00922 0.98453 0.97046 1.69638 1.40806 1.33921 1.14262 0.86302 0.78012 0.82382 0.79743 1.21391 1.21781 1.21441 1.22403 0.97220 1.02612 0.93247 1.22387 0.95413 1.00843 0.97588 1.22582 0.98223 0.99594 0.95793 1.22660 0.93905 1.01859 0.97270 0.92488 0.92894 0.92569 0.91832 0.91756 0.87766 0.88221 0.77011 0.93989 0.96418 0.78494 0.93717 0.91544 0.91036 0.91643 0.92142 0.91683 0.91837 0.91023 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.87 37.16 0.37 -1.02 16 2 C -0.09 -0.95 6.22 -26.73 -0.17 -1.11 16 3 C -0.12 -1.64 5.25 -90.62 -0.48 -2.12 16 4 H 0.12 1.76 7.60 -51.93 -0.39 1.37 16 5 C -0.14 -2.07 9.88 -26.73 -0.26 -2.34 16 6 C -0.19 -2.69 5.91 -91.78 -0.54 -3.24 16 7 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 8 C 0.55 9.77 6.66 -10.99 -0.07 9.70 16 9 O -0.54 -11.32 13.55 5.56 0.08 -11.25 16 10 N -0.71 -11.64 4.56 -46.58 -0.21 -11.86 16 11 C 0.17 2.89 0.57 -130.70 -0.07 2.82 16 12 C 0.15 3.19 4.63 -4.04 -0.02 3.17 16 13 N -0.72 -18.71 5.27 -59.91 -0.32 -19.03 16 14 C -0.23 -6.65 9.99 -15.05 -0.15 -6.80 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 17 N -0.94 -28.37 13.06 55.49 0.72 -27.64 16 18 Si 0.90 23.06 29.55 -169.99 -5.02 18.04 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 C -0.12 -1.77 5.22 -25.61 -0.13 -1.91 16 23 C -0.12 -1.53 6.82 -25.07 -0.17 -1.70 16 24 C -0.12 -1.48 6.93 -24.55 -0.17 -1.65 16 25 C -0.12 -1.78 5.70 -24.89 -0.14 -1.92 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.60 7.88 -51.93 -0.41 0.19 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 32 H 0.10 1.22 8.03 -51.93 -0.42 0.81 16 33 H 0.40 5.76 8.23 -40.82 -0.34 5.43 16 34 H 0.04 1.03 6.61 -51.93 -0.34 0.69 16 35 H 0.02 0.40 8.00 -51.93 -0.42 -0.02 16 36 H 0.38 10.07 7.20 -40.82 -0.29 9.78 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.05 6.99 -51.93 -0.36 0.69 16 39 H 0.07 1.16 7.67 -51.93 -0.40 0.77 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 1.07 7.70 -51.93 -0.40 0.67 16 45 H 0.08 1.37 7.76 -51.93 -0.40 0.96 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -32.49 357.69 -9.42 -41.91 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -7.95 Total: 13.10 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.11 Total: -8.66 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.20 Total: -58.53 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.49 -9.42 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698633943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.917 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds